Clone LP04135 Report

Search the DGRC for LP04135

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:41
Well:35
Vector:pOT2
Associated Gene/TranscriptCG2906-RE
Protein status:LP04135.pep: gold
Preliminary Size:1027
Sequenced Size:1503

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2906 2002-01-01 Sim4 clustering to Release 2
CG2906 2008-04-29 Release 5.5 accounting
CG2906 2008-04-29 Picked prior to 5.5
CG2906 2008-08-15 Release 5.9 accounting
CG2906 2008-12-18 5.12 accounting

Clone Sequence Records

LP04135.complete Sequence

1503 bp assembled on 2007-11-15

GenBank Submission: BT031275

> LP04135.complete
GACTTCTTCATAGACGATCATTGGAGTAAACTTCCAGGGAATTGGCAAAA
GCACTTAGAAAGCATTCCTCTGGAGAACCTTGGAGATTTGCTCAAAAATG
AGAATCATAATACCCAGCTGACATGGCCATTGGATCTGAAGAACCTGCAA
GAGGAGCTTAGGAAACTCTGCGTCAGCCGTGTACCAAAGCACCCGCCTGA
TGTTGAACTCCCTTCCTTGCTCACTTCTTGATCACCCCAAGCTAAAATAC
GTGTTCCTAAAGCGGGTTAAGCCAAAGAAGCACCATGAAATCATTCGAAT
GGCCGAAATCTGTGCCCTGAGTCAACAAAAAACTCCTGTGGACTTTATTG
TCGACTTTGGGGCTGGTGTCGGTCACCTAGCACGTGTTTTGGGCTACGGG
TATGGACTACGAGTGTGCTGCTATGAGATGCAACCCGATCTCAATCAGCA
AGCAAGGGAAATTGATTTAAAGCTGGAGTCCATGGCAGCAAAACACCTAT
CAGAGGATGAAACCACACACTTTCAGCGACCAGTACACCTTACACATCGC
TTGGAGAGCAGCACTAAGCCAGAGCAGTTCCTATCCAGCATTCGGCAGGC
CCTGCAGCTAACAGACGACAATTTCCGATTTGGTGTGATAGGCCTGCATC
CCTGTGGCAATCTGGGCCCGACACTGATGCGCATGTTTCTCGGCTGCCCG
CAGGCCAAGTTCCTCAATTTTGTGGGCTGTTGCTACCAGAAGATGACTAC
CCAGTCCACCCATCCCAGGGAGCATGTCCATGGGTACCCGTTGAGCAGTG
AACTCAAAGATAAAAACGAATGCCAACTCAGCTACGAGGCCCGTGAGATC
TCCTGTCACGCTATGGAGGTGTATCACGATCGTCTGAGGATGGGGGATTA
CCAACATCTCCGCATACACTCCCTAAGAGCCGCCGCCGAGCGAATAATAG
TGCATCAGTTTCCAGAGCTTCGCCACTGTGCCCTGCGAAATGTAAAGTAC
TCACCCGGCATGACGTTTCACCAATATTTCCAGAAAGCCGTACAGGGTAC
TCGCTTTGAAGCACTGGACAGCCGAACTCTAAGTAACCAGCAGACGGAAA
CAGATTTGGCCAACTGGCAACGGATAGTCTCATTCTACACACTTCGATTA
ATGATGGCTCCGCTGGTGGAGAGCATTATTCTTTACGATCGCTGCCTGTT
TCTAATGGAAAATGATTGTCAAGTACAGATAGAGGCCATATTCGATCCTC
GGCTCTCGCCTAGAAACCACATCACCAGGGCCGTTAAACCGTAATTTTAC
TGGGGTAGAATTACCCTAATCTGACCATATATCACGCACAAGCGACATAC
CCGCCTGATCCTTATCGTTTAATGCTATAAAGTGTAACCACAACATTGCC
TTTCGCGTTTACGTGTGTTTATTTTTAAAAAGATAAAGTAATATATCGTT
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

LP04135.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG2906.b 1608 CG2906.b 153..1605 1..1453 7265 100 Plus
CG2906-RD 1621 CG2906-RD 138..1586 1..1453 7180 99.7 Plus
CG2906.a 1621 CG2906.a 138..1586 1..1453 7180 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3844289..3845107 205..1023 4095 100 Plus
chr2R 21145070 chr2R 3845409..3845646 1214..1451 1190 100 Plus
chr2R 21145070 chr2R 3844028..3844232 1..205 1025 100 Plus
chr2R 21145070 chr2R 3845161..3845351 1024..1214 955 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:48:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7956897..7957715 205..1023 4095 100 Plus
2R 25286936 2R 7958017..7958256 1214..1453 1200 100 Plus
2R 25286936 2R 7956636..7956840 1..205 1025 100 Plus
2R 25286936 2R 7957769..7957959 1024..1214 955 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7958096..7958914 205..1023 4095 100 Plus
2R 25260384 2R 7959216..7959455 1214..1453 1200 100 Plus
2R 25260384 2R 7957835..7958039 1..205 1025 100 Plus
2R 25260384 2R 7958968..7959158 1024..1214 955 100 Plus
Blast to na_te.dros performed on 2019-03-16 09:46:16 has no hits.

LP04135.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:47:04 Download gff for LP04135.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3845410..3845646 1215..1451 100   Plus
chr2R 3844028..3844232 1..205 100 -> Plus
chr2R 3844290..3845107 206..1023 100 -> Plus
chr2R 3845161..3845351 1024..1214 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:35:28 Download gff for LP04135.complete
Subject Subject Range Query Range Percent Splice Strand
CG2906-RD 82..1371 1..1294 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:05:20 Download gff for LP04135.complete
Subject Subject Range Query Range Percent Splice Strand
CG2906-RD 82..1371 1..1294 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:37:15 Download gff for LP04135.complete
Subject Subject Range Query Range Percent Splice Strand
CG2906-RD 82..1371 1..1294 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:51:38 Download gff for LP04135.complete
Subject Subject Range Query Range Percent Splice Strand
CG2906-RD 82..1371 1..1294 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:52 Download gff for LP04135.complete
Subject Subject Range Query Range Percent Splice Strand
CG2906-RD 82..1371 1..1294 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:58:25 Download gff for LP04135.complete
Subject Subject Range Query Range Percent Splice Strand
CG2906-RD 82..1528 1..1451 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:05:19 Download gff for LP04135.complete
Subject Subject Range Query Range Percent Splice Strand
CG2906-RE 141..1591 1..1451 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:37:15 Download gff for LP04135.complete
Subject Subject Range Query Range Percent Splice Strand
CG2906-RE 141..1591 1..1451 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:51:38 Download gff for LP04135.complete
Subject Subject Range Query Range Percent Splice Strand
CG2906-RD 82..1528 1..1451 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:52 Download gff for LP04135.complete
Subject Subject Range Query Range Percent Splice Strand
CG2906-RE 141..1591 1..1451 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:47:04 Download gff for LP04135.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7956636..7956840 1..205 100 -> Plus
2R 7956898..7957715 206..1023 100 -> Plus
2R 7957769..7957959 1024..1214 100 -> Plus
2R 7958018..7958254 1215..1451 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:47:04 Download gff for LP04135.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7956636..7956840 1..205 100 -> Plus
2R 7956898..7957715 206..1023 100 -> Plus
2R 7957769..7957959 1024..1214 100 -> Plus
2R 7958018..7958254 1215..1451 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:47:04 Download gff for LP04135.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7956636..7956840 1..205 100 -> Plus
2R 7956898..7957715 206..1023 100 -> Plus
2R 7957769..7957959 1024..1214 100 -> Plus
2R 7958018..7958254 1215..1451 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:37:15 Download gff for LP04135.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3844141..3844345 1..205 100 -> Plus
arm_2R 3844403..3845220 206..1023 100 -> Plus
arm_2R 3845274..3845464 1024..1214 100 -> Plus
arm_2R 3845523..3845759 1215..1451 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:57:29 Download gff for LP04135.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7958097..7958914 206..1023 100 -> Plus
2R 7958968..7959158 1024..1214 100 -> Plus
2R 7959217..7959453 1215..1451 100   Plus
2R 7957835..7958039 1..205 100 -> Plus

LP04135.hyp Sequence

Translation from 199 to 1293

> LP04135.hyp
MLNSLPCSLLDHPKLKYVFLKRVKPKKHHEIIRMAEICALSQQKTPVDFI
VDFGAGVGHLARVLGYGYGLRVCCYEMQPDLNQQAREIDLKLESMAAKHL
SEDETTHFQRPVHLTHRLESSTKPEQFLSSIRQALQLTDDNFRFGVIGLH
PCGNLGPTLMRMFLGCPQAKFLNFVGCCYQKMTTQSTHPREHVHGYPLSS
ELKDKNECQLSYEAREISCHAMEVYHDRLRMGDYQHLRIHSLRAAAERII
VHQFPELRHCALRNVKYSPGMTFHQYFQKAVQGTRFEALDSRTLSNQQTE
TDLANWQRIVSFYTLRLMMAPLVESIILYDRCLFLMENDCQVQIEAIFDP
RLSPRNHITRAVKP*

LP04135.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2906-PE 364 CG2906-PE 1..364 1..364 1940 100 Plus
CG2906-PD 456 CG2906-PD 95..456 3..364 1931 100 Plus
CG33964-PA 494 CG33964-PA 122..489 26..363 212 25.9 Plus

LP04135.pep Sequence

Translation from 199 to 1293

> LP04135.pep
MLNSLPCSLLDHPKLKYVFLKRVKPKKHHEIIRMAEICALSQQKTPVDFI
VDFGAGVGHLARVLGYGYGLRVCCYEMQPDLNQQAREIDLKLESMAAKHL
SEDETTHFQRPVHLTHRLESSTKPEQFLSSIRQALQLTDDNFRFGVIGLH
PCGNLGPTLMRMFLGCPQAKFLNFVGCCYQKMTTQSTHPREHVHGYPLSS
ELKDKNECQLSYEAREISCHAMEVYHDRLRMGDYQHLRIHSLRAAAERII
VHQFPELRHCALRNVKYSPGMTFHQYFQKAVQGTRFEALDSRTLSNQQTE
TDLANWQRIVSFYTLRLMMAPLVESIILYDRCLFLMENDCQVQIEAIFDP
RLSPRNHITRAVKP*

LP04135.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13650-PA 444 GF13650-PA 80..441 3..364 1614 81.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23319-PA 465 GG23319-PA 95..430 3..338 1674 92 Plus
Dere\GG20255-PA 492 GG20255-PA 119..490 23..364 184 26.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20605-PA 462 GH20605-PA 100..461 4..363 1278 65.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2906-PE 364 CG2906-PE 1..364 1..364 1940 100 Plus
CG2906-PD 456 CG2906-PD 95..456 3..364 1931 100 Plus
CG33964-PA 494 CG33964-PA 122..489 26..363 212 25.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20447-PA 454 GI20447-PA 69..435 4..359 1246 64.8 Plus
Dmoj\GI20589-PA 495 GI20589-PA 151..493 49..363 165 26.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11477-PA 470 GL11477-PA 100..458 4..363 1428 72.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15509-PA 470 GA15509-PA 100..458 4..363 1418 71.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20996-PA 456 GM20996-PA 95..456 3..364 1894 96.7 Plus
Dsec\GM21342-PA 494 GM21342-PA 119..490 23..364 168 25.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10527-PA 456 GD10527-PA 95..456 3..364 1900 97 Plus
Dsim\GD10526-PA 367 GD10526-PA 95..367 3..275 1431 96.7 Plus
Dsim\GD15405-PA 494 GD15405-PA 119..490 23..364 166 25.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20117-PA 436 GJ20117-PA 102..432 6..338 1265 69.1 Plus
Dvir\GJ20770-PA 493 GJ20770-PA 104..493 5..364 220 25.1 Plus
Dvir\GJ20414-PA 474 GJ20414-PA 106..473 21..363 167 24.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15844-PA 413 GK15844-PA 72..409 3..337 1209 65.7 Plus
Dwil\GK10627-PA 417 GK10627-PA 58..415 13..363 156 22.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19163-PA 463 GE19163-PA 93..428 3..338 1658 90.8 Plus
Dyak\GE12415-PA 492 GE12415-PA 119..490 23..364 177 25.8 Plus