Clone LP04141 Report

Search the DGRC for LP04141

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:41
Well:41
Vector:pOT2
Associated Gene/TranscriptCG6488-RA
Protein status:LP04141.pep: gold
Sequenced Size:1860

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6488 2008-04-29 Release 5.5 accounting
CG6488 2008-04-29 Picked prior to 5.5
CG6488 2008-08-15 Release 5.9 accounting
CG6488 2008-12-18 5.12 accounting

Clone Sequence Records

LP04141.complete Sequence

1860 bp assembled on 2007-12-03

GenBank Submission: BT031276

> LP04141.complete
ATTGGATAATTTTTGATTTATAATTGAAAACAATGGACTTTCCGGACAAA
ATGGATTTGGAGAACGAGAGGGTACTGAAGCTGATATTCCCCGACGGTGT
GCCAGACAATCTGCGTGGCAATCCGGAGCTGGATAACTACCTCGCCAAAC
TGGGTACCTGCAAGGTGGAGCAGCTGAAGAAGGAGCAGACGCGACTGGCG
GAAGAGGCGCGCACCATTCTGGAGCAGACACAGGATCTGGCCATCTCCAA
CTACAGAACTTTCATCACCACCGCGGAGAACTCGCGTTCGATTTTCAGCG
AGTTCCTGCGATCGGAGCAGCAGCTGGACACACTGGTGTCCAAGCTTCCC
GACCTCAGTGTCCAGTGCGAACGCTTCCTGCAGGACTCCGCCGAGCTGAA
TGAGCAACGGCGACTGAATTCCATTACCCTGCAAAAGAACGCCCAGTTGC
TGGAAGTTCTCGAACTGCCGCAACTCATGGAGCGCTGTATTCGCGAGGGC
CGCTACGAGGAGGCTCTGGAACTGGCCGCCTACGCCACCCGCTTGGGCCA
GCACCAGGGACACATTCCCGTGGTCACAAGCATTGTGCGCTCCGTGGAAG
CCCTGTGGCACAACATGCTGGTGCAGCTGGTTGCACAACTGCGGACGGAT
CTCCAGCTACCCAAGTGCCTGCAAATCGTGGGCTATCTTCGACGGATGCA
GGCATTCGGTGACAACGAACTGCGATTGAAGTTTCTGCAGGCAAGGGACG
CGTGGTTAACTTCTTGCCTGGAGGCCATACCCACTGCAGATGCCCAGCAG
CATCTATCGAAAACCATCGAGATTACTCGCATAAATCTGTTCAATATAAT
CACCCAGTATCGCGCAATTTTCCCGGAAGACGAGGGCACTCTAAAGACTC
AGAGTTCTTTAAGACCGCTGCAGGGCGTCAGCTGCAACGGTGACAGACTT
TTTCAGGCCTGGCTGCACAATAAGATCAGCGACTTTCTGCAGACTCTGGA
ACGTGATCTACAGCTAGGAGTTGGCTCCGTCGAAACAGTGCTTGGGCAGT
GCATGTACTTTGGGCTGTCGTTTAGCCGTGTCGGCGCTGATTTTCGTGCC
CTTATGGCTCCAATTTTCGTGGGCGTGATCCGCCGTCGCTTTGAGAGCAG
CGTGGAACAGGTCGACGAGCAGTTCGAGCGGGAACTGGAGAGATTCACCT
TGATCAACAAGGTGGCGCTGCACTCTCACGCCCGCAAGCAGGTTGATCCC
GAGCAGGAGTCCTACGCGCCGCCCGAAGCTCTATTGGATTTCTATCCCCT
GGCCGCTTTGTGCAATGGCTATCTGAGCGCGTTGAACGAGCTGCGTCTGT
GTGCTCCCTTGGCCTTGGCCACCGATGTTACCCGCTGTCTGCAGCACTCC
CTGCAACAGGCTGCTCAGCGTGTGCTTGCCTTTTATCGGCAAGAGCAGCA
GGCCTTCGCCGGCAGCGAACGAGAGGCATTTGTTCGGCTCTGCTCATGTC
TGGCCTACGACCTGGTACCCTATATTCAGAGGTGCATCCATGGAGTCTTC
CCCCCGCAGTCGCTAACCGTTCACTTGGGCATTAGCTTGCTTCAGCTGGA
GCAACAGCAGCTCACCTACTTGCAGCAGACTCGCATTCTTGAGCCCTTGA
AGCACTTACTGCCGACCAAGGCACTGGTGCAGCCCCAGGATAAAGTGATG
GAGGCTAAGCCAAGCGCTGGGGTGCCTGTCACTGCCGAGGGATAAAGCAG
TCCAACGCAATATTAGTTGTTAAATATATTCCAATATTTATAAATATACC
TACCCTTAAAGGCATAAAGTTTAATTATACTATAAACTTTTGAAAAAAAA
AAAAAAAAAA

LP04141.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6488-RA 2059 CG6488-RA 206..2052 1..1847 9235 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11495527..11496396 1842..973 4275 99.4 Minus
chr2L 23010047 chr2L 11496990..11497465 578..103 2380 100 Minus
chr2L 23010047 chr2L 11496718..11496931 792..579 980 97.2 Minus
chr2L 23010047 chr2L 11496453..11496635 974..792 885 98.9 Minus
chr2L 23010047 chr2L 11497533..11497637 105..1 480 97.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:48:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11496799..11497673 1847..973 4375 100 Minus
2L 23513712 2L 11498267..11498742 578..103 2380 100 Minus
2L 23513712 2L 11497995..11498208 792..579 1070 100 Minus
2L 23513712 2L 11497730..11497912 974..792 915 100 Minus
2L 23513712 2L 11498810..11498914 105..1 525 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11496799..11497673 1847..973 4375 100 Minus
2L 23513712 2L 11498267..11498742 578..103 2380 100 Minus
2L 23513712 2L 11497995..11498208 792..579 1070 100 Minus
2L 23513712 2L 11497730..11497912 974..792 915 100 Minus
2L 23513712 2L 11498810..11498914 105..1 525 100 Minus
Blast to na_te.dros performed 2019-03-16 15:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 6165..6242 1759..1836 128 65.8 Plus

LP04141.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:34:00 Download gff for LP04141.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11495527..11496394 975..1842 99 <- Minus
chr2L 11496453..11496634 793..974 98 <- Minus
chr2L 11496718..11496931 579..792 97 <- Minus
chr2L 11496990..11497462 106..578 100 <- Minus
chr2L 11497533..11497637 1..105 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:35:29 Download gff for LP04141.complete
Subject Subject Range Query Range Percent Splice Strand
CG6488-RA 1..1713 33..1745 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:05:21 Download gff for LP04141.complete
Subject Subject Range Query Range Percent Splice Strand
CG6488-RA 1..1713 33..1745 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:48:03 Download gff for LP04141.complete
Subject Subject Range Query Range Percent Splice Strand
CG6488-RA 1..1713 33..1745 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:51:39 Download gff for LP04141.complete
Subject Subject Range Query Range Percent Splice Strand
CG6488-RA 1..1713 33..1745 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:48:47 Download gff for LP04141.complete
Subject Subject Range Query Range Percent Splice Strand
CG6488-RA 1..1713 33..1745 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:58:29 Download gff for LP04141.complete
Subject Subject Range Query Range Percent Splice Strand
CG6488-RA 206..2047 1..1842 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:05:21 Download gff for LP04141.complete
Subject Subject Range Query Range Percent Splice Strand
CG6488-RA 206..2047 1..1842 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:48:03 Download gff for LP04141.complete
Subject Subject Range Query Range Percent Splice Strand
CG6488-RA 35..1876 1..1842 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:51:39 Download gff for LP04141.complete
Subject Subject Range Query Range Percent Splice Strand
CG6488-RA 206..2047 1..1842 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:48:47 Download gff for LP04141.complete
Subject Subject Range Query Range Percent Splice Strand
CG6488-RA 35..1876 1..1842 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:34:00 Download gff for LP04141.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11496804..11497671 975..1842 100 <- Minus
2L 11497730..11497911 793..974 100 <- Minus
2L 11497995..11498208 579..792 100 <- Minus
2L 11498267..11498739 106..578 100 <- Minus
2L 11498810..11498914 1..105 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:34:00 Download gff for LP04141.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11496804..11497671 975..1842 100 <- Minus
2L 11497730..11497911 793..974 100 <- Minus
2L 11497995..11498208 579..792 100 <- Minus
2L 11498267..11498739 106..578 100 <- Minus
2L 11498810..11498914 1..105 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:34:00 Download gff for LP04141.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11496804..11497671 975..1842 100 <- Minus
2L 11497730..11497911 793..974 100 <- Minus
2L 11497995..11498208 579..792 100 <- Minus
2L 11498267..11498739 106..578 100 <- Minus
2L 11498810..11498914 1..105 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:48:03 Download gff for LP04141.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11497995..11498208 579..792 100 <- Minus
arm_2L 11496804..11497671 975..1842 100 <- Minus
arm_2L 11497730..11497911 793..974 100 <- Minus
arm_2L 11498267..11498739 106..578 100 <- Minus
arm_2L 11498810..11498914 1..105 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:57:30 Download gff for LP04141.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11496804..11497671 975..1842 100 <- Minus
2L 11497730..11497911 793..974 100 <- Minus
2L 11497995..11498208 579..792 100 <- Minus
2L 11498267..11498739 106..578 100 <- Minus
2L 11498810..11498914 1..105 100   Minus

LP04141.hyp Sequence

Translation from 32 to 1744

> LP04141.hyp
MDFPDKMDLENERVLKLIFPDGVPDNLRGNPELDNYLAKLGTCKVEQLKK
EQTRLAEEARTILEQTQDLAISNYRTFITTAENSRSIFSEFLRSEQQLDT
LVSKLPDLSVQCERFLQDSAELNEQRRLNSITLQKNAQLLEVLELPQLME
RCIREGRYEEALELAAYATRLGQHQGHIPVVTSIVRSVEALWHNMLVQLV
AQLRTDLQLPKCLQIVGYLRRMQAFGDNELRLKFLQARDAWLTSCLEAIP
TADAQQHLSKTIEITRINLFNIITQYRAIFPEDEGTLKTQSSLRPLQGVS
CNGDRLFQAWLHNKISDFLQTLERDLQLGVGSVETVLGQCMYFGLSFSRV
GADFRALMAPIFVGVIRRRFESSVEQVDEQFERELERFTLINKVALHSHA
RKQVDPEQESYAPPEALLDFYPLAALCNGYLSALNELRLCAPLALATDVT
RCLQHSLQQAAQRVLAFYRQEQQAFAGSEREAFVRLCSCLAYDLVPYIQR
CIHGVFPPQSLTVHLGISLLQLEQQQLTYLQQTRILEPLKHLLPTKALVQ
PQDKVMEAKPSAGVPVTAEG*

LP04141.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6488-PA 570 CG6488-PA 1..570 1..570 2900 100 Plus

LP04141.pep Sequence

Translation from 32 to 1744

> LP04141.pep
MDFPDKMDLENERVLKLIFPDGVPDNLRGNPELDNYLAKLGTCKVEQLKK
EQTRLAEEARTILEQTQDLAISNYRTFITTAENSRSIFSEFLRSEQQLDT
LVSKLPDLSVQCERFLQDSAELNEQRRLNSITLQKNAQLLEVLELPQLME
RCIREGRYEEALELAAYATRLGQHQGHIPVVTSIVRSVEALWHNMLVQLV
AQLRTDLQLPKCLQIVGYLRRMQAFGDNELRLKFLQARDAWLTSCLEAIP
TADAQQHLSKTIEITRINLFNIITQYRAIFPEDEGTLKTQSSLRPLQGVS
CNGDRLFQAWLHNKISDFLQTLERDLQLGVGSVETVLGQCMYFGLSFSRV
GADFRALMAPIFVGVIRRRFESSVEQVDEQFERELERFTLINKVALHSHA
RKQVDPEQESYAPPEALLDFYPLAALCNGYLSALNELRLCAPLALATDVT
RCLQHSLQQAAQRVLAFYRQEQQAFAGSEREAFVRLCSCLAYDLVPYIQR
CIHGVFPPQSLTVHLGISLLQLEQQQLTYLQQTRILEPLKHLLPTKALVQ
PQDKVMEAKPSAGVPVTAEG*

LP04141.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15121-PA 576 GF15121-PA 1..576 1..570 2565 87.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10309-PA 570 GG10309-PA 1..570 1..570 2935 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13522-PA 570 GH13522-PA 1..570 7..570 2309 77.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6488-PA 570 CG6488-PA 1..570 1..570 2900 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18138-PA 573 GI18138-PA 1..573 1..570 2293 76.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18564-PA 572 GL18564-PA 1..572 7..570 2461 83.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19631-PA 572 GA19631-PA 1..572 7..570 2461 83.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11064-PA 570 GM11064-PA 1..570 1..570 2966 98.4 Plus
Dsec\GM19683-PA 218 GM19683-PA 3..218 25..240 1100 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22172-PA 570 GD22172-PA 1..570 1..570 2978 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14899-PA 574 GJ14899-PA 1..556 1..550 2318 77.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23209-PA 566 GK23209-PA 1..566 7..570 2338 77.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12861-PA 570 GE12861-PA 1..570 1..570 2950 97.7 Plus