Clone LP04163 Report

Search the DGRC for LP04163

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:41
Well:63
Vector:pOT2
Associated Gene/Transcriptsgll-RA
Protein status:LP04163.pep: gold
Preliminary Size:1587
Sequenced Size:1251

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2649 2002-01-01 Sim4 clustering to Release 2
CG31472 2002-05-18 Blastp of sequenced clone
CG31472 2008-04-29 Release 5.5 accounting
CG31472 2008-08-15 Release 5.9 accounting
CG31472 2008-12-18 5.12 accounting

Clone Sequence Records

LP04163.complete Sequence

1251 bp (1251 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119015

> LP04163.complete
ACTAAGCGCAAACAAGTCTTGCATTTTGCAATAAATTCTCTAACCGGTTT
TGTTATTGTTTTGGTGCTCAAGTACCGCAGAAAAGCTCATATCTGACCTT
GAATAATGAAGTTGCTGCAAACAATTCGAAGGATGAGCCAAGGTGCCTCG
GAGGTGCCACTTTCGGCACTTCGTCTGAAGTACTGTGAGCGCAAGGACGC
CTTCCTGGAGGATAACATCAAGGTGAAGAATCCCTTCTGTGTATTCCGAG
ACTGGCTGGAGTTGGCGCTGAAAACCCCGGAGATCTTGGAGCCCAATGCC
GCCGCCCTGGCTACCGTGAGTGCGGAGGGTAGGCCTTCCAATCGCTATGT
GCTGGTTAAAGAAGCCACCGCCGAGGGATTCACCTTCTTCACGAACTACG
GTAGCCGCAAGGCTGAGGACATCAAGTCCAATCCCTATGTAGCCATATCC
TTCTACTGGCTCCCTTTGCGGCGAAGTGTCCGCATCGAGGGCGTGGCTGA
GAAGATCTCGGTGGAAGACTCCCTCAAGTACTTCCACCAGCGACCAAGAG
CCAGCCAAATCGGAGCCGCTGCCAGTCCGCAGAGCCAGCGGATTCCGTCG
CGCAGCTACTTGGACGACGTGGAGGCGGCAATTAAGCTAGAACTGGGTCC
CGATGGCGAGGTGCCGCTGCCCAACTGGGGTGGCTACTTGGTGCGTCCCG
ACCTCATTGAGTTCTGGCAGGGTCAGACCGATCGGCTCCACGATCGCATC
CGCTTTAGACGAGGTGGAGGAGTAGAATCCGAAGTCGACAGCAAACTGGT
TCACAAAGGAGAGGATGGTTGGGTGTACGAACGGCTGGCTCCTTAGGCAC
TGGGTTCTGGAGTTCAGCTACAGATGCATTGAAAATGTCTTCCAAATTAA
GTTGTTATGCGCAGGATAATAGAGGAACGTTTAAAGCTGCTTCAAAATAA
ATGTTAAGACATAACCAACAACTATGTACATCTGTACAAGCTTAACTACC
AAATACAAATTTAAGATTGCCTTTAAATATTGTCATAAGGTGTAAGTGAA
ATTACAATTCCTTTTTAAATTTGAAAGTACACTAGCTAAGATCACATCCT
AAAATATGGCTTATAGCCCTTAAAAAAGTTGGACAAGTAGCCTAAGCATT
TTTTATCCGTTGCCTTGAAGTGCGTTATAAATTGTAGAGCATATTAAAAA
TTACTATGTCGACTGTTTTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A

LP04163.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31472-RA 1222 CG31472-RA 1..1222 1..1222 6110 100 Plus
CG31472-RB 1288 CG31472-RB 173..1288 107..1222 5580 100 Plus
CG31473-RA 1027 CG31473-RA 1..151 1078..1228 740 99.3 Plus
CG31472-RB 1288 CG31472-RB 6..111 1..106 530 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3636907..3637963 166..1222 5225 99.6 Plus
chr3R 27901430 chr3R 3636614..3636719 1..106 530 100 Plus
chr3R 27901430 chr3R 3636781..3636840 107..166 300 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:48:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7810856..7811918 166..1228 5300 99.9 Plus
3R 32079331 3R 7810563..7810668 1..106 530 100 Plus
3R 32079331 3R 7810730..7810789 107..166 300 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7551687..7552749 166..1228 5300 99.9 Plus
3R 31820162 3R 7551394..7551499 1..106 530 100 Plus
3R 31820162 3R 7551561..7551620 107..166 300 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:16:03 has no hits.

LP04163.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:17:10 Download gff for LP04163.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3636614..3636719 1..106 100 -> Plus
chr3R 3636781..3636840 107..166 100 -> Plus
chr3R 3636908..3637963 167..1222 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:35:31 Download gff for LP04163.complete
Subject Subject Range Query Range Percent Splice Strand
CG31472-RA 1..741 106..846 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:43:06 Download gff for LP04163.complete
Subject Subject Range Query Range Percent Splice Strand
CG31472-RA 1..741 106..846 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:11:14 Download gff for LP04163.complete
Subject Subject Range Query Range Percent Splice Strand
CG31472-RA 1..741 106..846 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:35:15 Download gff for LP04163.complete
Subject Subject Range Query Range Percent Splice Strand
CG31472-RA 1..741 106..846 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:41 Download gff for LP04163.complete
Subject Subject Range Query Range Percent Splice Strand
sgll-RA 1..741 106..846 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:17:31 Download gff for LP04163.complete
Subject Subject Range Query Range Percent Splice Strand
CG31472-RA 1..1222 1..1222 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:43:06 Download gff for LP04163.complete
Subject Subject Range Query Range Percent Splice Strand
CG31472-RA 1..1222 1..1222 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:11:14 Download gff for LP04163.complete
Subject Subject Range Query Range Percent Splice Strand
CG31472-RA 1..1222 1..1222 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:35:15 Download gff for LP04163.complete
Subject Subject Range Query Range Percent Splice Strand
CG31472-RA 1..1222 1..1222 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:41 Download gff for LP04163.complete
Subject Subject Range Query Range Percent Splice Strand
sgll-RA 32..1253 1..1222 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:10 Download gff for LP04163.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7810563..7810668 1..106 100 -> Plus
3R 7810730..7810789 107..166 100 -> Plus
3R 7810857..7811912 167..1222 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:10 Download gff for LP04163.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7810563..7810668 1..106 100 -> Plus
3R 7810730..7810789 107..166 100 -> Plus
3R 7810857..7811912 167..1222 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:10 Download gff for LP04163.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7810563..7810668 1..106 100 -> Plus
3R 7810730..7810789 107..166 100 -> Plus
3R 7810857..7811912 167..1222 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:11:14 Download gff for LP04163.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3636285..3636390 1..106 100 -> Plus
arm_3R 3636452..3636511 107..166 100 -> Plus
arm_3R 3636579..3637634 167..1222 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:07:36 Download gff for LP04163.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7551688..7552743 167..1222 100   Plus
3R 7551394..7551499 1..106 100 -> Plus
3R 7551561..7551620 107..166 100 -> Plus

LP04163.hyp Sequence

Translation from 105 to 845

> LP04163.hyp
MKLLQTIRRMSQGASEVPLSALRLKYCERKDAFLEDNIKVKNPFCVFRDW
LELALKTPEILEPNAAALATVSAEGRPSNRYVLVKEATAEGFTFFTNYGS
RKAEDIKSNPYVAISFYWLPLRRSVRIEGVAEKISVEDSLKYFHQRPRAS
QIGAAASPQSQRIPSRSYLDDVEAAIKLELGPDGEVPLPNWGGYLVRPDL
IEFWQGQTDRLHDRIRFRRGGGVESEVDSKLVHKGEDGWVYERLAP*

LP04163.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
sgll-PA 246 CG31472-PA 1..246 1..246 1279 100 Plus
sgll-PB 237 CG31472-PB 1..237 10..246 1237 100 Plus
CG31473-PA 257 CG31473-PA 39..252 35..242 289 33.6 Plus

LP04163.pep Sequence

Translation from 105 to 845

> LP04163.pep
MKLLQTIRRMSQGASEVPLSALRLKYCERKDAFLEDNIKVKNPFCVFRDW
LELALKTPEILEPNAAALATVSAEGRPSNRYVLVKEATAEGFTFFTNYGS
RKAEDIKSNPYVAISFYWLPLRRSVRIEGVAEKISVEDSLKYFHQRPRAS
QIGAAASPQSQRIPSRSYLDDVEAAIKLELGPDGEVPLPNWGGYLVRPDL
IEFWQGQTDRLHDRIRFRRGGGVESEVDSKLVHKGEDGWVYERLAP*

LP04163.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16863-PA 237 GF16863-PA 1..237 10..246 1110 87.3 Plus
Dana\GF16862-PA 232 GF16862-PA 1..232 10..246 882 70.9 Plus
Dana\GF18174-PA 260 GF18174-PA 49..256 40..242 285 30.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14208-PA 237 GG14208-PA 1..237 10..246 1208 96.2 Plus
Dere\GG14219-PA 257 GG14219-PA 39..252 35..242 290 33.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18971-PA 238 GH18971-PA 1..238 10..246 953 77.7 Plus
Dgri\GH18972-PA 221 GH18972-PA 9..214 40..242 308 33.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
sgll-PA 246 CG31472-PA 1..246 1..246 1279 100 Plus
sgll-PB 237 CG31472-PB 1..237 10..246 1237 100 Plus
CG31473-PA 257 CG31473-PA 39..252 35..242 289 33.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24131-PA 237 GI24131-PA 1..237 10..246 995 80.6 Plus
Dmoj\GI24132-PA 260 GI24132-PA 47..254 35..242 275 31.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12458-PA 237 GL12458-PA 1..237 10..246 1069 83.1 Plus
Dper\GL12459-PA 260 GL12459-PA 40..253 35..242 326 35.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27512-PA 237 GA27512-PA 1..237 10..246 1071 83.1 Plus
Dpse\GA16274-PA 260 GA16274-PA 40..253 35..242 326 35.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10975-PA 237 GM10975-PA 1..237 10..246 1227 98.3 Plus
Dsec\GM10976-PA 257 GM10976-PA 39..252 35..242 294 33.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19951-PA 237 GD19951-PA 1..237 10..246 1230 98.3 Plus
Dsim\GD19952-PA 257 GD19952-PA 39..252 35..242 293 33.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10954-PA 237 GJ10954-PA 1..237 10..246 1037 81.9 Plus
Dvir\GJ10955-PA 237 GJ10955-PA 22..227 37..242 252 30.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12024-PA 237 GK12024-PA 1..237 10..246 1073 84.4 Plus
Dwil\GK12025-PA 263 GK12025-PA 40..257 34..242 323 33 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11187-PA 237 GE11187-PA 1..237 10..246 1198 95.4 Plus
Dyak\GE24943-PA 237 GE24943-PA 1..237 10..246 1190 95.4 Plus
Dyak\GE11188-PA 257 GE11188-PA 39..252 35..242 288 33.2 Plus