BDGP Sequence Production Resources |
Search the DGRC for LP04237
Library: | LP |
Tissue Source: | Drosophila melanogaster larval-early pupal |
Created by: | Ling Hong |
Date Registered: | 1998-06-11 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 42 |
Well: | 37 |
Vector: | pOT2 |
Associated Gene/Transcript | TfIIA-L-RB |
Protein status: | LP04237.pep: gold |
Sequenced Size: | 1594 |
Gene | Date | Evidence |
---|---|---|
TfIIA-L-RA | 2010-11-11 | Gleaning Pick By Joe Carlson |
1594 bp assembled on 2010-12-10
GenBank Submission: BT126001.1
> LP04237.complete AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGCTAATTCTTCGCTTCGCCCATTTATAATTCAGCAAA TACGTCAATTAGCCCCACCAGCGAACGGAAAAGCCTCAAGCTGGCGGAGA AAAAGGTCCAAATGGCGCTATGCCAGACATCGGTGCTGAAGGTGTACCAT GCCGTGATCGAGGACGTCATCACAAATGTGCGGGACGCGTTCCTGGACGA GGGCGTCGACGAACAGGTGCTGCAGGAGATGAAGCAGGTCTGGCGCAACA AGTTGCTTGCTAGCAAGGCCGTCGAGCTGAGCCCGGACTCCGGCGATGGC TCCCATCCGCCACCCATCGTGGCCAACAATCCAAAGGCAGCGAATGCCAA GGCCAAGAAGGCCGCCGCCGCAACCGCGGTCACATCACACCAACATATCG GCGGCAACAGCTCCATGTCCTCGCTGGTGGGGCTTAAGTCGTCCGCTGGA ATGGCCGCCGGCAGCGGCATAAGGAACGGGCTGGTGCCCATCAAGCAGGA AGTCAACTCACAGAATCCACCGCCACTGCATCCTACCTCGGCTGCAAGCA TGATGCAGAAACAGCAGCAGGCGGCGAGCAGTGGACAGGGTTCCATTCCA ATTGTGGCCACGCTGGACCCCAATCGCATTATGCCTGTTAACATCACGCT GCCATCGCCAGCCGGCTCTGCCAGTTCGGAATCTCGAGTGCTCACCATAC AAGTGCCTGCCTCCGCGCTGCAGGAGAATCAGTTGACCCAAATTCTGACG GCCCACCTGATTTCATCCATCATGTCCTTGCCCACCACGTTGGCCTCGTC TGTGCTTCAGCAGCACGTAAACGCAGCGCTAAGCAGCGCCAATCACCAGA AAACTCTTGCCGCCGCCAAGCAATTGGACGGTGCCCTGGACTCCTCCGAT GAGGATGAAAGCGAGGAGAGCGACGACAACATCGACAACGATGACGACGA TGACCTAGACAAGGACGATGACGAGGATGCGGAGCACGAGGATGCTGCCG AGGAGGAGCCGCTCAACAGCGAAGACGATGTCACCGACGAAGACTCTGCC GAAATGTTTGACACAGATAACGTGATTGTTTGTCAGTACGATAAGATCAC CAGGTCGCGAAACAAATGGAAATTCTATCTCAAAGATGGCATCATGAACA TGCGGGGCAAGGACTACGTGTTCCAGAAATCGAATGGCGACGCCGAGTGG TAATGGATGGCAGTTGAGCGAACAGCGGCGGCAGTGTGAATATATATATT AACAAAAGACATCAAACAAAAAGCCTCATCGAATGCGCCTTCAGCCCTGG ACGACAATGGCTAACCAGACCGGACTCTGCATCACTGGGCAACATGACCA AGCAACACCGTCTGCACAGAAAGCAACGTACTCGGGCCGACACTGTATCT TATTTTAGTTCCATCTGTTTTGTATTACGATAGCTTAAGGGTGTGTTGCA ACCAACCATCTCGATTAAATGTATTAGAGTGCCGCATAACTTTTGTGTCA ATAAACAAAAACATTTGTGAAAGTTAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 23078962..23079393 | 1144..1575 | 2130 | 99.5 | Plus |
chr3R | 27901430 | chr3R | 23078018..23078325 | 385..692 | 1525 | 99.7 | Plus |
chr3R | 27901430 | chr3R | 23078656..23078900 | 901..1145 | 1225 | 100 | Plus |
chr3R | 27901430 | chr3R | 23078386..23078593 | 693..900 | 1040 | 100 | Plus |
chr3R | 27901430 | chr3R | 23077457..23077659 | 185..387 | 1015 | 100 | Plus |
chr3R | 27901430 | chr3R | 23076434..23076559 | 64..189 | 615 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 27256032..27256464 | 1144..1576 | 2165 | 100 | Plus |
3R | 32079331 | 3R | 27255088..27255395 | 385..692 | 1540 | 100 | Plus |
3R | 32079331 | 3R | 27255726..27255970 | 901..1145 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 27255456..27255663 | 693..900 | 1040 | 100 | Plus |
3R | 32079331 | 3R | 27254527..27254729 | 185..387 | 1015 | 100 | Plus |
3R | 32079331 | 3R | 27253504..27253629 | 64..189 | 615 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 26996863..26997295 | 1144..1576 | 2165 | 100 | Plus |
3R | 31820162 | 3R | 26995919..26996226 | 385..692 | 1540 | 100 | Plus |
3R | 31820162 | 3R | 26996557..26996801 | 901..1145 | 1225 | 100 | Plus |
3R | 31820162 | 3R | 26996287..26996494 | 693..900 | 1040 | 100 | Plus |
3R | 31820162 | 3R | 26995358..26995560 | 185..387 | 1015 | 100 | Plus |
3R | 31820162 | 3R | 26994335..26994460 | 64..189 | 615 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 556..611 | 933..991 | 135 | 72.9 | Plus |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 5723..5805 | 937..1022 | 116 | 62.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 23076434..23076555 | 64..185 | 100 | -> | Plus |
chr3R | 23077458..23077658 | 186..386 | 100 | -> | Plus |
chr3R | 23078020..23078325 | 387..692 | 99 | -> | Plus |
chr3R | 23078386..23078593 | 693..900 | 100 | -> | Plus |
chr3R | 23078656..23078701 | 901..946 | 100 | == | Plus |
chr3R | 23078850..23078900 | 1095..1145 | 100 | -> | Plus |
chr3R | 23078964..23079393 | 1146..1575 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIA-L-RB | 1..1092 | 162..1253 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIA-L-RB | 1..1092 | 162..1253 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIA-L-RB | 1..1092 | 162..1253 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIA-L-RB | 75..1586 | 64..1575 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIA-L-RB | 75..1586 | 64..1575 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIA-L-RB | 75..1586 | 64..1575 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27254528..27254728 | 186..386 | 100 | -> | Plus |
3R | 27255090..27255395 | 387..692 | 100 | -> | Plus |
3R | 27255456..27255663 | 693..900 | 100 | -> | Plus |
3R | 27255726..27255970 | 901..1145 | 100 | -> | Plus |
3R | 27256034..27256463 | 1146..1575 | 100 | Plus | |
3R | 27253504..27253625 | 64..185 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27254528..27254728 | 186..386 | 100 | -> | Plus |
3R | 27255090..27255395 | 387..692 | 100 | -> | Plus |
3R | 27255456..27255663 | 693..900 | 100 | -> | Plus |
3R | 27255726..27255970 | 901..1145 | 100 | -> | Plus |
3R | 27256034..27256463 | 1146..1575 | 100 | Plus | |
3R | 27253504..27253625 | 64..185 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 27254528..27254728 | 186..386 | 100 | -> | Plus |
3R | 27255090..27255395 | 387..692 | 100 | -> | Plus |
3R | 27255456..27255663 | 693..900 | 100 | -> | Plus |
3R | 27255726..27255970 | 901..1145 | 100 | -> | Plus |
3R | 27256034..27256463 | 1146..1575 | 100 | Plus | |
3R | 27253504..27253625 | 64..185 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 23079226..23079347 | 64..185 | 100 | -> | Plus |
arm_3R | 23080250..23080450 | 186..386 | 100 | -> | Plus |
arm_3R | 23080812..23081117 | 387..692 | 100 | -> | Plus |
arm_3R | 23081178..23081385 | 693..900 | 100 | -> | Plus |
arm_3R | 23081448..23081692 | 901..1145 | 100 | -> | Plus |
arm_3R | 23081756..23082185 | 1146..1575 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26995359..26995559 | 186..386 | 100 | -> | Plus |
3R | 26995921..26996226 | 387..692 | 100 | -> | Plus |
3R | 26996287..26996494 | 693..900 | 100 | -> | Plus |
3R | 26996557..26996801 | 901..1145 | 100 | -> | Plus |
3R | 26996865..26997294 | 1146..1575 | 100 | Plus | |
3R | 26994335..26994456 | 64..185 | 100 | -> | Plus |
Translation from 161 to 1252
> LP04237.pep MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLA SKAVELSPDSGDGSHPPPIVANNPKAANAKAKKAAAATAVTSHQHIGGNS SMSSLVGLKSSAGMAAGSGIRNGLVPIKQEVNSQNPPPLHPTSAASMMQK QQQAASSGQGSIPIVATLDPNRIMPVNITLPSPAGSASSESRVLTIQVPA SALQENQLTQILTAHLISSIMSLPTTLASSVLQQHVNAALSSANHQKTLA AAKQLDGALDSSDEDESEESDDNIDNDDDDDLDKDDDEDAEHEDAAEEEP LNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGK DYVFQKSNGDAEW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16279-PA | 364 | GF16279-PA | 1..364 | 1..363 | 1333 | 83.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11539-PA | 366 | GG11539-PA | 1..366 | 1..363 | 1513 | 91.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19494-PA | 369 | GH19494-PA | 1..369 | 1..363 | 1185 | 81.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TfIIA-L-PB | 363 | CG5930-PB | 1..363 | 1..363 | 1838 | 100 | Plus |
TfIIA-L-PA | 366 | CG5930-PA | 1..366 | 1..363 | 1824 | 99.2 | Plus |
TfIIA-L-PC | 324 | CG5930-PC | 1..324 | 40..363 | 1644 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22255-PA | 381 | GI22255-PA | 1..381 | 1..363 | 1178 | 76.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24482-PA | 177 | GL24482-PA | 1..177 | 1..175 | 490 | 60.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19238-PB | 359 | GA19238-PB | 1..359 | 1..363 | 1274 | 82.4 | Plus |
Dpse\GA19238-PA | 356 | GA19238-PA | 1..356 | 1..363 | 1237 | 84.3 | Plus |
Dpse\GA19238-PC | 317 | GA19238-PC | 1..317 | 40..363 | 1029 | 82.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10381-PA | 366 | GM10381-PA | 1..366 | 1..363 | 1871 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21332-PA | 115 | GD21332-PA | 6..115 | 254..363 | 564 | 98.2 | Plus |
Dsim\GD15189-PA | 81 | GD15189-PA | 1..77 | 1..77 | 404 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24046-PA | 379 | GJ24046-PA | 1..379 | 1..363 | 1151 | 78.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22574-PA | 379 | GK22574-PA | 1..379 | 1..363 | 1288 | 80.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23726-PA | 366 | GE23726-PA | 1..366 | 1..363 | 1528 | 92.3 | Plus |
Translation from 161 to 1252
> LP04237.hyp MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLA SKAVELSPDSGDGSHPPPIVANNPKAANAKAKKAAAATAVTSHQHIGGNS SMSSLVGLKSSAGMAAGSGIRNGLVPIKQEVNSQNPPPLHPTSAASMMQK QQQAASSGQGSIPIVATLDPNRIMPVNITLPSPAGSASSESRVLTIQVPA SALQENQLTQILTAHLISSIMSLPTTLASSVLQQHVNAALSSANHQKTLA AAKQLDGALDSSDEDESEESDDNIDNDDDDDLDKDDDEDAEHEDAAEEEP LNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGK DYVFQKSNGDAEW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TfIIA-L-PB | 363 | CG5930-PB | 1..363 | 1..363 | 1838 | 100 | Plus |
TfIIA-L-PA | 366 | CG5930-PA | 1..366 | 1..363 | 1824 | 99.2 | Plus |
TfIIA-L-PC | 324 | CG5930-PC | 1..324 | 40..363 | 1644 | 100 | Plus |