Clone LP04371 Report

Search the DGRC for LP04371

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:43
Well:71
Vector:pOT2
Associated Gene/TranscriptCG10426-RA
Protein status:LP04371.pep: gold
Preliminary Size:2652
Sequenced Size:3114

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10426 2002-01-01 Sim4 clustering to Release 2
CG10426 2002-06-04 Blastp of sequenced clone
CG10426 2003-01-01 Sim4 clustering to Release 3
CG10426 2008-04-29 Release 5.5 accounting
CG10426 2008-08-15 Release 5.9 accounting
CG10426 2008-12-18 5.12 accounting

Clone Sequence Records

LP04371.complete Sequence

3114 bp (3114 high quality bases) assembled on 2002-06-04

GenBank Submission: AY118603

> LP04371.complete
CGCACTTGCTCGGAGTTTTTGGGTGTAAACAACATTGGAACGCGCTCTCT
CGCCCCAAAGGATCTGCCCACATATGTGTTTTTTTTATTTAGTTGCTTGC
AGAACAGCACACGCAATCGCCGCCAGTCAGCCCAATTAGCCTGATTTCGT
GTACGTCATCGCCGAGCCCAAAATAATTTGCATTGCGACCAGCCAGAACG
CCGGACCAAAGTCGCATTTGCATTGTGCTCGCTCGATGACGTCTGGCTTT
ACTATTTATATGGCCGGCAGCCAGAGGCCATCGCACAATGAGCTCGGTTC
GAGAGATCCGGCAGATAGAGCGAATTAACTTGACAAAAGGGGGGCATGAT
AACCACTTAGCACCTTCACCTTAGATGATAGAATCATTTCGTTCGGACTA
AAGCCAACATGCAGCACAGCAGCGCGGGAAGTGAGGAACGGATAACCAGT
TCCACCAGCAGTCCCAGATCCGGTCACAAGACCGCGAGCTCCCTGTTCGG
TTTGCTGAGCAAGCGACCTAGTAAGGTGGAGCCACATCCCGTGACACCCG
AATCGCCAAGATTACAACAGAGACCCGTGTCCGCCTGTGGCCAATACGAT
GTCAGTTTCGCCAAGTGCAATGCAGATACGTCTGCAAACCATGTCAATAA
CAATGGGAGCACCCTCAAAAGCCAAACGCTGCCGCTGGAGAAGTCGCACA
GCGGGCTGATCAGCTTCCACAGGCGTGCAAAGCCAAGTTCCTCGAAAGGA
AAGAATCACTCGCACCGGCACAGTACGGATGCTGGTTCCCAAAGCGATGG
AGGAGCCGACGTGGTGATGCGGCGCAAGTCGCCCAAGCATCGCTCACCCA
ATCACAATAGATTTAGTCACCAGTTCAGTCTGTGCTGCAAGGCGGAAAAG
AAACCGATGACACCGCCGGTGACCGTGCGTTATAACTCCATACCGGATAG
CAACAGTGTTCTGCGGCGCGATAACCTCTCGCTAAGTTGGAGCATGGTGG
ACAACAACTCGGGCTCGCTGCACTCCAGCGAAGGATCCTCACACCGACCG
CGTCCGTCCAGTGAGTGTGCCAGTGCGCCAGAATCACCGGTGGCCAGCAA
AACCTTCTTTGCCCACTGCAGCCCTGCTGCGGCCAGCGCTTCGGTGGCAC
GGAGCGAAAGCCTTCAAAATCGCTCGCCCATTCGACCCATGGCAGTATCA
GCCTGCCGATCCCGACTGCGTTTAAAGCTCTATCCACCTGGACAAGAGTT
ACCCCCTCTTCAGGCAGCCACAGAACCTGGTGACATTAAAAGAGCCACCA
CACCACAGCACATGTCCTCGCCGAATATAGCCACTCAGCCAGATGGAATA
GAACACATAGAGGAGCAGCCAGGCGTGAGGTTTATGTCGCACGAGAACAT
GACACTCCAAAGACAGGGTTCGGGATCTAATCTGGCTCGCCAGACTTTAA
TGGCGGCACATGCATTGAATCTGATCCCGGCGGATAACGCCAGGGAGCGA
AGTTACCTGGATGGCAGGCTGGGATCAACTTCCCTTTTGGGTCCCAGTGA
GCTAAGCCGCGTGCTGCCGCAAAAGGAGATTACCGTCTTTGTGGGAACTT
GGAATATGAATGGCCACAGTCCACCCAAACAACTTAATGATTTTGTGCTG
CCAGCCAATGTGGAGCACGTGCCCGACATTGTGGTAATGGGCACACAGGA
GTCCACCCCAGACCGCTTCGAGTGGGAGGTCACCATTCAGGAGACCCTAG
GTCCCTCTCACGTGCTCTTCCATGCCACAACTCTGGGTACCCTCCACCTG
GCTGTGTATATGCGACGGGACTTGATCTGGTACTGCTCCGTTCCCGAGGA
CGCATCTATGTCGGTGCGCACGGGCTCCGCCTTTCGGACAAAGGGTGCCG
TGGCCATATCCTTTTGCCTGTTTGGCACTTCCATGCTGTTTGTGACCTCG
CATTTAACGGCGCACCAGCAGAAGGTTAAAGAGCGTGTGTCGGACGTTAA
GCGGATAATCAATGCTCTGGACTTGCCTCGCAATTTGCCCAATCAGCGGC
ATAAGAACAAAGATGTCACGCAGAACTTTGACAATGTCTTCTGGTGCGGC
GATCTTAACTTTCGACTGGGTGAGCCGCGTGAAAAGCTGCTGGAATGGAT
TCAGAACACCAAGTTCCCGCTGCCGTCGCATTTACCGCACGGTTACATGC
ACACGGATCAGTTGACTTCCGTTCTGGCTGATGGCGCCGCCTTCCGAGGA
TTTATGGAGGCGAACATCACATTTCCACCCACGTACAAGTACGATCCGGG
CAGCCAGAACTTTGATACCTCGTCGAAGCAGCGAGCTCCCGCCTACACGG
ATCGCATTCTCTACAAGTACCGCCAAATGCAGGGACTAGTCATCCGTCGG
CAGACCCTAGTGCCTGGTGTATCCACACCCACGCAGCCGCATGTCCAATG
TCTGCTCTATGACTCGGTGCCATCGATAACCACCTCGGACCACAAGCCAG
TTTGGGCGCTTTTTCGAACACTCATACGTGCAGGAACCGATGCAATTCCC
TTGGCTGCTGGGCTCTTCAGTCGCGACATTTATCTGGAGGGAATGCGTCG
ACGCTTGAATAACCAATATAGCGGCGCCTCCGCCGTTTGTGTGTTGCAGT
AAACTACTGAGATGCTAACCAAAGCTAGGCTTCCTAATGGCCGCCTACCC
ACGTTGAAATCTATTTAGTCATTTACTCGAATCTCAAAGTGCTAGTCAAA
GCTTTCCTACGGTTGTGCGACGCCTTTGTATTAACCCGATTAGATTGTTA
TCCAGTGCGCTGTCGGATATCGAAGTAACGATATAACCATTACTTACCCT
GCAATGCTGCGGTAGATCTTAGGCGCTGCCTTTCGCCTCGAGGCCTTAGT
CGTAATACGTTCCTTATGAGATTATCTAATACATACTCGTGCAACAATTC
TGTACCTCTACTCTGAAGCACAAGCTTAGTTCGTAGATAAACTAAATCTG
ATAGTTAAAGTTTAGTCAAATATTGAAATGAAATCGAAATATGAATTACT
TTGAATGTGTAATGTTAACTAGCAGTAAATATATTTTATGCATCTAAAAA
AAAAAAAAAAAAAA

LP04371.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10426-RA 3213 CG10426-RA 73..3170 1..3098 15490 100 Plus
CG10426.a 3152 CG10426.a 39..3140 1..3098 15425 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12268999..12270531 96..1628 7605 99.7 Plus
chr3L 24539361 chr3L 12270601..12271515 1629..2543 4545 99.8 Plus
chr3L 24539361 chr3L 12271577..12272128 2544..3095 2745 99.8 Plus
chr3L 24539361 chr3L 12268877..12268935 44..102 265 96.6 Plus
chr3L 24539361 chr3L 12268345..12268388 1..44 220 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:49:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12278347..12279879 96..1628 7650 99.9 Plus
3L 28110227 3L 12279949..12280863 1629..2543 4575 100 Plus
3L 28110227 3L 12280925..12281479 2544..3098 2775 100 Plus
3L 28110227 3L 12278225..12278283 44..102 295 100 Plus
3L 28110227 3L 12277693..12277736 1..44 220 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12271447..12272979 96..1628 7650 99.9 Plus
3L 28103327 3L 12273049..12273963 1629..2543 4575 100 Plus
3L 28103327 3L 12274025..12274579 2544..3098 2775 100 Plus
3L 28103327 3L 12271325..12271383 44..102 295 100 Plus
3L 28103327 3L 12270793..12270836 1..44 220 100 Plus
Blast to na_te.dros performed on 2019-03-15 13:56:50 has no hits.

LP04371.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:57:55 Download gff for LP04371.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12270601..12271515 1629..2543 99 -> Plus
chr3L 12268345..12268388 1..44 100 -> Plus
chr3L 12268878..12268935 45..102 96 -> Plus
chr3L 12269006..12270531 103..1628 99 -> Plus
chr3L 12271577..12272128 2544..3095 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:35:36 Download gff for LP04371.complete
Subject Subject Range Query Range Percent Splice Strand
CG10426-RA 1..2244 409..2652 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:32:48 Download gff for LP04371.complete
Subject Subject Range Query Range Percent Splice Strand
CG10426-RA 1..2244 409..2652 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:18:02 Download gff for LP04371.complete
Subject Subject Range Query Range Percent Splice Strand
CG10426-RA 1..2244 409..2652 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:23:37 Download gff for LP04371.complete
Subject Subject Range Query Range Percent Splice Strand
CG10426-RA 1..2244 409..2652 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:45:58 Download gff for LP04371.complete
Subject Subject Range Query Range Percent Splice Strand
CG10426-RA 1..2244 409..2652 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:03:23 Download gff for LP04371.complete
Subject Subject Range Query Range Percent Splice Strand
CG10426-RA 1..3095 1..3095 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:32:48 Download gff for LP04371.complete
Subject Subject Range Query Range Percent Splice Strand
CG10426-RA 1..3095 1..3095 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:18:02 Download gff for LP04371.complete
Subject Subject Range Query Range Percent Splice Strand
CG10426-RA 39..3133 1..3095 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:23:38 Download gff for LP04371.complete
Subject Subject Range Query Range Percent Splice Strand
CG10426-RA 1..3095 1..3095 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:45:58 Download gff for LP04371.complete
Subject Subject Range Query Range Percent Splice Strand
CG10426-RA 39..3133 1..3095 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:57:55 Download gff for LP04371.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12277693..12277736 1..44 100 -> Plus
3L 12278226..12278283 45..102 100 -> Plus
3L 12278354..12279879 103..1628 100 -> Plus
3L 12279949..12280863 1629..2543 100 -> Plus
3L 12280925..12281476 2544..3095 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:57:55 Download gff for LP04371.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12277693..12277736 1..44 100 -> Plus
3L 12278226..12278283 45..102 100 -> Plus
3L 12278354..12279879 103..1628 100 -> Plus
3L 12279949..12280863 1629..2543 100 -> Plus
3L 12280925..12281476 2544..3095 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:57:55 Download gff for LP04371.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12277693..12277736 1..44 100 -> Plus
3L 12278226..12278283 45..102 100 -> Plus
3L 12278354..12279879 103..1628 100 -> Plus
3L 12279949..12280863 1629..2543 100 -> Plus
3L 12280925..12281476 2544..3095 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:18:02 Download gff for LP04371.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12270793..12270836 1..44 100 -> Plus
arm_3L 12271326..12271383 45..102 100 -> Plus
arm_3L 12271454..12272979 103..1628 100 -> Plus
arm_3L 12273049..12273963 1629..2543 100 -> Plus
arm_3L 12274025..12274576 2544..3095 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:56:48 Download gff for LP04371.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12271454..12272979 103..1628 100 -> Plus
3L 12273049..12273963 1629..2543 100 -> Plus
3L 12274025..12274576 2544..3095 100   Plus
3L 12270793..12270836 1..44 100 -> Plus
3L 12271326..12271383 45..102 100 -> Plus

LP04371.pep Sequence

Translation from 408 to 2651

> LP04371.pep
MQHSSAGSEERITSSTSSPRSGHKTASSLFGLLSKRPSKVEPHPVTPESP
RLQQRPVSACGQYDVSFAKCNADTSANHVNNNGSTLKSQTLPLEKSHSGL
ISFHRRAKPSSSKGKNHSHRHSTDAGSQSDGGADVVMRRKSPKHRSPNHN
RFSHQFSLCCKAEKKPMTPPVTVRYNSIPDSNSVLRRDNLSLSWSMVDNN
SGSLHSSEGSSHRPRPSSECASAPESPVASKTFFAHCSPAAASASVARSE
SLQNRSPIRPMAVSACRSRLRLKLYPPGQELPPLQAATEPGDIKRATTPQ
HMSSPNIATQPDGIEHIEEQPGVRFMSHENMTLQRQGSGSNLARQTLMAA
HALNLIPADNARERSYLDGRLGSTSLLGPSELSRVLPQKEITVFVGTWNM
NGHSPPKQLNDFVLPANVEHVPDIVVMGTQESTPDRFEWEVTIQETLGPS
HVLFHATTLGTLHLAVYMRRDLIWYCSVPEDASMSVRTGSAFRTKGAVAI
SFCLFGTSMLFVTSHLTAHQQKVKERVSDVKRIINALDLPRNLPNQRHKN
KDVTQNFDNVFWCGDLNFRLGEPREKLLEWIQNTKFPLPSHLPHGYMHTD
QLTSVLADGAAFRGFMEANITFPPTYKYDPGSQNFDTSSKQRAPAYTDRI
LYKYRQMQGLVIRRQTLVPGVSTPTQPHVQCLLYDSVPSITTSDHKPVWA
LFRTLIRAGTDAIPLAAGLFSRDIYLEGMRRRLNNQYSGASAVCVLQ*

LP04371.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
INPP5E-PB 747 CG10426-PB 1..747 1..747 3923 100 Plus
INPP5E-PA 747 CG10426-PA 1..747 1..747 3923 100 Plus
Ocrl-PB 850 CG3573-PB 177..481 383..707 344 30 Plus
Ocrl-PA 850 CG3573-PA 177..481 383..707 344 30 Plus
Synj-PC 1218 CG6562-PC 565..860 398..701 332 32.1 Plus
Synj-PA 1218 CG6562-PA 565..860 398..701 332 32.1 Plus
Synj-PB 1218 CG6562-PB 565..860 398..701 332 32.1 Plus
CG6805-PB 348 CG6805-PB 9..314 390..708 291 28.3 Plus
CG6805-PA 357 CG6805-PA 9..314 390..708 291 28.3 Plus
CG9784-PB 508 CG9784-PB 33..339 393..702 269 29.3 Plus
CG9784-PA 508 CG9784-PA 33..339 393..702 269 29.3 Plus
CG9784-PC 519 CG9784-PC 33..339 393..702 269 29.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10312-PA 765 GA10312-PA 1..765 1..747 3476 87.1 Plus
Dpse\GA17531-PA 844 GA17531-PA 175..479 383..707 372 30.9 Plus
Dpse\GA19686-PA 1239 GA19686-PA 566..867 395..706 344 31.2 Plus
Dpse\GA22035-PA 507 GA22035-PA 36..339 393..702 278 30.6 Plus
Dpse\GA19874-PA 354 GA19874-PA 9..307 390..702 276 29.3 Plus

LP04371.hyp Sequence

Translation from 408 to 2651

> LP04371.hyp
MQHSSAGSEERITSSTSSPRSGHKTASSLFGLLSKRPSKVEPHPVTPESP
RLQQRPVSACGQYDVSFAKCNADTSANHVNNNGSTLKSQTLPLEKSHSGL
ISFHRRAKPSSSKGKNHSHRHSTDAGSQSDGGADVVMRRKSPKHRSPNHN
RFSHQFSLCCKAEKKPMTPPVTVRYNSIPDSNSVLRRDNLSLSWSMVDNN
SGSLHSSEGSSHRPRPSSECASAPESPVASKTFFAHCSPAAASASVARSE
SLQNRSPIRPMAVSACRSRLRLKLYPPGQELPPLQAATEPGDIKRATTPQ
HMSSPNIATQPDGIEHIEEQPGVRFMSHENMTLQRQGSGSNLARQTLMAA
HALNLIPADNARERSYLDGRLGSTSLLGPSELSRVLPQKEITVFVGTWNM
NGHSPPKQLNDFVLPANVEHVPDIVVMGTQESTPDRFEWEVTIQETLGPS
HVLFHATTLGTLHLAVYMRRDLIWYCSVPEDASMSVRTGSAFRTKGAVAI
SFCLFGTSMLFVTSHLTAHQQKVKERVSDVKRIINALDLPRNLPNQRHKN
KDVTQNFDNVFWCGDLNFRLGEPREKLLEWIQNTKFPLPSHLPHGYMHTD
QLTSVLADGAAFRGFMEANITFPPTYKYDPGSQNFDTSSKQRAPAYTDRI
LYKYRQMQGLVIRRQTLVPGVSTPTQPHVQCLLYDSVPSITTSDHKPVWA
LFRTLIRAGTDAIPLAAGLFSRDIYLEGMRRRLNNQYSGASAVCVLQ*

LP04371.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10426-PB 747 CG10426-PB 1..747 1..747 3923 100 Plus
CG10426-PA 747 CG10426-PA 1..747 1..747 3923 100 Plus
Ocrl-PB 850 CG3573-PB 177..481 383..707 344 30 Plus
Ocrl-PA 850 CG3573-PA 177..481 383..707 344 30 Plus
Synj-PC 1218 CG6562-PC 565..860 398..701 332 32.1 Plus