Clone LP04475 Report

Search the DGRC for LP04475

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:44
Well:75
Vector:pOT2
Associated Gene/TranscriptCG8031-RA
Protein status:LP04475.pep: gold
Preliminary Size:1316
Sequenced Size:1282

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8031 2001-01-01 Release 2 assignment
CG8031 2003-01-01 Sim4 clustering to Release 3
CG8031 2003-08-11 Blastp of sequenced clone
CG8031 2008-04-29 Release 5.5 accounting
CG8031 2008-08-15 Release 5.9 accounting
CG8031 2008-12-18 5.12 accounting

Clone Sequence Records

LP04475.complete Sequence

1282 bp (1282 high quality bases) assembled on 2003-08-11

GenBank Submission: AY061544

> LP04475.complete
CTCGTTTTTTCTACAAGTAACGGCCAGTTAATAGCTCTTACTAACTAAAC
AGACCGATTAGGGATCTCGCACAAAATGTCGGCCAGAAGAGCAACCCATG
CAGGCAGCTGGTACACGGACTCGGGCGCCGAGCTCTCGAGACAGTTGGAT
CGTTGGCTGGGTGCCGCAGATTTGTCCCATGGACCGGCTCGTGCCATCAT
TGCTCCACATGCTGGATATACGTACTGTGGAGCCTGCGCTGCCTTTGCCT
ATCGCCAAGTTAGCCCAGTTGTCGTCAAGCGAATCTTCATACTGGGTCCC
TCGCATCATGTGCGTCTGCGTGGCTGCGCCTTATCCGTGGCGAAGAAGTA
CAGGACACCCCTCTATGATCTCAAAATTGATGCTCAGATCAACTCTGAGC
TTGAGAAGACTGGAAAGTTTTCTTGGATGGACATGAAGACTGACGAGGAT
GAACACTCCATCGAGATGCATTTACCCTACATTGCCAAAGTGATGGAGGA
CTACAAGGATCAGTTCACCATTGTGCCTATTCTGGTGGGTTCGCTCAATC
CCGAACAGGAGGCGCAGTACGGCAGCCTGCTGTCCTCGTATCTGATGGAC
CCCACCAATCTGTTTGTGATATCTTCCGACTTTTGCCACTGGGGCCATCG
CTTCAGCTATACCTACTATGACAGCTCCTGCGGAGCGATTCACAAGTCCA
TCGAGAAGCTGGACAAGCAGGGCATGGACATCATTGAGTCGCTCAATCCG
CACTCCTTCACCGAGTACTTGCGCAAGTACAACAATACGATATGCGGACG
CCATCCCATCGGAGTAATGCTAGGCGCCGTGAAGGCACTGCAGGATCAGG
GCTACGACAAGATGAGTTTCAAGTTCCTCAAGTACGCCCAGAGCAGCCAG
TGTCAGGACATTGAGGACTCCAGCGTTAGCTACGCCTCCGGATCGCTCGT
CTTCGAGATGTGAAAGCACTCAAGTATTTTAGCCACTCGACGGCAACTAA
TTCTTGCTATTTAAGCGTAACGTTTTTATATTTACTAGCATCAAATTGAA
AATTTAACAATAAATCCAAAATCCCCAACCAGTTTCAATTTAGTCGGCAT
TGTTTTATCAATTATAACAAAATACAATTAACAATTAAAATCGCAAGGAG
AAATAAAGCTCATTTTGATAATTTAGCTTTGATTATTAGCATAGATTTAG
TTAATTTAAGGGGAATTGAATAAAAACACACAATCGCAGGATATGTGAAC
TTCCATTTGAGTTAAAAAAAAAAAAAAAAAAA

LP04475.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8031-RA 1422 CG8031-RA 159..1422 1..1264 6320 100 Plus
CG8031.a 1407 CG8031.a 532..1407 389..1264 4380 100 Plus
CG8031.a 1407 CG8031.a 78..465 1..388 1940 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8833636..8834398 1263..501 3800 99.9 Minus
chr3R 27901430 chr3R 8836383..8836507 125..1 625 100 Minus
chr3R 27901430 chr3R 8834634..8834746 388..276 565 100 Minus
chr3R 27901430 chr3R 8834456..8834567 500..389 545 99.1 Minus
chr3R 27901430 chr3R 8834941..8835023 206..124 415 100 Minus
chr3R 27901430 chr3R 8834811..8834879 275..207 345 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:49:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13008382..13009146 1265..501 3825 100 Minus
3R 32079331 3R 13011131..13011255 125..1 625 100 Minus
3R 32079331 3R 13009382..13009494 388..276 565 100 Minus
3R 32079331 3R 13009204..13009315 500..389 560 100 Minus
3R 32079331 3R 13009689..13009771 206..124 415 100 Minus
3R 32079331 3R 13009559..13009627 275..207 345 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12749213..12749977 1265..501 3825 100 Minus
3R 31820162 3R 12751962..12752086 125..1 625 100 Minus
3R 31820162 3R 12750213..12750325 388..276 565 100 Minus
3R 31820162 3R 12750035..12750146 500..389 560 100 Minus
3R 31820162 3R 12750520..12750602 206..124 415 100 Minus
3R 31820162 3R 12750390..12750458 275..207 345 100 Minus
Blast to na_te.dros performed 2019-03-16 18:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Penelope 4158 Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). 411..478 1187..1117 149 71.8 Minus
Dvir\Penelope 4158 Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). 3191..3258 1187..1117 149 71.8 Minus

LP04475.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:17:06 Download gff for LP04475.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8834456..8834567 389..500 99 <- Minus
chr3R 8834634..8834746 276..388 100 <- Minus
chr3R 8834811..8834879 207..275 100 <- Minus
chr3R 8834941..8835022 125..206 100 <- Minus
chr3R 8836384..8836507 1..124 100   Minus
chr3R 8833636..8834398 501..1263 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:35:42 Download gff for LP04475.complete
Subject Subject Range Query Range Percent Splice Strand
CG8031-RA 1..888 76..963 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:52:56 Download gff for LP04475.complete
Subject Subject Range Query Range Percent Splice Strand
CG8031-RA 1..888 76..963 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:12:19 Download gff for LP04475.complete
Subject Subject Range Query Range Percent Splice Strand
CG8031-RA 1..888 76..963 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:18:32 Download gff for LP04475.complete
Subject Subject Range Query Range Percent Splice Strand
CG8031-RA 1..888 76..963 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:27 Download gff for LP04475.complete
Subject Subject Range Query Range Percent Splice Strand
CG8031-RA 1..888 76..963 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:16:27 Download gff for LP04475.complete
Subject Subject Range Query Range Percent Splice Strand
CG8031-RA 1..1263 1..1263 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:52:56 Download gff for LP04475.complete
Subject Subject Range Query Range Percent Splice Strand
CG8031-RA 34..1296 1..1263 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:12:19 Download gff for LP04475.complete
Subject Subject Range Query Range Percent Splice Strand
CG8031-RA 56..1318 1..1263 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:18:32 Download gff for LP04475.complete
Subject Subject Range Query Range Percent Splice Strand
CG8031-RA 1..1263 1..1263 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:27 Download gff for LP04475.complete
Subject Subject Range Query Range Percent Splice Strand
CG8031-RA 56..1318 1..1263 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:17:06 Download gff for LP04475.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13008384..13009146 501..1263 100 <- Minus
3R 13009204..13009315 389..500 100 <- Minus
3R 13009382..13009494 276..388 100 <- Minus
3R 13009559..13009627 207..275 100 <- Minus
3R 13009689..13009770 125..206 100 <- Minus
3R 13011132..13011255 1..124 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:17:06 Download gff for LP04475.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13008384..13009146 501..1263 100 <- Minus
3R 13009204..13009315 389..500 100 <- Minus
3R 13009382..13009494 276..388 100 <- Minus
3R 13009559..13009627 207..275 100 <- Minus
3R 13009689..13009770 125..206 100 <- Minus
3R 13011132..13011255 1..124 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:17:06 Download gff for LP04475.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13008384..13009146 501..1263 100 <- Minus
3R 13009204..13009315 389..500 100 <- Minus
3R 13009382..13009494 276..388 100 <- Minus
3R 13009559..13009627 207..275 100 <- Minus
3R 13009689..13009770 125..206 100 <- Minus
3R 13011132..13011255 1..124 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:12:19 Download gff for LP04475.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8834106..8834868 501..1263 100 <- Minus
arm_3R 8834926..8835037 389..500 100 <- Minus
arm_3R 8835104..8835216 276..388 100 <- Minus
arm_3R 8835281..8835349 207..275 100 <- Minus
arm_3R 8835411..8835492 125..206 100 <- Minus
arm_3R 8836854..8836977 1..124 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:52:45 Download gff for LP04475.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12750035..12750146 389..500 100 <- Minus
3R 12750213..12750325 276..388 100 <- Minus
3R 12750390..12750458 207..275 100 <- Minus
3R 12750520..12750601 125..206 100 <- Minus
3R 12751963..12752086 1..124 100   Minus
3R 12749215..12749977 501..1263 100 <- Minus

LP04475.pep Sequence

Translation from 75 to 962

> LP04475.pep
MSARRATHAGSWYTDSGAELSRQLDRWLGAADLSHGPARAIIAPHAGYTY
CGACAAFAYRQVSPVVVKRIFILGPSHHVRLRGCALSVAKKYRTPLYDLK
IDAQINSELEKTGKFSWMDMKTDEDEHSIEMHLPYIAKVMEDYKDQFTIV
PILVGSLNPEQEAQYGSLLSSYLMDPTNLFVISSDFCHWGHRFSYTYYDS
SCGAIHKSIEKLDKQGMDIIESLNPHSFTEYLRKYNNTICGRHPIGVMLG
AVKALQDQGYDKMSFKFLKYAQSSQCQDIEDSSVSYASGSLVFEM*

LP04475.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18089-PA 295 GF18089-PA 1..295 1..295 1524 94.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17083-PA 295 GG17083-PA 1..295 1..295 1550 96.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19198-PA 295 GH19198-PA 1..294 1..294 1437 87.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8031-PA 295 CG8031-PA 1..295 1..295 1565 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24231-PA 295 GI24231-PA 1..294 1..294 1441 87.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23150-PA 269 GL23150-PA 1..269 1..295 1313 83.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20778-PA 295 GA20778-PA 1..295 1..295 1505 92.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25966-PA 295 GM25966-PA 1..295 1..295 1531 94.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20526-PA 295 GD20526-PA 1..295 1..295 1530 94.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10804-PA 295 GJ10804-PA 1..294 1..294 1457 89.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10855-PA 295 GK10855-PA 1..295 1..295 1493 91.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24472-PA 295 GE24472-PA 1..295 1..295 1553 96.6 Plus

LP04475.hyp Sequence

Translation from 75 to 962

> LP04475.hyp
MSARRATHAGSWYTDSGAELSRQLDRWLGAADLSHGPARAIIAPHAGYTY
CGACAAFAYRQVSPVVVKRIFILGPSHHVRLRGCALSVAKKYRTPLYDLK
IDAQINSELEKTGKFSWMDMKTDEDEHSIEMHLPYIAKVMEDYKDQFTIV
PILVGSLNPEQEAQYGSLLSSYLMDPTNLFVISSDFCHWGHRFSYTYYDS
SCGAIHKSIEKLDKQGMDIIESLNPHSFTEYLRKYNNTICGRHPIGVMLG
AVKALQDQGYDKMSFKFLKYAQSSQCQDIEDSSVSYASGSLVFEM*

LP04475.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8031-PA 295 CG8031-PA 1..295 1..295 1565 100 Plus