Clone LP04559 Report

Search the DGRC for LP04559

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:45
Well:59
Vector:pOT2
Associated Gene/TranscriptGs2-RB
Protein status:LP04559.pep: gold
Sequenced Size:1968

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1743 2003-01-01 Sim4 clustering to Release 3
Gs2 2008-04-29 Release 5.5 accounting
Gs2 2008-08-15 Release 5.9 accounting
Gs2 2008-12-18 5.12 accounting

Clone Sequence Records

LP04559.complete Sequence

1968 bp (1968 high quality bases) assembled on 2005-08-02

GenBank Submission: BT023772

> LP04559.complete
CCCACTGTATCAGCTCCAAGATCGAAACTCCCAATTGGAATTAGAGCAAA
GGGCTCCCTCCAAACAAAAAAAAAAAAATAAAATAAAAAGAGAAAACAAC
AAGAGAAAACAACAAGATAACATTCTACGCAAGTGTTAGGTGTCAAAGTT
CGCGTCTGGAATTACTTTCATTCACCGTTCGGGAAATCATTAAAATCACA
CAATAAGATGCATTCCGCGATCCTGGAGGACTCGCCCAACGCGCGCATCA
ACAAGACGATCCTCGATCGCTATCTTTCACTGCCGCTGCAGGAGAACATC
GTTCAGGCCACCTACGTGTGGATCGATGGCACCGGCGAGGATTTGCGCTG
CAAGGATCGCACCCTCGACTTCATTCCCCAGAGTCCCAAGGAGCTACCCG
TTTGGAACTACGATGGAAGCTCGTGCTACCAGGCCGAGGGATCCAACTCG
GACACCTACCTGTATCCGGTGGCCATCTACAAGGACCCGTTCCGGCGCGG
CAACAACATCCTGGTGATGTGCGACACCTACAAGTTCGACGGCACCCCCA
CGGACACCAACAAGCGCAAGACCTGCCTGGAGGTGGCCAACAAGTGCGCC
GCAGAGGAGCCCTGGTTCGGTATTGAGCAGGAGTACACCTTCCTCGACTT
TGATGGCCATCCATTGGGCTGGCCCAAGAACGGTTTCCCCGGACCCCAGG
GACCCTACTATTGCGGCGTTGGTGCCAACAAGGTCTACGCCCGCGACATT
GTGGATGCCCACTATCGCGCCTGTCTGTACGCCGGCATCAAGGTGTCCGG
CACCAATGCCGAGGTGATGCCCGCCCAGTGGGAGTTCCAGGTGGGACCCT
GCGAGGGCATCTCCATTGGTGATGATCTCTGGATGGCCCGTTTCCTCTTG
CATCGCATCTCCGAGGAGTTTGGCATTGTGTCCACTCTGGATCCCAAGCC
GATGCCTGGCGATTGGAACGGTGCTGGTGCCCACACCAATGTGTCGACGA
AGGCAATGCGCGAAGATGGCGGCATTCGGGACATTGAGAAGGCGGTGGCC
AAGCTGTCCAAGTGCCACGAGAGGCACATTCGCGCCTACGATCCCAAGCA
GGGACAGGACAATGCCCGTCGTCTGACCGGAAAGCACGAGACGAGCTCCA
TCAACGATTTCAGTGCCGGCGTGGCCAATCGCGGATGCAGCATACGCATT
CCTCGCGGCGTCAATGATGATGGCAAGGGCTATTTCGAGGATCGCCGCCC
CAGCTCCAACTGCGATCCCTACTCCGTGGTGGAGGCCATCTTGCGCACCA
TCTGCCTGGACGAATAGGACGGGATGGGATATGCCTATCTCCCGAATTGT
TGTTATCGATTTATAGCTTGTTGTTAAACCACCTTTTGATCCACTGATCC
AATGACCCACGAACAACCCGATCAACTGAACACCGAACGCGAAGTTATTT
GCATAACGTAGGCTTAGTTTTTACCTAACGTATTTCCCATAAACCAGAAC
TAGAAACCTAAGGCAGCCCCCTCCTCTTGCTGATATTTTCAAAGTTTTTT
TTTTCTTTTTTTTGTAGCTGCTGTTACTTAGGTTTTAGTATGAGTTTTTT
TTTTTTGTTTGTTGACCAATCAAATATATAGTAATGTGGTCAGCGTAATG
ACGATGAAATGAAGAGGAGCAAGAACCCAAAAAAGACATCCCCACGAAGA
AGAAGAAAAAAAAAAGATAACATAAAGCTCTAGTATCAAACAATTCCTTG
AGACCCCGCAAAAAAAAGAAAACCCAGCCCCCTACTTGTTAATGATATTA
AATAATTAACTTTAATCCTAAACTACATACATATACTCTCTAGTTAAGTA
AATGCACTAAAAAATAAAAAAAAATACACAATACAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

LP04559.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
Gs2-RB 1910 Gs2-RB 21..1906 1..1887 9395 99.9 Plus
Gs2-RC 2010 Gs2-RC 240..1907 219..1887 8305 99.9 Plus
Gs2.f 1720 Gs2.f 82..1720 219..1858 8160 99.9 Plus
Gs2.f 1720 Gs2.f 1..69 150..218 345 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11320424..11321379 925..1884 4620 99.5 Plus
chrX 22417052 chrX 11319713..11320056 391..734 1675 99.1 Plus
chrX 22417052 chrX 11314032..11314247 1..219 1015 98.6 Plus
chrX 22417052 chrX 11320165..11320358 731..924 970 100 Plus
chrX 22417052 chrX 11315470..11315642 219..391 865 100 Plus
chr2L 23010047 chr2L 133010..133244 605..839 380 77.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:49:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11429239..11430200 925..1887 4765 99.9 Plus
X 23542271 X 11428528..11428871 391..734 1720 100 Plus
X 23542271 X 11422855..11423073 1..219 1095 100 Plus
X 23542271 X 11428980..11429173 731..924 970 100 Plus
X 23542271 X 11424282..11424454 219..391 865 100 Plus
2L 23513712 2L 132973..133207 605..839 380 77.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11437337..11438298 925..1887 4775 99.8 Plus
X 23527363 X 11436626..11436969 391..734 1720 100 Plus
X 23527363 X 11430953..11431171 1..219 1095 100 Plus
X 23527363 X 11437078..11437271 731..924 970 100 Plus
X 23527363 X 11432380..11432552 219..391 865 100 Plus
2L 23513712 2L 132973..133130 605..762 250 77.2 Plus
2L 23513712 2L 133137..133207 769..839 190 84.5 Plus
Blast to na_te.dros performed on 2019-03-16 02:49:59 has no hits.

LP04559.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:50:44 Download gff for LP04559.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11319714..11320054 392..732 99 -> Plus
chrX 11320167..11320358 733..924 100 -> Plus
chrX 11320424..11321353 925..1858 99   Plus
chrX 11315470..11315642 219..391 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:35:45 Download gff for LP04559.complete
Subject Subject Range Query Range Percent Splice Strand
Gs2-RB 1..1110 208..1317 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:07:37 Download gff for LP04559.complete
Subject Subject Range Query Range Percent Splice Strand
Gs2-RB 1..1110 208..1317 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:40:07 Download gff for LP04559.complete
Subject Subject Range Query Range Percent Splice Strand
Gs2-RB 1..1110 208..1317 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:13:58 Download gff for LP04559.complete
Subject Subject Range Query Range Percent Splice Strand
Gs2-RB 1..1110 208..1317 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:22:56 Download gff for LP04559.complete
Subject Subject Range Query Range Percent Splice Strand
Gs2-RB 1..1110 208..1317 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:41:38 Download gff for LP04559.complete
Subject Subject Range Query Range Percent Splice Strand
Gs2-RB 1..1857 1..1858 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:07:37 Download gff for LP04559.complete
Subject Subject Range Query Range Percent Splice Strand
Gs2-RB 1..1857 1..1858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:40:07 Download gff for LP04559.complete
Subject Subject Range Query Range Percent Splice Strand
Gs2-RB 24..1880 1..1858 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:13:58 Download gff for LP04559.complete
Subject Subject Range Query Range Percent Splice Strand
Gs2-RB 1..1857 1..1858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:22:56 Download gff for LP04559.complete
Subject Subject Range Query Range Percent Splice Strand
Gs2-RB 24..1880 1..1858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:50:44 Download gff for LP04559.complete
Subject Subject Range Query Range Percent Splice Strand
X 11422855..11423072 1..218 100 -> Plus
X 11424282..11424454 219..391 100 -> Plus
X 11428529..11428869 392..732 100 -> Plus
X 11428982..11429173 733..924 100 -> Plus
X 11429239..11430171 925..1858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:50:44 Download gff for LP04559.complete
Subject Subject Range Query Range Percent Splice Strand
X 11422855..11423072 1..218 100 -> Plus
X 11424282..11424454 219..391 100 -> Plus
X 11428529..11428869 392..732 100 -> Plus
X 11428982..11429173 733..924 100 -> Plus
X 11429239..11430171 925..1858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:50:44 Download gff for LP04559.complete
Subject Subject Range Query Range Percent Splice Strand
X 11422855..11423072 1..218 100 -> Plus
X 11424282..11424454 219..391 100 -> Plus
X 11428529..11428869 392..732 100 -> Plus
X 11428982..11429173 733..924 100 -> Plus
X 11429239..11430171 925..1858 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:40:07 Download gff for LP04559.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11316888..11317105 1..218 100 -> Plus
arm_X 11318315..11318487 219..391 100 -> Plus
arm_X 11322562..11322902 392..732 100 -> Plus
arm_X 11323015..11323206 733..924 100 -> Plus
arm_X 11323272..11324204 925..1858 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:15:44 Download gff for LP04559.complete
Subject Subject Range Query Range Percent Splice Strand
X 11430953..11431170 1..218 100 -> Plus
X 11432380..11432552 219..391 100 -> Plus
X 11436627..11436967 392..732 100 -> Plus
X 11437080..11437271 733..924 100 -> Plus
X 11437337..11438269 925..1858 99   Plus

LP04559.pep Sequence

Translation from 207 to 1316

> LP04559.pep
MHSAILEDSPNARINKTILDRYLSLPLQENIVQATYVWIDGTGEDLRCKD
RTLDFIPQSPKELPVWNYDGSSCYQAEGSNSDTYLYPVAIYKDPFRRGNN
ILVMCDTYKFDGTPTDTNKRKTCLEVANKCAAEEPWFGIEQEYTFLDFDG
HPLGWPKNGFPGPQGPYYCGVGANKVYARDIVDAHYRACLYAGIKVSGTN
AEVMPAQWEFQVGPCEGISIGDDLWMARFLLHRISEEFGIVSTLDPKPMP
GDWNGAGAHTNVSTKAMREDGGIRDIEKAVAKLSKCHERHIRAYDPKQGQ
DNARRLTGKHETSSINDFSAGVANRGCSIRIPRGVNDDGKGYFEDRRPSS
NCDPYSVVEAILRTICLDE*

LP04559.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22546-PA 299 GF22546-PA 1..298 1..298 1567 96.3 Plus
Dana\GF14864-PA 400 GF14864-PA 32..400 2..369 1327 64.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18416-PA 369 GG18416-PA 1..369 1..369 1964 98.4 Plus
Dere\GG24698-PA 399 GG24698-PA 32..399 2..369 1312 64.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12401-PA 369 GH12401-PA 1..369 1..369 1910 94.3 Plus
Dgri\GH10061-PA 400 GH10061-PA 32..400 2..369 1335 64.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
Gs2-PB 369 CG1743-PB 1..369 1..369 2021 100 Plus
Gs2-PD 373 CG1743-PD 1..373 1..369 2006 98.9 Plus
Gs2-PF 369 CG1743-PF 1..369 1..369 2004 99.2 Plus
Gs2-PE 369 CG1743-PE 1..369 1..369 2004 99.2 Plus
Gs2-PC 369 CG1743-PC 1..369 1..369 2004 99.2 Plus
Gs2-PA 266 CG1743-PA 1..266 104..369 1468 100 Plus
Gs1-PD 399 CG2718-PD 33..399 3..369 1303 64.9 Plus
Gs1-PB 399 CG2718-PB 33..399 3..369 1303 64.9 Plus
Gs1-PC 399 CG2718-PC 33..399 3..369 1303 64.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15717-PA 369 GI15717-PA 1..369 1..369 1908 94.3 Plus
Dmoj\GI16461-PA 400 GI16461-PA 32..400 2..369 1324 65 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14860-PA 369 GL14860-PA 1..369 1..369 1938 97 Plus
Dper\GL13945-PA 400 GL13945-PA 33..400 3..369 1329 65.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14508-PA 369 GA14508-PA 1..369 1..369 1938 97 Plus
Dpse\GA15446-PA 400 GA15446-PA 33..400 3..369 1329 65.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13079-PA 369 GM13079-PA 1..369 1..369 1993 100 Plus
Dsec\GM16716-PA 399 GM16716-PA 32..399 2..369 1311 64.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17021-PA 310 GD17021-PA 3..310 62..369 1665 99.7 Plus
Dsim\GD23002-PA 399 GD23002-PA 32..399 2..369 1315 64.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15245-PA 369 GJ15245-PA 1..369 1..369 1911 95.1 Plus
Dvir\GJ16218-PA 400 GJ16218-PA 33..400 3..369 1339 64.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16230-PA 369 GK16230-PA 1..369 1..369 1934 96.5 Plus
Dwil\GK24485-PA 367 GK24485-PA 1..367 1..369 1648 81.8 Plus
Dwil\GK24614-PA 367 GK24614-PA 1..367 1..369 1555 77.2 Plus
Dwil\GK24607-PA 397 GK24607-PA 30..397 3..369 1319 64.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15935-PA 369 GE15935-PA 1..369 1..369 1977 99.2 Plus
Dyak\GE16593-PA 399 GE16593-PA 32..399 2..369 1309 64.8 Plus

LP04559.hyp Sequence

Translation from 207 to 1316

> LP04559.hyp
MHSAILEDSPNARINKTILDRYLSLPLQENIVQATYVWIDGTGEDLRCKD
RTLDFIPQSPKELPVWNYDGSSCYQAEGSNSDTYLYPVAIYKDPFRRGNN
ILVMCDTYKFDGTPTDTNKRKTCLEVANKCAAEEPWFGIEQEYTFLDFDG
HPLGWPKNGFPGPQGPYYCGVGANKVYARDIVDAHYRACLYAGIKVSGTN
AEVMPAQWEFQVGPCEGISIGDDLWMARFLLHRISEEFGIVSTLDPKPMP
GDWNGAGAHTNVSTKAMREDGGIRDIEKAVAKLSKCHERHIRAYDPKQGQ
DNARRLTGKHETSSINDFSAGVANRGCSIRIPRGVNDDGKGYFEDRRPSS
NCDPYSVVEAILRTICLDE*

LP04559.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
Gs2-PB 369 CG1743-PB 1..369 1..369 2021 100 Plus
Gs2-PD 373 CG1743-PD 1..373 1..369 2006 98.9 Plus
Gs2-PF 369 CG1743-PF 1..369 1..369 2004 99.2 Plus
Gs2-PE 369 CG1743-PE 1..369 1..369 2004 99.2 Plus
Gs2-PC 369 CG1743-PC 1..369 1..369 2004 99.2 Plus