Clone LP04564 Report

Search the DGRC for LP04564

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:45
Well:64
Vector:pOT2
Associated Gene/TranscriptCG31694-RA
Protein status:LP04564.pep: gold
Preliminary Size:1770
Sequenced Size:2477

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3098 2002-01-01 Sim4 clustering to Release 2
CG31694 2002-05-18 Blastp of sequenced clone
CG31694 2003-01-01 Sim4 clustering to Release 3
CG31694 2008-04-29 Release 5.5 accounting
CG31694 2008-08-15 Release 5.9 accounting
CG31694 2008-12-18 5.12 accounting

Clone Sequence Records

LP04564.complete Sequence

2477 bp (2477 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119016

> LP04564.complete
GAGTGTCTGCCAGCGCGGAGAAAAGTGAACGCATTGCAATTAAACATGAA
ATTTGCTGCAACGTCGACGGGAGTACGACATTTTTGTATTATCAACGCCA
AGCAGCAGAGCCATCAGAATCAGCAGACTATATATAAGATACGGCCGCAA
AAATCGCGATCGGAGTTGAACAATTGCAAACGGCAAAGACAGTCGTGTAG
AATTGCCAAAAATTGGAAGCACCAAAGTTTTTGCATAGGTGCGTCCTGAT
CGGCAACGTTTCGGGTTAGAAAGACAAAGATTAAAAAATTGACAGCTCGG
CTCAAGAACGCAATTTAATTTCCTAACCTAGAGCATCAAAATCAATAAAT
CGGAACCAACACGTGCGTTTCAGTAGTTGCCGCCAAAGCAACGAAAGTGT
AGACATTTTCGCCGTTGTGTAGACTTCGACGCCTGTTCTCCACCTTTTGA
GGACCCAGAACAGGAAAAGGACACTCGGCTACAAAGCATCTGTTTTTTTT
GTGTTTCGTACCTTGTGTTTGAAACAGTAGGCTAAACAATAGAAACCAAA
ACGTCGTCGTCGAGTTCAAACAGCAAAATACCTGAACGACGCAAAAACAA
CAGCAACATGCCGCGACGCAACAAGAAATCAGCAGCAGGCAGAGGCCGCA
CCAATGACTCCAATTCTGAGGACGAGTCCTTTGACAATGTGAGCGTTTAC
TCTCATATGTCCGAAGTCGCATCCTCGGAGGCCACCGACGAGCTGGCCAA
TGAGCGTTTCGAGGAGAAGTTCGAGAAGGCCCTGGAACAGGCCACCGAGA
AGTCGGCCCAGACACGTGTGCAGGCTCTGCAAGCGATTTGCGAACTGCTC
ATGCACCGCTACATGCCGGACTTCGTGGAGGACCGCAAGATGACCCTGAT
GGATTTCGTGGAGAAGAGCATCCGTCGAGGCAAGGGCCAGGAGCAGGTGT
GGGGCGCACGACTCGCGCCCCTGCTGGTGCTCCAAATGGGCGGGGATGAA
GGCATATCCAAGGCGATGAATCAATTCCTGTTGAACACCGTTCAGGACAA
GTCCGTGGGCTTCGATGCCCGTGCCAAGTGCTGCACAGCTGTGGGATTGT
TGAGCTTCCTGGGCTGCGAGGATGTTGGGGAGTTGGTACACCTGATGCAG
AGCTTCGAGGCCATCTTCGCAGGCAGTTATTTGCGTGGCGATGACAAGAC
ACCGGTATCCGTCACCGCCGAAGCTGGGACTTTCCATGCGGAGGCCTTGA
ACGCCTGGGGGCTTCTACTAACACTTATACCTTCGGGGGATTTTGTTTCG
TTGATGACCACTGGCCAAAACATGTTTCCATCTATTAAGAAGTTCTTGGG
TCTCTTGCAATCTACACATTTGGACGTCCGCATGGCCGCTGGCGAGACCA
TTGCTTTAATTCTGGAGTCGGGACGTGCTCACGAAGAGGATTTCCTAGAA
GATGACATCGCTGAGTTATCGGAGGCCGTCAAGCAGCTGGCCACGGATTC
GCATAAGTACCGCGCCAAGCGCGATCGCAAGGCCCAGCGTGCCACCTTCC
GTGATGTGCTGCGATACCTGGAGGAGGACATTTCCCCAGAGATTAGCATT
CGTTTCGGTACCGAGTCGCTGACACTAGATTCCTGGTCCATCCATCATCA
GTATTCGGCCATGTGCACTGTCATGGGTCCCGGGATGACCTCGCAGCTGC
AGGAGAACGAGTTCATCCGTGACATCTTCCAGCTGGGACCACGACCCACG
AACACAGGCATCAATGGAAACGCCAAGGTCAAGCCGACCAAGCTGGAGCG
GCACCTTGTGAATGCTGCTGCATTCAAGGCACGCTCCATAACACGTGGAA
AGAATCGTGACAAGCGATCGGCCGTCGTCACTTAAACCTGTGCTTCACCC
ACCAACCGTTCCCATCCACAGACACCCAAACCAACCATCTCAAACCCCGT
TAGCCAACTCTGGACTTACTAGTTGAATTGTTTCTAATTTTAGCTTGAAC
CAGGCAAAGCGTCGCCAAAGCTGAAGAACTAAGTCTAAATTTAGGATAAT
TCAGTGTAATCTACAAAATTTCTCTAGTTTATTAACCACATGTTGGAGCC
ATTGTTTGAATATTATGAAATATTTATTGCGTGCACGCACAGTGGTTGTT
TATCAGTAAGTGCATGGCTGGCTCCAGCTTGGATCTTATTCTTTGTGAAT
TTAAATTAACACTGCGATTGTTACGACTGGCATTTACGCTTTGCGATTTG
GGTTAACCTCTTTTGTTGTTGATCTTTTTAAATTACAAGCGTAGGAAAAC
ATAGTCTGCTTTAATGCTGCGAAAAAGTTATTCATAACTTGACATGGCTT
TTAATACGCATAATAAGCGGCTCTATGAATACATATATTTTGTAGTAAAT
AAGTGTAAAATAAAGTTTAGGCTTAAACGAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA

LP04564.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31694-RA 2828 CG31694-RA 315..2747 1..2433 12165 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2870660..2871346 1329..643 3405 99.7 Minus
chr2L 23010047 chr2L 2873285..2873929 645..1 3210 99.8 Minus
chr2L 23010047 chr2L 2868283..2868911 2429..1801 3100 99.5 Minus
chr2L 23010047 chr2L 2870344..2870588 1574..1330 1165 98.4 Minus
chr2L 23010047 chr2L 2868979..2869208 1801..1572 1135 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:49:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2871004..2871690 1329..643 3435 100 Minus
2L 23513712 2L 2873635..2874279 645..1 3225 100 Minus
2L 23513712 2L 2868623..2869255 2433..1801 3165 100 Minus
2L 23513712 2L 2870688..2870932 1574..1330 1225 100 Minus
2L 23513712 2L 2869323..2869552 1801..1572 1150 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2871004..2871690 1329..643 3435 100 Minus
2L 23513712 2L 2873635..2874279 645..1 3225 100 Minus
2L 23513712 2L 2868623..2869255 2433..1801 3165 100 Minus
2L 23513712 2L 2870688..2870932 1574..1330 1225 100 Minus
2L 23513712 2L 2869323..2869552 1801..1572 1150 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:22:28 has no hits.

LP04564.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:23:35 Download gff for LP04564.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2868283..2868910 1802..2429 99 <- Minus
chr2L 2868979..2869206 1574..1801 99 <- Minus
chr2L 2870345..2870588 1330..1573 98 <- Minus
chr2L 2870660..2871344 645..1329 99 <- Minus
chr2L 2873286..2873929 1..644 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:35:46 Download gff for LP04564.complete
Subject Subject Range Query Range Percent Splice Strand
CG31694-RA 1..1278 608..1885 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:39:26 Download gff for LP04564.complete
Subject Subject Range Query Range Percent Splice Strand
CG31694-RA 1..1278 608..1885 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:48:29 Download gff for LP04564.complete
Subject Subject Range Query Range Percent Splice Strand
CG31694-RA 1..1278 608..1885 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:16:27 Download gff for LP04564.complete
Subject Subject Range Query Range Percent Splice Strand
CG31694-RA 1..1278 608..1885 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:15:40 Download gff for LP04564.complete
Subject Subject Range Query Range Percent Splice Strand
CG31694-RA 1..1278 608..1885 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:44:15 Download gff for LP04564.complete
Subject Subject Range Query Range Percent Splice Strand
CG31694-RA 240..2668 1..2429 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:39:26 Download gff for LP04564.complete
Subject Subject Range Query Range Percent Splice Strand
CG31694-RA 240..2668 1..2429 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:48:29 Download gff for LP04564.complete
Subject Subject Range Query Range Percent Splice Strand
CG31694-RA 211..2639 1..2429 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:16:27 Download gff for LP04564.complete
Subject Subject Range Query Range Percent Splice Strand
CG31694-RA 240..2668 1..2429 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:15:40 Download gff for LP04564.complete
Subject Subject Range Query Range Percent Splice Strand
CG31694-RA 211..2639 1..2429 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:23:35 Download gff for LP04564.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2868627..2869254 1802..2429 100 <- Minus
2L 2869323..2869550 1574..1801 100 <- Minus
2L 2870689..2870932 1330..1573 100 <- Minus
2L 2871004..2871688 645..1329 100 <- Minus
2L 2873636..2874279 1..644 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:23:35 Download gff for LP04564.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2868627..2869254 1802..2429 100 <- Minus
2L 2869323..2869550 1574..1801 100 <- Minus
2L 2870689..2870932 1330..1573 100 <- Minus
2L 2871004..2871688 645..1329 100 <- Minus
2L 2873636..2874279 1..644 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:23:35 Download gff for LP04564.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2868627..2869254 1802..2429 100 <- Minus
2L 2869323..2869550 1574..1801 100 <- Minus
2L 2870689..2870932 1330..1573 100 <- Minus
2L 2871004..2871688 645..1329 100 <- Minus
2L 2873636..2874279 1..644 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:48:29 Download gff for LP04564.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2868627..2869254 1802..2429 100 <- Minus
arm_2L 2869323..2869550 1574..1801 100 <- Minus
arm_2L 2870689..2870932 1330..1573 100 <- Minus
arm_2L 2871004..2871688 645..1329 100 <- Minus
arm_2L 2873636..2874279 1..644 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:52:19 Download gff for LP04564.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2868627..2869254 1802..2429 100 <- Minus
2L 2869323..2869550 1574..1801 100 <- Minus
2L 2870689..2870932 1330..1573 100 <- Minus
2L 2871004..2871688 645..1329 100 <- Minus
2L 2873636..2874279 1..644 100   Minus

LP04564.pep Sequence

Translation from 607 to 1884

> LP04564.pep
MPRRNKKSAAGRGRTNDSNSEDESFDNVSVYSHMSEVASSEATDELANER
FEEKFEKALEQATEKSAQTRVQALQAICELLMHRYMPDFVEDRKMTLMDF
VEKSIRRGKGQEQVWGARLAPLLVLQMGGDEGISKAMNQFLLNTVQDKSV
GFDARAKCCTAVGLLSFLGCEDVGELVHLMQSFEAIFAGSYLRGDDKTPV
SVTAEAGTFHAEALNAWGLLLTLIPSGDFVSLMTTGQNMFPSIKKFLGLL
QSTHLDVRMAAGETIALILESGRAHEEDFLEDDIAELSEAVKQLATDSHK
YRAKRDRKAQRATFRDVLRYLEEDISPEISIRFGTESLTLDSWSIHHQYS
AMCTVMGPGMTSQLQENEFIRDIFQLGPRPTNTGINGNAKVKPTKLERHL
VNAAAFKARSITRGKNRDKRSAVVT*

LP04564.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14911-PA 494 GF14911-PA 1..329 1..332 1615 90.4 Plus
Dana\GF14911-PA 494 GF14911-PA 391..494 322..425 510 89.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24479-PA 425 GG24479-PA 1..425 1..425 2257 98.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11052-PA 430 GH11052-PA 1..430 1..425 1884 80.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG31694-PA 425 CG31694-PA 1..425 1..425 2160 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17570-PA 424 GI17570-PA 1..423 1..424 1981 87.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26710-PA 427 GL26710-PA 1..427 1..425 2080 92 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16401-PA 427 GA16401-PA 1..427 1..425 2080 92 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18186-PA 425 GM18186-PA 1..425 1..425 2265 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22793-PA 426 GD22793-PA 1..426 1..425 2188 96.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17912-PA 424 GJ17912-PA 1..423 1..424 2064 89.6 Plus
Dvir\GJ15385-PA 105 GJ15385-PA 1..104 321..424 527 91.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24748-PA 431 GK24748-PA 23..431 17..425 2027 91.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14985-PA 425 GE14985-PA 1..425 1..425 2239 97.6 Plus

LP04564.hyp Sequence

Translation from 607 to 1884

> LP04564.hyp
MPRRNKKSAAGRGRTNDSNSEDESFDNVSVYSHMSEVASSEATDELANER
FEEKFEKALEQATEKSAQTRVQALQAICELLMHRYMPDFVEDRKMTLMDF
VEKSIRRGKGQEQVWGARLAPLLVLQMGGDEGISKAMNQFLLNTVQDKSV
GFDARAKCCTAVGLLSFLGCEDVGELVHLMQSFEAIFAGSYLRGDDKTPV
SVTAEAGTFHAEALNAWGLLLTLIPSGDFVSLMTTGQNMFPSIKKFLGLL
QSTHLDVRMAAGETIALILESGRAHEEDFLEDDIAELSEAVKQLATDSHK
YRAKRDRKAQRATFRDVLRYLEEDISPEISIRFGTESLTLDSWSIHHQYS
AMCTVMGPGMTSQLQENEFIRDIFQLGPRPTNTGINGNAKVKPTKLERHL
VNAAAFKARSITRGKNRDKRSAVVT*

LP04564.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31694-PA 425 CG31694-PA 1..425 1..425 2160 100 Plus