Clone LP04613 Report

Search the DGRC for LP04613

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:46
Well:13
Vector:pOT2
Associated Gene/TranscriptCG10877-RA
Protein status:LP04613.pep: gold
Preliminary Size:1424
Sequenced Size:1629

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10877 2002-01-01 Sim4 clustering to Release 2
CG10877 2002-05-18 Blastp of sequenced clone
CG10877 2003-01-01 Sim4 clustering to Release 3
CG10877 2008-04-29 Release 5.5 accounting
CG10877 2008-08-15 Release 5.9 accounting
CG10877 2008-12-18 5.12 accounting

Clone Sequence Records

LP04613.complete Sequence

1629 bp (1629 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119018

> LP04613.complete
CGCGGATCAAGTCGGCCCGCAAAACTTTCCACACACAACATACACATGTG
TACTGGCGACAGATTAGTTGACCCACAAGTAGCAACAAAAAAAGAACCAT
GTTGTCACAGAATTTACGCCTCGTCCGGGGATTGCTTAATTACGGAGTTT
GCCGCCCGAGCTTGAGAAACTTCGCAGCCGTTGGCGATAAAAACAACGCA
GCCGATAATGCTAATGCCAGCGATGTGGACGAACGCCACCCGCTGCATGG
TATCCGGATTTTGGACCTATCGCGCATCATCGCCGGCCCCTATTGCACCA
TGGTTCTGGCGGATCTCGGCGCGGAAGTTATCAAGGTGGAGCGTCCACAC
TTTGGCGATGAGGCGCGTAAGTGGGGACCACCCTTTCTAAAGAACAGCAA
CGATGCCGCCTACTTCCTGGCTCCCAATCGCAATAAACGGAGCATCTGCA
TCGATATCAAGCGCGGCACGCAACTCCTTCATCGCCTGGCCGAGATTAGC
GACGTGCTGGTGGAGAATTATGTGCCCGGCACCTTGGAGCGTTACGGCCT
GGGCTACGAGCAGTTGCGTAAGGTGAATCCCAAACTGATCTATTGCTCAA
TGACGGGTTATGGCTCTGTGGGACCGTATGCCAAGCGACCCGGCTACGAT
GTGATTGCCTCCTCGGTTGGAGGACTGATGCACATCACCGGCGAGCGGGA
TGGACCGCCCAGCAAGGTGGGCGTGGCTGTGACGGATATGTCCACAGGAC
TGTACGCCCATGGAGCAATTTTGGCAGCCCTCTATCAAAGGACCCGCACG
CAACGTGGCCAGAAGATCGAAGTCGACCTGTTGTCCACCTGCTGCTCCCT
GCTGCTCAACGTGGGTAGCAACTACCTGAATTCCGGGGTCGAAGCAGGAA
GGATGGGCACCGCACACTCCAGCATCGTTCCGTATCAGAGCTTCAAGACG
AAGGACGGCTATCTCACCCTGGGCACTGGCAGTGATGTTCAGTTTGTGGA
CCTGTGTCGCCGCCTAAAAGTGGAACATTTGGCGCAGAATCCCAAATTCA
AGACCAACAAGGATCGTGTGACCAATCGAGTGGAGCTGCTGGGAATCCTA
GAGCAAATGCTATCCGAGGACACCTCGCGCAACTGGATGAAACTTTTCGA
GGGCGCCTCCTTTCCCGTGGGACCTGTTAACTCCATTCCCGAGGTCTTCG
AGGACGAGCATATAAAAGCCATTGGCCTGGTGAAAAGCCTGCGGCATCCC
AAGGACGAAACAGTCAAGGTGGTTGGTCCTCCTGTGACCTTCAGCGAAGC
GCGAAACGATGCCCGGACAGCTCCTCCGATTCTTGGCCAGCACACGGATG
AAGTGCTGGGCGAACTACTGGGTTACGGGCCGGATGAGCTGGCCAAGCTG
AAGAAGGATAACATTATTCAGTAACCCGATTGGGATTTCGGACAGTCTAA
AGTGATTTGAATTCCTAAATCCTCTGATATATACTGCTTTATATGGTCTT
TTGCGACCAATATTTTAGTGATAATCATGCATTTACCATTAGACCGACTA
AAGGCCTTAAAAAATAAATGACAATTTCTCATAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LP04613.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10877-RA 1582 CG10877-RA 1..1582 1..1582 7910 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16386400..16387981 1582..1 7910 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:49:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20562481..20564067 1587..1 7935 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20303312..20304898 1587..1 7935 100 Minus
Blast to na_te.dros performed 2019-03-16 11:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy2 6841 gypsy2 GYPSY2 6841bp 5319..5435 112..229 120 59.5 Plus

LP04613.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:35:49 Download gff for LP04613.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16386400..16387981 1..1582 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:35:47 Download gff for LP04613.complete
Subject Subject Range Query Range Percent Splice Strand
CG10877-RA 1..1326 99..1424 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:43:08 Download gff for LP04613.complete
Subject Subject Range Query Range Percent Splice Strand
CG10877-RA 1..1326 99..1424 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:03:33 Download gff for LP04613.complete
Subject Subject Range Query Range Percent Splice Strand
CG10877-RA 1..1326 99..1424 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:35:17 Download gff for LP04613.complete
Subject Subject Range Query Range Percent Splice Strand
CG10877-RA 1..1326 99..1424 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:37 Download gff for LP04613.complete
Subject Subject Range Query Range Percent Splice Strand
CG10877-RA 1..1326 99..1424 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:17:35 Download gff for LP04613.complete
Subject Subject Range Query Range Percent Splice Strand
CG10877-RA 1..1582 1..1582 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:43:08 Download gff for LP04613.complete
Subject Subject Range Query Range Percent Splice Strand
CG10877-RA 1..1582 1..1582 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:03:33 Download gff for LP04613.complete
Subject Subject Range Query Range Percent Splice Strand
CG10877-RA 1..1582 1..1582 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:35:18 Download gff for LP04613.complete
Subject Subject Range Query Range Percent Splice Strand
CG10877-RA 1..1582 1..1582 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:37 Download gff for LP04613.complete
Subject Subject Range Query Range Percent Splice Strand
CG10877-RA 1..1582 1..1582 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:49 Download gff for LP04613.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20562486..20564067 1..1582 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:49 Download gff for LP04613.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20562486..20564067 1..1582 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:49 Download gff for LP04613.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20562486..20564067 1..1582 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:03:33 Download gff for LP04613.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16388208..16389789 1..1582 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:07:39 Download gff for LP04613.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20303317..20304898 1..1582 100   Minus

LP04613.pep Sequence

Translation from 98 to 1423

> LP04613.pep
MLSQNLRLVRGLLNYGVCRPSLRNFAAVGDKNNAADNANASDVDERHPLH
GIRILDLSRIIAGPYCTMVLADLGAEVIKVERPHFGDEARKWGPPFLKNS
NDAAYFLAPNRNKRSICIDIKRGTQLLHRLAEISDVLVENYVPGTLERYG
LGYEQLRKVNPKLIYCSMTGYGSVGPYAKRPGYDVIASSVGGLMHITGER
DGPPSKVGVAVTDMSTGLYAHGAILAALYQRTRTQRGQKIEVDLLSTCCS
LLLNVGSNYLNSGVEAGRMGTAHSSIVPYQSFKTKDGYLTLGTGSDVQFV
DLCRRLKVEHLAQNPKFKTNKDRVTNRVELLGILEQMLSEDTSRNWMKLF
EGASFPVGPVNSIPEVFEDEHIKAIGLVKSLRHPKDETVKVVGPPVTFSE
ARNDARTAPPILGQHTDEVLGELLGYGPDELAKLKKDNIIQ*

LP04613.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18334-PA 450 GF18334-PA 4..450 1..441 1845 76.5 Plus
Dana\GF14549-PA 373 GF14549-PA 2..308 48..374 289 27.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15379-PA 439 GG15379-PA 1..439 1..441 2245 95.9 Plus
Dere\GG21551-PA 374 GG21551-PA 2..307 48..373 277 27.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14164-PA 444 GH14164-PA 15..444 18..441 1767 74.4 Plus
Dgri\GH10846-PA 373 GH10846-PA 2..304 48..371 285 26.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10877-PA 441 CG10877-PA 1..441 1..441 2294 100 Plus
Amacr-PB 373 CG9319-PB 2..305 48..371 297 27.8 Plus
Amacr-PA 373 CG9319-PA 2..305 48..371 297 27.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10535-PA 443 GI10535-PA 3..443 1..441 1747 73.6 Plus
Dmoj\GI19587-PA 375 GI19587-PA 2..307 48..371 291 28.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13930-PA 447 GL13930-PA 26..447 17..441 1816 79.3 Plus
Dper\GL19592-PA 373 GL19592-PA 2..365 48..440 306 26.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10613-PA 440 GA10613-PA 1..440 1..441 1856 78.4 Plus
Dpse\GA21697-PA 373 GA21697-PA 2..365 48..440 313 26.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23184-PA 441 GM23184-PA 1..441 1..441 2309 98 Plus
Dsec\GM23310-PA 374 GM23310-PA 2..305 48..371 294 28.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20057-PA 441 GD20057-PA 1..441 1..441 2329 99.1 Plus
Dsim\GD21682-PA 374 GD21682-PA 2..305 48..371 294 28 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24187-PA 442 GJ24187-PA 18..442 21..441 1770 77.2 Plus
Dvir\GJ17422-PA 375 GJ17422-PA 2..307 48..371 285 27.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22719-PA 433 GK22719-PA 1..433 1..441 1742 74.6 Plus
Dwil\GK15230-PA 377 GK15230-PA 2..307 48..371 304 27.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25064-PA 439 GE25064-PA 1..439 1..441 2251 96.8 Plus
Dyak\GE13545-PA 374 GE13545-PA 2..305 48..371 277 26.6 Plus

LP04613.hyp Sequence

Translation from 98 to 1423

> LP04613.hyp
MLSQNLRLVRGLLNYGVCRPSLRNFAAVGDKNNAADNANASDVDERHPLH
GIRILDLSRIIAGPYCTMVLADLGAEVIKVERPHFGDEARKWGPPFLKNS
NDAAYFLAPNRNKRSICIDIKRGTQLLHRLAEISDVLVENYVPGTLERYG
LGYEQLRKVNPKLIYCSMTGYGSVGPYAKRPGYDVIASSVGGLMHITGER
DGPPSKVGVAVTDMSTGLYAHGAILAALYQRTRTQRGQKIEVDLLSTCCS
LLLNVGSNYLNSGVEAGRMGTAHSSIVPYQSFKTKDGYLTLGTGSDVQFV
DLCRRLKVEHLAQNPKFKTNKDRVTNRVELLGILEQMLSEDTSRNWMKLF
EGASFPVGPVNSIPEVFEDEHIKAIGLVKSLRHPKDETVKVVGPPVTFSE
ARNDARTAPPILGQHTDEVLGELLGYGPDELAKLKKDNIIQ*

LP04613.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10877-PA 441 CG10877-PA 1..441 1..441 2294 100 Plus
CG9319-PB 373 CG9319-PB 2..305 48..371 297 27.8 Plus
CG9319-PA 373 CG9319-PA 2..305 48..371 297 27.8 Plus