BDGP Sequence Production Resources |
Search the DGRC for LP04622
Library: | LP |
Tissue Source: | Drosophila melanogaster larval-early pupal |
Created by: | Ling Hong |
Date Registered: | 1998-06-11 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 46 |
Well: | 22 |
Vector: | pOT2 |
Associated Gene/Transcript | Skp2-RB |
Protein status: | LP04622.pep: wuzgold |
Sequenced Size: | 1939 |
Gene | Date | Evidence |
---|---|---|
CG9772-RB | 2009-06-22 | Replacement based on scoring |
1939 bp assembled on 2009-12-14
GenBank Submission: BT120039.1
> LP04622.complete CTGCTCGTACGTTTGCCAAGCAACTTCGTAGAGGTTCATTTGGGAATCCT TCTCGCCTTCCTTAGTACAGCATTATGGCGGTCTTGTTTTTATCGTCACA TGGCGCCTCCAGGCATTGGCGGTTGCGGAGGCCGAGTCGCTGGGCGTACA ACAGGATGGCGATATTCAGCAGCACAACGACGGTGGATACCACGACCAGA AAGCGCTCGACTAATAAGAACCACGTCTCTGTTGTGGGCGCTCTAGTTTC CACTACGAAGTCATCGCACTACGAGCACCCTTCCTCGCCCTCGGCACTAA CTTTTGAGGCCCTAGAAGAGATGGGAATCGGAATGCTTGATTCCGAAGAA AGCAGCTCCTCAGCCCTCTCGGCCATCGCTTTGGCGGTTAGCGCCACCAG CGACGACAACTCAAATGAGACGACCCCGTGCGCCAGTGTGTCGCGCATGG CGCACCAGCTACAGCACACGCAACGGCTAAGTCTGGGCTCTACGGGGGAC ATCACACTGGATAGCCCAGCTGTGGAGGATTCACTGTCGATGTCCCGTCA ATCGGCCGAGAAGCTGCAGATTCTGGCGCAGGCTAAGCGCTCGTCGTTGG GTTCTGAAGGTAGCGGCAATTCAAACTCGCCCAGCAAACGTTTGCGCAAC CCCCTGGCTGCAGTCACCTGTAACAACCAGATTGATGGGACTGCTTCGCT CAATTTTCAGCCATCAACCAGCAGGTTGGCGCAAGTTCGCCAGGCAAAAA AGCCCTCGACAACAAATATTACAACCCGAATAGTGGCAGCGGACAGTTTC TTTGTGTTTCGCACCCCGGCCATGAGTGCCCACATCAACAGCGGCATAAA CTACTTTGAAAGACTTTCAGACGAAATACTACTTGACATCTTTAAGTGGC TCCCGAAGAAGACGCTGCTGCGCATGGCTACCGTTTGTCGACGCTTTAAC CGCTGCTCTCGCGATGAGACTTTGTGGACAAGGCTAGATTTGGGTTTGCG GACAATTAGACCAGGTGCCCTCGAGCAAATTGTACGGCGGGGAGTCCTTG TAATACGTCTGGCCCAGACTAGTATCCAGGAGCCCGCATTTGCACCATAT ACAGAAGTGTTTAGGACCCGATTACAATATCTTGACCTGAGTATGGCTTC CATCACCCGAAGCTCACTGCTGACACTATTGTCCCACTGCCGCCAGCTAA AGAAAATAAGCTTAGAGAATATTGAGCTCGATGATGACATCTGTGCAGAG ATCGCAAAGAATGAAGCTTTGGAGGCGGTCAATCTGACTATGGCTAGTGG CCTGACGTCCAACAGTGTTCGCCTGATGATGGAGTCACTTACCAGCCTAA GCAGCTTAAACATATCGTGGACTGACCTAAGTGCGGATGCTGTTACGGCG TTGGTTACCCACATTTCCCCCAACTTAATTCGGCTCAATATCGCTGGCTG CCGCCGCGTTTTGTTTGACTCGCATGTTGCAACCCTGCAAAAACGGTGTC CTCAGTTGTTGGAGCTTGATCTATCTGATTGCAATAGTCTAACACCAACA GTCATTACTGCAATTATGAAGTTCAAGATGCTGGAATATTTGTCCGTCTC CCGATGCTATCTTATTCCAGCAACCAAATTTATTGAACTTAAGAGTATGC CCTCGCTAACCTATTTAGACATATTTGGGATGCTGTCGGACACTGCAATG GAAGTCCTTGAGAAACAACTGCCAAAAATGGGTATAAACAAATTCATTCA CAGTTCGGTATCCCGCCCGACTGTTGGCACGCGACGCACCTCCATTTGGG GTCTGCGCACGCGCGACTAAGTCTCGACTCTGCTGCTTCCGTTACCATTT GAATTTGTTTTGCTGCGTAAGCCACCCGTAACGCAGTTATTTTATTCTCA ATTCAACAACATAAATAATCACATTAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9772-RB | 1942 | CG9772-RB | 1..1925 | 1..1925 | 9625 | 100 | Plus |
CG9772-RA | 2075 | CG9772-RA | 189..1920 | 194..1925 | 8660 | 100 | Plus |
CG9772.b | 1897 | CG9772.b | 134..1574 | 194..1634 | 7205 | 100 | Plus |
CG9772.b | 1897 | CG9772.b | 1589..1880 | 1634..1925 | 1460 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 162189..163065 | 1073..197 | 4385 | 100 | Minus |
chr3R | 27901430 | chr3R | 161729..162128 | 1473..1074 | 2000 | 100 | Minus |
chr3R | 27901430 | chr3R | 161158..161449 | 1925..1634 | 1460 | 100 | Minus |
chr3R | 27901430 | chr3R | 165087..165285 | 199..1 | 995 | 100 | Minus |
chr3R | 27901430 | chr3R | 161506..161665 | 1633..1474 | 800 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 4336469..4337345 | 1073..197 | 4385 | 100 | Minus |
3R | 32079331 | 3R | 4336009..4336408 | 1473..1074 | 2000 | 100 | Minus |
3R | 32079331 | 3R | 4335438..4335729 | 1925..1634 | 1460 | 100 | Minus |
3R | 32079331 | 3R | 4339367..4339565 | 199..1 | 995 | 100 | Minus |
3R | 32079331 | 3R | 4335786..4335945 | 1633..1474 | 800 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 4077300..4078176 | 1073..197 | 4385 | 100 | Minus |
3R | 31820162 | 3R | 4076840..4077239 | 1473..1074 | 2000 | 100 | Minus |
3R | 31820162 | 3R | 4076269..4076560 | 1925..1634 | 1460 | 100 | Minus |
3R | 31820162 | 3R | 4080198..4080396 | 199..1 | 995 | 100 | Minus |
3R | 31820162 | 3R | 4076617..4076776 | 1633..1474 | 800 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 161506..161665 | 1474..1633 | 100 | <- | Minus |
chr3R | 161158..161449 | 1634..1925 | 100 | <- | Minus |
chr3R | 161729..162128 | 1074..1473 | 100 | <- | Minus |
chr3R | 162189..163062 | 200..1073 | 100 | <- | Minus |
chr3R | 165087..165285 | 1..199 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9772-RB | 1..1746 | 75..1820 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9772-RB | 1..1746 | 75..1820 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Skp2-RB | 1..1746 | 75..1820 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Skp2-RA | 54..1680 | 194..1820 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9772-RB | 1..1925 | 1..1925 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9772-RB | 1..1925 | 1..1925 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Skp2-RB | 1..1925 | 1..1925 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Skp2-RA | 122..1853 | 194..1925 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4335438..4335729 | 1634..1925 | 100 | <- | Minus |
3R | 4335786..4335945 | 1474..1633 | 100 | <- | Minus |
3R | 4336009..4336408 | 1074..1473 | 100 | <- | Minus |
3R | 4336469..4337342 | 200..1073 | 100 | <- | Minus |
3R | 4339367..4339565 | 1..199 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4335438..4335729 | 1634..1925 | 100 | <- | Minus |
3R | 4335786..4335945 | 1474..1633 | 100 | <- | Minus |
3R | 4336009..4336408 | 1074..1473 | 100 | <- | Minus |
3R | 4336469..4337342 | 200..1073 | 100 | <- | Minus |
3R | 4339367..4339565 | 1..199 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4335438..4335729 | 1634..1925 | 100 | <- | Minus |
3R | 4335786..4335945 | 1474..1633 | 100 | <- | Minus |
3R | 4336009..4336408 | 1074..1473 | 100 | <- | Minus |
3R | 4336469..4337342 | 200..1073 | 100 | <- | Minus |
3R | 4339367..4339565 | 1..199 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 161160..161451 | 1634..1925 | 100 | <- | Minus |
arm_3R | 161508..161667 | 1474..1633 | 100 | <- | Minus |
arm_3R | 161731..162130 | 1074..1473 | 100 | <- | Minus |
arm_3R | 162191..163064 | 200..1073 | 100 | <- | Minus |
arm_3R | 165089..165287 | 1..199 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4076269..4076560 | 1634..1925 | 100 | <- | Minus |
3R | 4076617..4076776 | 1474..1633 | 100 | <- | Minus |
3R | 4076840..4077239 | 1074..1473 | 100 | <- | Minus |
3R | 4077300..4078173 | 200..1073 | 100 | <- | Minus |
3R | 4080198..4080396 | 1..199 | 100 | Minus |
Translation from 74 to 1819
> LP04622.pep MAVLFLSSHGASRHWRLRRPSRWAYNRMAIFSSTTTVDTTTRKRSTNKNH VSVVGALVSTTKSSHYEHPSSPSALTFEALEEMGIGMLDSEESSSSALSA IALAVSATSDDNSNETTPCASVSRMAHQLQHTQRLSLGSTGDITLDSPAV EDSLSMSRQSAEKLQILAQAKRSSLGSEGSGNSNSPSKRLRNPLAAVTCN NQIDGTASLNFQPSTSRLAQVRQAKKPSTTNITTRIVAADSFFVFRTPAM SAHINSGINYFERLSDEILLDIFKWLPKKTLLRMATVCRRFNRCSRDETL WTRLDLGLRTIRPGALEQIVRRGVLVIRLAQTSIQEPAFAPYTEVFRTRL QYLDLSMASITRSSLLTLLSHCRQLKKISLENIELDDDICAEIAKNEALE AVNLTMASGLTSNSVRLMMESLTSLSSLNISWTDLSADAVTALVTHISPN LIRLNIAGCRRVLFDSHVATLQKRCPQLLELDLSDCNSLTPTVITAIMKF KMLEYLSVSRCYLIPATKFIELKSMPSLTYLDIFGMLSDTAMEVLEKQLP KMGINKFIHSSVSRPTVGTRRTSIWGLRTRD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16815-PA | 561 | GF16815-PA | 19..561 | 41..581 | 2151 | 79.1 | Plus |
Dana\GF15907-PA | 383 | GF15907-PA | 33..357 | 73..391 | 1011 | 64 | Plus |
Dana\GF11789-PA | 637 | GF11789-PA | 226..458 | 261..511 | 188 | 26.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11654-PA | 561 | GG11654-PA | 19..561 | 41..581 | 2451 | 91.7 | Plus |
Dere\GG22638-PA | 641 | GG22638-PA | 230..462 | 261..511 | 195 | 26.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18735-PA | 579 | GH18735-PA | 20..579 | 42..581 | 1780 | 68.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Skp2-PE | 559 | CG9772-PE | 19..559 | 41..581 | 2693 | 100 | Plus |
Skp2-PA | 559 | CG9772-PA | 19..559 | 41..581 | 2693 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22887-PA | 589 | GI22887-PA | 20..589 | 42..581 | 1786 | 66.9 | Plus |
Dmoj\GI21037-PA | 677 | GI21037-PA | 266..498 | 261..511 | 193 | 25.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12326-PA | 533 | GL12326-PA | 19..515 | 41..541 | 1805 | 74.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22024-PB | 548 | GA22024-PB | 1..548 | 30..581 | 2099 | 76.1 | Plus |
Dpse\GA22024-PA | 555 | GA22024-PA | 19..555 | 41..581 | 2072 | 76.7 | Plus |
Dpse\GA22024-PC | 341 | GA22024-PC | 19..308 | 41..334 | 962 | 71.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10708-PA | 557 | GM10708-PA | 19..557 | 41..581 | 2542 | 94.8 | Plus |
Dsec\GM20416-PA | 653 | GM20416-PA | 242..474 | 261..511 | 197 | 26.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19685-PA | 557 | GD19685-PA | 19..557 | 41..581 | 2553 | 95.2 | Plus |
Dsim\GD25892-PA | 615 | GD25892-PA | 204..436 | 261..511 | 193 | 26.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14183-PA | 584 | GJ14183-PA | 20..584 | 42..581 | 1844 | 69.9 | Plus |
Dvir\GJ21964-PA | 660 | GJ21964-PA | 249..481 | 261..511 | 185 | 24.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11443-PA | 590 | GK11443-PA | 19..590 | 41..581 | 1893 | 67.3 | Plus |
Dwil\GK21630-PA | 634 | GK21630-PA | 223..455 | 261..511 | 184 | 26 | Plus |
Dwil\GK11217-PA | 764 | GK11217-PA | 393..678 | 260..552 | 160 | 26 | Plus |
Translation from 74 to 1819
> LP04622.hyp MAVLFLSSHGASRHWRLRRPSRWAYNRMAIFSSTTTVDTTTRKRSTNKNH VSVVGALVSTTKSSHYEHPSSPSALTFEALEEMGIGMLDSEESSSSALSA IALAVSATSDDNSNETTPCASVSRMAHQLQHTQRLSLGSTGDITLDSPAV EDSLSMSRQSAEKLQILAQAKRSSLGSEGSGNSNSPSKRLRNPLAAVTCN NQIDGTASLNFQPSTSRLAQVRQAKKPSTTNITTRIVAADSFFVFRTPAM SAHINSGINYFERLSDEILLDIFKWLPKKTLLRMATVCRRFNRCSRDETL WTRLDLGLRTIRPGALEQIVRRGVLVIRLAQTSIQEPAFAPYTEVFRTRL QYLDLSMASITRSSLLTLLSHCRQLKKISLENIELDDDICAEIAKNEALE AVNLTMASGLTSNSVRLMMESLTSLSSLNISWTDLSADAVTALVTHISPN LIRLNIAGCRRVLFDSHVATLQKRCPQLLELDLSDCNSLTPTVITAIMKF KMLEYLSVSRCYLIPATKFIELKSMPSLTYLDIFGMLSDTAMEVLEKQLP KMGINKFIHSSVSRPTVGTRRTSIWGLRTRD*