Clone LP04690 Report

Search the DGRC for LP04690

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:46
Well:90
Vector:pOT2
Associated Gene/Transcriptl(3)mbn-RC
Protein status:LP04690.pep: wuzgold
Preliminary Size:2296
Sequenced Size:2087

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12755 2002-01-01 Sim4 clustering to Release 2
CG12755 2002-05-18 Blastp of sequenced clone
CG12755 2003-01-01 Sim4 clustering to Release 3
l(3)mbn 2008-04-29 Release 5.5 accounting
l(3)mbn 2008-08-15 Release 5.9 accounting
l(3)mbn 2008-12-18 5.12 accounting

Clone Sequence Records

LP04690.complete Sequence

2087 bp (2087 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119019

> LP04690.complete
AGGGCGTGAAAATAAAATAAAATTGGTGACCGATTTAAATAAATAATAAA
TTCCCAAAATGAGCCTAAAATTGATGGCGTTTGTCTGTGCTCTGCTGCTC
CTGTGCACCTTGACCCATGTCCTGTCGGCCGCGACCACAGTGCGTCCCTA
CAAGTTCGGCTTCACCATCGACGAGCAGCAGCATCGGGCAGAGAAGAGAG
ATGAACGCGGCATTATCATGGGCGAGTTTGGGTTCATCACCGCCGATGGT
ATCTATCACGTGACGGTCTATGCCACCGACGAGGAGGGCAAATTCCGGAT
AATCTCCATGAAGAGCTATCCTTACGCGGGTCCAGTTGGTTCAAAAAGTG
TTCCTGTGACAACGACTCCAAAGGTCCTGCTTCCTGCAGCTCCGGTGGCT
CTGCCCAAGTACAACTTCAACTCGGAGGCCTGTTCCGGTTGTTTCCTAAA
AAAGTCCCCTCCCAAGACGGAAATTCGCACACTTTCACAGCCATTGGCTC
CAGTTCAACCAGGTAAGCCCGATGGCTCTTCAGACATCGGCCTGAATGTG
CAGTTACCCTTCCGGGAATCCATTGCACAGACTGTGGCAAGTCGTCTTGG
TTTGCTCCAAGATACACTGCAAACCTCCAACACAAACACGAACGCACCAA
ACACTAAAACAATCGAACTTGGTCTCAACATAGCAATGAGCACATACTAC
ACAACAAAGAATGCTGTAACCGGACATGTGAGCACGCAGACCTCCAATTC
GCAAACTCCGAGTGCCAACACAAAGATCGACTACAATGTGGGCGTGGTCG
AGAAGGCTTCACCGCCGGTTTATCGGCCATTGAACATCCGGTTGAACGAG
GACGTTATGAGACAAGCTATTACATATGGAAACACAATACCTGGCCATGT
GCCCTTGCCCAATCAGCCACTTGTTGAAACCTCATTGCTTCCAGCGAGTC
AACACAACATCCGAATGCGGGCCTTAATGCAAAGGTTCCACTTGCCAGTA
ACATTCAATCCGTAGCACAACATCCGAATGCGGGCCTTAATGCAAAGGTT
CCACTTGCCAGTAACATTCAATCCGTAGCACAACATCCGAATGCGGGCCT
TAAAAACATTAATAGATCGGGAGTTTCTTCTGCGAAAACATTGGCCAATA
CGAAGACAAGACCACCACACACATTTAACCCACACCAAACACCTCTTTTG
AGTTCAGCCACCGCCCCGGGAATTTCTGGAGTGACAGCGAATACACCAAC
CGGAAATGTACCCTCAAATGGTGGAGGCATCGCGGCGGGTAAAGCGCCTG
GTAATCCACAAGCTGGCGGATCTGGAGGTATTATCGGTGCAGGAGCTCCA
GGCGGAAGAAAAGTCTCGGCTGGTGGAATTGGTTCTGGAAGTGCAATTGG
AGGAGTCTCTGGAGGAAGCAAAGCCTCAGGAAACGGCGGTGCAATTGGAT
CTGGAAGTGCAATTGGAGGAGGGGCTACTGGAAGCAAAGCTTCAGGATTT
GGATTCGGAAGTAATATTGGAGGAGGTGTTTCAGGCAGCAAACCTTCAGG
GTTTGGATCCGAAAGTAAAATTGGAGGACCTGATTCAGGCAGCAAAGCTT
TAGGATTTGGATCCGGAAGTAAAATTGGAGGAGGTATTACTGGCACCAAA
GCTTCAGGATTTGGCGGAGAAATCGGTTCTGGCCGTGGAAGTGCCTCAAG
TGCAACGGGTGATCTGTACAAATTCAAGTACATACTGGACTACAATGGAC
ACGAGGAGACCGGCGGTCGCAATGGTGACAAGCAGGGTAGCTACTTTGCA
ATCGGCGAGGATGCAGTGCAGCGGACCATTGAGTATATTGCGAACGAGTT
TGGATTCCAGCCCCACGTCAGCTGGCGGAAATTGGACGCCAAGGAGGCGC
TGCCCGAGGAGAATTCACTGAAGCACTACGAGTTTAAATGGTTTAATCAG
GAATAGTAATGATACGGTGATTTTCCGGTGGATTATTCCAAGACTAGAGT
AGGCACCTCTTTTCCCCATGCTGTACATAACAATTTTTGGTTAATTTCGA
ATAAATACAACGTTAAAAGAAAAAAAAAAAAAAAAAA

LP04690.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)mbn-RC 2117 l(3)mbn-RC 1..2072 1..2072 10360 100 Plus
l(3)mbn-RB 2357 l(3)mbn-RB 1193..2312 953..2072 5600 100 Plus
l(3)mbn.c 2555 l(3)mbn.c 1391..2510 953..2072 5600 100 Plus
l(3)mbn-RB 2357 l(3)mbn-RB 177..1128 1..952 4760 100 Plus
l(3)mbn.c 2555 l(3)mbn.c 375..1326 1..952 4760 100 Plus
l(3)mbn-RB 2357 l(3)mbn-RB 1153..1280 976..1103 640 100 Plus
l(3)mbn.c 2555 l(3)mbn.c 1351..1478 976..1103 640 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6116492..6117296 2069..1265 4025 100 Minus
chr3L 24539361 chr3L 6117792..6118551 1103..345 3495 97.6 Minus
chr3L 24539361 chr3L 6117629..6117879 1203..953 1255 100 Minus
chr3L 24539361 chr3L 6118912..6119057 344..199 730 100 Minus
chr3L 24539361 chr3L 6120915..6121027 204..92 550 99.1 Minus
chr3L 24539361 chr3L 6121087..6121177 91..1 455 100 Minus
chr3L 24539361 chr3L 6117729..6117816 1040..953 440 100 Minus
chr3L 24539361 chr3L 6116897..6117062 1610..1445 380 81.9 Minus
chr3L 24539361 chr3L 6116951..6117116 1664..1499 380 81.9 Minus
chr3L 24539361 chr3L 6117855..6117919 1103..1039 325 100 Minus
chr3L 24539361 chr3L 6117365..6117427 1264..1202 315 100 Minus
chr3L 24539361 chr3L 6116897..6117008 1556..1445 260 82.1 Minus
chr3L 24539361 chr3L 6117005..6117116 1664..1553 260 82.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:49:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6123931..6124738 2072..1265 4040 100 Minus
3L 28110227 3L 6125234..6125993 1103..345 3510 97.8 Minus
3L 28110227 3L 6125071..6125321 1203..953 1255 100 Minus
3L 28110227 3L 6126354..6126499 344..199 730 100 Minus
3L 28110227 3L 6128357..6128469 204..92 550 99.1 Minus
3L 28110227 3L 6128529..6128619 91..1 455 100 Minus
3L 28110227 3L 6125171..6125258 1040..953 440 100 Minus
3L 28110227 3L 6124339..6124504 1610..1445 380 81.9 Minus
3L 28110227 3L 6124393..6124558 1664..1499 380 81.9 Minus
3L 28110227 3L 6125297..6125361 1103..1039 325 100 Minus
3L 28110227 3L 6124807..6124869 1264..1202 315 100 Minus
3L 28110227 3L 6124339..6124450 1556..1445 260 82.1 Minus
3L 28110227 3L 6124447..6124558 1664..1553 260 82.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6117031..6117838 2072..1265 4040 100 Minus
3L 28103327 3L 6118486..6119093 952..345 3040 100 Minus
3L 28103327 3L 6118171..6118421 1203..953 1255 100 Minus
3L 28103327 3L 6119454..6119599 344..199 730 100 Minus
3L 28103327 3L 6118334..6118461 1103..976 640 100 Minus
3L 28103327 3L 6121457..6121569 204..92 550 99.1 Minus
3L 28103327 3L 6121629..6121719 91..1 455 100 Minus
3L 28103327 3L 6117907..6117969 1264..1202 315 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:57:00 has no hits.

LP04690.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:58:01 Download gff for LP04690.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6121087..6121177 1..91 100   Minus
chr3L 6120919..6121027 92..200 100 <- Minus
chr3L 6116492..6117296 1265..2069 100 <- Minus
chr3L 6117365..6117427 1202..1264 100 <- Minus
chr3L 6117631..6117879 953..1201 100 <- Minus
chr3L 6117944..6118551 345..952 99 <- Minus
chr3L 6118912..6119055 201..344 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:35:52 Download gff for LP04690.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RB 1..894 59..952 100 -> Plus
l(3)mbn-RB 959..1962 953..1956 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:43:09 Download gff for LP04690.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RB 1..894 59..952 100 -> Plus
l(3)mbn-RB 959..1962 953..1956 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:18:13 Download gff for LP04690.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RB 1..894 59..952 100 -> Plus
l(3)mbn-RB 959..1962 953..1956 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:35:19 Download gff for LP04690.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RB 1..894 59..952 100 -> Plus
l(3)mbn-RB 959..1962 953..1956 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:46:11 Download gff for LP04690.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RB 959..1962 953..1956 100   Plus
l(3)mbn-RB 1..894 59..952 100 -> Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:17:36 Download gff for LP04690.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RC 1..2069 1..2069 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:43:09 Download gff for LP04690.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RC 1..2069 1..2069 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:18:13 Download gff for LP04690.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RB 189..1140 1..952 100 -> Plus
l(3)mbn-RB 1205..2321 953..2069 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:35:19 Download gff for LP04690.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RC 1..2069 1..2069 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:46:11 Download gff for LP04690.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RB 189..1140 1..952 100 -> Plus
l(3)mbn-RB 1205..2321 953..2069 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:58:01 Download gff for LP04690.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6125073..6125321 953..1201 100 <- Minus
3L 6123934..6124738 1265..2069 100 <- Minus
3L 6124807..6124869 1202..1264 100 <- Minus
3L 6125386..6125993 345..952 100 <- Minus
3L 6126354..6126497 201..344 100 <- Minus
3L 6128361..6128469 92..200 100 <- Minus
3L 6128529..6128619 1..91 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:58:01 Download gff for LP04690.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6125073..6125321 953..1201 100 <- Minus
3L 6123934..6124738 1265..2069 100 <- Minus
3L 6124807..6124869 1202..1264 100 <- Minus
3L 6125386..6125993 345..952 100 <- Minus
3L 6126354..6126497 201..344 100 <- Minus
3L 6128361..6128469 92..200 100 <- Minus
3L 6128529..6128619 1..91 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:58:01 Download gff for LP04690.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6125073..6125321 953..1201 100 <- Minus
3L 6123934..6124738 1265..2069 100 <- Minus
3L 6124807..6124869 1202..1264 100 <- Minus
3L 6125386..6125993 345..952 100 <- Minus
3L 6126354..6126497 201..344 100 <- Minus
3L 6128361..6128469 92..200 100 <- Minus
3L 6128529..6128619 1..91 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:18:13 Download gff for LP04690.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6117034..6117838 1265..2069 100 <- Minus
arm_3L 6117907..6117969 1202..1264 100 <- Minus
arm_3L 6118173..6118421 953..1201 100 <- Minus
arm_3L 6118486..6119093 345..952 100 <- Minus
arm_3L 6119454..6119597 201..344 100 <- Minus
arm_3L 6121461..6121569 92..200 100 <- Minus
arm_3L 6121629..6121719 1..91 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:07:40 Download gff for LP04690.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6118173..6118421 953..1201 100 <- Minus
3L 6117034..6117838 1265..2069 100 <- Minus
3L 6117907..6117969 1202..1264 100 <- Minus
3L 6118486..6119093 345..952 100 <- Minus
3L 6119454..6119597 201..344 100 <- Minus
3L 6121461..6121569 92..200 100 <- Minus
3L 6121629..6121719 1..91 100   Minus

LP04690.pep Sequence

Translation from 58 to 1014

> LP04690.pep
MSLKLMAFVCALLLLCTLTHVLSAATTVRPYKFGFTIDEQQHRAEKRDER
GIIMGEFGFITADGIYHVTVYATDEEGKFRIISMKSYPYAGPVGSKSVPV
TTTPKVLLPAAPVALPKYNFNSEACSGCFLKKSPPKTEIRTLSQPLAPVQ
PGKPDGSSDIGLNVQLPFRESIAQTVASRLGLLQDTLQTSNTNTNAPNTK
TIELGLNIAMSTYYTTKNAVTGHVSTQTSNSQTPSANTKIDYNVGVVEKA
SPPVYRPLNIRLNEDVMRQAITYGNTIPGHVPLPNQPLVETSLLPASQHN
IRMRALMQRFHLPVTFNP*

LP04690.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10926-PA 566 GF10926-PA 1..305 1..301 782 58.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14087-PA 503 GG14087-PA 1..282 1..283 1135 89 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15656-PA 536 GH15656-PA 15..165 21..153 423 59.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)mbn-PB 653 CG12755-PB 1..315 1..317 1537 95.3 Plus
l(3)mbn-PE 596 CG12755-PE 1..258 1..317 1068 71.3 Plus
l(3)mbn-PD 402 CG12755-PD 1..167 1..167 796 92.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12700-PA 167 GI12700-PA 19..160 20..151 439 61.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15522-PA 595 GL15522-PA 1..361 1..298 814 53.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23854-PA 584 GA23854-PA 1..361 1..298 832 54.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13870-PA 557 GM13870-PA 1..301 1..301 1389 91 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13154-PA 558 GD13154-PA 1..301 1..301 1419 92.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12685-PA 738 GJ12685-PA 1..149 1..146 458 62 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16925-PA 632 GK16925-PA 1..317 1..273 729 53.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20510-PA 459 GE20510-PA 1..286 1..286 1339 87.8 Plus

LP04690.hyp Sequence

Translation from 58 to 1014

> LP04690.hyp
MSLKLMAFVCALLLLCTLTHVLSAATTVRPYKFGFTIDEQQHRAEKRDER
GIIMGEFGFITADGIYHVTVYATDEEGKFRIISMKSYPYAGPVGSKSVPV
TTTPKVLLPAAPVALPKYNFNSEACSGCFLKKSPPKTEIRTLSQPLAPVQ
PGKPDGSSDIGLNVQLPFRESIAQTVASRLGLLQDTLQTSNTNTNAPNTK
TIELGLNIAMSTYYTTKNAVTGHVSTQTSNSQTPSANTKIDYNVGVVEKA
SPPVYRPLNIRLNEDVMRQAITYGNTIPGHVPLPNQPLVETSLLPASQHN
IRMRALMQRFHLPVTFNP*

LP04690.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)mbn-PB 653 CG12755-PB 1..315 1..317 1537 95.3 Plus
l(3)mbn-PE 596 CG12755-PE 1..258 1..317 1068 71.3 Plus
l(3)mbn-PD 402 CG12755-PD 1..167 1..167 796 92.2 Plus