Clone LP04712 Report

Search the DGRC for LP04712

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:47
Well:12
Vector:pOT2
Associated Gene/TranscriptCG31709-RA
Protein status:LP04712.pep: gold
Sequenced Size:965

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31709 2009-06-08 Manual selection by Joe Carlson

Clone Sequence Records

LP04712.complete Sequence

965 bp assembled on 2009-07-31

GenBank Submission: BT089019.1

> LP04712.complete
TATACAACTAGGGATTTTCCTCAACAACAAGTTTAAATTCGTTAGTCAAC
CAAAATCGTGTAACAATGGGTGCTTGTCGCCCTAGAAAATGTAGTGCAAA
TAACCGAACTATGGCAATTCGTCGCCGTAGAGCTCTAGTTAACTTGCTAT
TTTTGCGCCGTCATTTGATTGGACAGGCACTTGGAATTACGAATCGGGAA
ACTCCAGACCTTAGGGTAAAATCGCGGCGACGCAATCGTAGAAGGAGAAT
GCAATTCAGAGTCCGTACACCAAGTGATAATGCAATGCGCTCAGTAAGGC
ATCATGGACAGAATCCAATCAGCCCAGGATCACGGCTACAACGAAATAAT
CCACTTTGGGGACACGCCGACATTATAACCACAGATAGAGCGTTGGAAGC
TTTAAATGGACTTACTACAGGGAACAGGGAACCAAATGCATTGTCAGTAA
TGGTGCGATATACCAATGGGCGGTATTATTTAAGCTTAGAGCCAAGTGGA
AATCAGCAAAATGAGAACAATATCGTTCAAAATCCCAGTCGGAATGGTCA
GAACCAACAGGTCGAAGACGGCAATGATCGGAATCTTCAACCGGCAGCTC
AGGCAGCTGATGATGATAACAATATGACAAATTCAAATCCGGAGGTTCCA
GATGTCGGAGGCAAATCAGAAGGATCAAGGGAATGCCCATGATTAGAATC
AAGATAATAACGAAGAATATGATACTAACTCACATAGTATCAAGTTAATG
TATAGTTTGGAAAGTTTTCCTTACTACACATATATACAATATTTTCATTA
CCAAAAGAGGTAAACAAAATTTTAAATTCCATTTTCAACGGCAATTAAAT
TCGGGGTCGATTAAACGGTTTACCCCCTGTCAGAGGCCACTCAAAAATTT
GGTTATTGTTTCTGATCTTTTTTCAAGCCGATTATAAATAATAAAAGTAT
AAAAAAAAAAAAAAA

LP04712.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31709-RA 979 CG31709-RA 10..975 1..965 4790 99.8 Plus
gcm-RA 2228 gcm-RA 2048..2166 1..119 595 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9577390..9577861 946..475 2315 99.4 Minus
chr2L 23010047 chr2L 9577923..9578277 474..120 1730 99.2 Minus
chr2L 23010047 chr2L 9578341..9578459 119..1 595 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:49:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9578540..9579031 965..475 2410 99.8 Minus
2L 23513712 2L 9579093..9579447 474..120 1775 100 Minus
2L 23513712 2L 9579511..9579629 119..1 595 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9578540..9579031 965..475 2420 99.7 Minus
2L 23513712 2L 9579093..9579447 474..120 1775 100 Minus
2L 23513712 2L 9579511..9579629 119..1 595 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:42:13 has no hits.

LP04712.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:43:19 Download gff for LP04712.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9577407..9577861 475..929 99 <- Minus
chr2L 9577923..9578277 120..474 99 <- Minus
chr2L 9578341..9578459 1..119 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:12:33 Download gff for LP04712.complete
Subject Subject Range Query Range Percent Splice Strand
CG31709-RA 1..627 66..692 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:53:47 Download gff for LP04712.complete
Subject Subject Range Query Range Percent Splice Strand
CG31709-RA 1..627 66..692 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:04:20 Download gff for LP04712.complete
Subject Subject Range Query Range Percent Splice Strand
CG31709-RA 1..627 66..692 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:17:30 Download gff for LP04712.complete
Subject Subject Range Query Range Percent Splice Strand
CG31709-RA 1..627 66..692 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-31 12:42:32 Download gff for LP04712.complete
Subject Subject Range Query Range Percent Splice Strand
CG31709-RA 10..960 1..950 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:53:47 Download gff for LP04712.complete
Subject Subject Range Query Range Percent Splice Strand
CG31709-RA 10..960 1..950 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:04:20 Download gff for LP04712.complete
Subject Subject Range Query Range Percent Splice Strand
CG31709-RA 10..960 1..950 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:17:30 Download gff for LP04712.complete
Subject Subject Range Query Range Percent Splice Strand
CG31709-RA 10..960 1..950 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:43:19 Download gff for LP04712.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9578555..9579031 475..950 99 <- Minus
2L 9579093..9579447 120..474 100 <- Minus
2L 9579511..9579629 1..119 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:43:19 Download gff for LP04712.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9578555..9579031 475..950 99 <- Minus
2L 9579093..9579447 120..474 100 <- Minus
2L 9579511..9579629 1..119 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:43:19 Download gff for LP04712.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9578555..9579031 475..950 99 <- Minus
2L 9579093..9579447 120..474 100 <- Minus
2L 9579511..9579629 1..119 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:04:20 Download gff for LP04712.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9578555..9579031 475..950 99 <- Minus
arm_2L 9579093..9579447 120..474 100 <- Minus
arm_2L 9579511..9579629 1..119 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:44:34 Download gff for LP04712.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9578555..9579031 475..950 99 <- Minus
2L 9579093..9579447 120..474 100 <- Minus
2L 9579511..9579629 1..119 100   Minus

LP04712.hyp Sequence

Translation from 65 to 691

> LP04712.hyp
MGACRPRKCSANNRTMAIRRRRALVNLLFLRRHLIGQALGITNRETPDLR
VKSRRRNRRRRMQFRVRTPSDNAMRSVRHHGQNPISPGSRLQRNNPLWGH
ADIITTDRALEALNGLTTGNREPNALSVMVRYTNGRYYLSLEPSGNQQNE
NNIVQNPSRNGQNQQVEDGNDRNLQPAAQAADDDNNMTNSNPEVPDVGGK
SEGSRECP*

LP04712.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31709-PB 208 CG31709-PB 1..208 1..208 1095 100 Plus
CG31709-PA 208 CG31709-PA 1..208 1..208 1095 100 Plus

LP04712.pep Sequence

Translation from 65 to 691

> LP04712.pep
MGACRPRKCSANNRTMAIRRRRALVNLLFLRRHLIGQALGITNRETPDLR
VKSRRRNRRRRMQFRVRTPSDNAMRSVRHHGQNPISPGSRLQRNNPLWGH
ADIITTDRALEALNGLTTGNREPNALSVMVRYTNGRYYLSLEPSGNQQNE
NNIVQNPSRNGQNQQVEDGNDRNLQPAAQAADDDNNMTNSNPEVPDVGGK
SEGSRECP*

LP04712.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24020-PA 227 GG24020-PA 1..202 1..197 368 49.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31709-PB 208 CG31709-PB 1..208 1..208 1095 100 Plus
CG31709-PA 208 CG31709-PA 1..208 1..208 1095 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12397-PA 198 GM12397-PA 1..187 1..197 588 71.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22350-PA 196 GD22350-PA 1..184 1..196 545 70.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10468-PA 212 GE10468-PA 1..186 1..197 262 44.3 Plus