LP04712.complete Sequence
965 bp assembled on 2009-07-31
GenBank Submission: BT089019.1
> LP04712.complete
TATACAACTAGGGATTTTCCTCAACAACAAGTTTAAATTCGTTAGTCAAC
CAAAATCGTGTAACAATGGGTGCTTGTCGCCCTAGAAAATGTAGTGCAAA
TAACCGAACTATGGCAATTCGTCGCCGTAGAGCTCTAGTTAACTTGCTAT
TTTTGCGCCGTCATTTGATTGGACAGGCACTTGGAATTACGAATCGGGAA
ACTCCAGACCTTAGGGTAAAATCGCGGCGACGCAATCGTAGAAGGAGAAT
GCAATTCAGAGTCCGTACACCAAGTGATAATGCAATGCGCTCAGTAAGGC
ATCATGGACAGAATCCAATCAGCCCAGGATCACGGCTACAACGAAATAAT
CCACTTTGGGGACACGCCGACATTATAACCACAGATAGAGCGTTGGAAGC
TTTAAATGGACTTACTACAGGGAACAGGGAACCAAATGCATTGTCAGTAA
TGGTGCGATATACCAATGGGCGGTATTATTTAAGCTTAGAGCCAAGTGGA
AATCAGCAAAATGAGAACAATATCGTTCAAAATCCCAGTCGGAATGGTCA
GAACCAACAGGTCGAAGACGGCAATGATCGGAATCTTCAACCGGCAGCTC
AGGCAGCTGATGATGATAACAATATGACAAATTCAAATCCGGAGGTTCCA
GATGTCGGAGGCAAATCAGAAGGATCAAGGGAATGCCCATGATTAGAATC
AAGATAATAACGAAGAATATGATACTAACTCACATAGTATCAAGTTAATG
TATAGTTTGGAAAGTTTTCCTTACTACACATATATACAATATTTTCATTA
CCAAAAGAGGTAAACAAAATTTTAAATTCCATTTTCAACGGCAATTAAAT
TCGGGGTCGATTAAACGGTTTACCCCCTGTCAGAGGCCACTCAAAAATTT
GGTTATTGTTTCTGATCTTTTTTCAAGCCGATTATAAATAATAAAAGTAT
AAAAAAAAAAAAAAA
LP04712.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 16:27:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31709-RA | 979 | CG31709-RA | 10..975 | 1..965 | 4790 | 99.8 | Plus |
gcm-RA | 2228 | gcm-RA | 2048..2166 | 1..119 | 595 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:42:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 9577390..9577861 | 946..475 | 2315 | 99.4 | Minus |
chr2L | 23010047 | chr2L | 9577923..9578277 | 474..120 | 1730 | 99.2 | Minus |
chr2L | 23010047 | chr2L | 9578341..9578459 | 119..1 | 595 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:49:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:42:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9578540..9579031 | 965..475 | 2410 | 99.8 | Minus |
2L | 23513712 | 2L | 9579093..9579447 | 474..120 | 1775 | 100 | Minus |
2L | 23513712 | 2L | 9579511..9579629 | 119..1 | 595 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:22:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9578540..9579031 | 965..475 | 2420 | 99.7 | Minus |
2L | 23513712 | 2L | 9579093..9579447 | 474..120 | 1775 | 100 | Minus |
2L | 23513712 | 2L | 9579511..9579629 | 119..1 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 02:42:13 has no hits.
LP04712.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:43:19 Download gff for
LP04712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 9577407..9577861 | 475..929 | 99 | <- | Minus |
chr2L | 9577923..9578277 | 120..474 | 99 | <- | Minus |
chr2L | 9578341..9578459 | 1..119 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:12:33 Download gff for
LP04712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31709-RA | 1..627 | 66..692 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:53:47 Download gff for
LP04712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31709-RA | 1..627 | 66..692 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:04:20 Download gff for
LP04712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31709-RA | 1..627 | 66..692 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:17:30 Download gff for
LP04712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31709-RA | 1..627 | 66..692 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-31 12:42:32 Download gff for
LP04712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31709-RA | 10..960 | 1..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:53:47 Download gff for
LP04712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31709-RA | 10..960 | 1..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:04:20 Download gff for
LP04712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31709-RA | 10..960 | 1..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:17:30 Download gff for
LP04712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31709-RA | 10..960 | 1..950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:43:19 Download gff for
LP04712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9578555..9579031 | 475..950 | 99 | <- | Minus |
2L | 9579093..9579447 | 120..474 | 100 | <- | Minus |
2L | 9579511..9579629 | 1..119 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:43:19 Download gff for
LP04712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9578555..9579031 | 475..950 | 99 | <- | Minus |
2L | 9579093..9579447 | 120..474 | 100 | <- | Minus |
2L | 9579511..9579629 | 1..119 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:43:19 Download gff for
LP04712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9578555..9579031 | 475..950 | 99 | <- | Minus |
2L | 9579093..9579447 | 120..474 | 100 | <- | Minus |
2L | 9579511..9579629 | 1..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:04:20 Download gff for
LP04712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9578555..9579031 | 475..950 | 99 | <- | Minus |
arm_2L | 9579093..9579447 | 120..474 | 100 | <- | Minus |
arm_2L | 9579511..9579629 | 1..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:44:34 Download gff for
LP04712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9578555..9579031 | 475..950 | 99 | <- | Minus |
2L | 9579093..9579447 | 120..474 | 100 | <- | Minus |
2L | 9579511..9579629 | 1..119 | 100 | | Minus |
LP04712.hyp Sequence
Translation from 65 to 691
> LP04712.hyp
MGACRPRKCSANNRTMAIRRRRALVNLLFLRRHLIGQALGITNRETPDLR
VKSRRRNRRRRMQFRVRTPSDNAMRSVRHHGQNPISPGSRLQRNNPLWGH
ADIITTDRALEALNGLTTGNREPNALSVMVRYTNGRYYLSLEPSGNQQNE
NNIVQNPSRNGQNQQVEDGNDRNLQPAAQAADDDNNMTNSNPEVPDVGGK
SEGSRECP*
LP04712.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:30:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31709-PB | 208 | CG31709-PB | 1..208 | 1..208 | 1095 | 100 | Plus |
CG31709-PA | 208 | CG31709-PA | 1..208 | 1..208 | 1095 | 100 | Plus |
LP04712.pep Sequence
Translation from 65 to 691
> LP04712.pep
MGACRPRKCSANNRTMAIRRRRALVNLLFLRRHLIGQALGITNRETPDLR
VKSRRRNRRRRMQFRVRTPSDNAMRSVRHHGQNPISPGSRLQRNNPLWGH
ADIITTDRALEALNGLTTGNREPNALSVMVRYTNGRYYLSLEPSGNQQNE
NNIVQNPSRNGQNQQVEDGNDRNLQPAAQAADDDNNMTNSNPEVPDVGGK
SEGSRECP*
LP04712.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:25:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG24020-PA | 227 | GG24020-PA | 1..202 | 1..197 | 368 | 49.8 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31709-PB | 208 | CG31709-PB | 1..208 | 1..208 | 1095 | 100 | Plus |
CG31709-PA | 208 | CG31709-PA | 1..208 | 1..208 | 1095 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:25:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM12397-PA | 198 | GM12397-PA | 1..187 | 1..197 | 588 | 71.1 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:25:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD22350-PA | 196 | GD22350-PA | 1..184 | 1..196 | 545 | 70.4 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:25:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE10468-PA | 212 | GE10468-PA | 1..186 | 1..197 | 262 | 44.3 | Plus |