Clone LP04851 Report

Search the DGRC for LP04851

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:48
Well:51
Vector:pOT2
Associated Gene/TranscriptCG5391-RA
Protein status:LP04851.pep: gold
Preliminary Size:737
Sequenced Size:828

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5391 2002-01-01 Sim4 clustering to Release 2
CG5391 2002-05-18 Blastp of sequenced clone
CG5391 2003-01-01 Sim4 clustering to Release 3
CG5391 2008-04-29 Release 5.5 accounting
CG5391 2008-08-15 Release 5.9 accounting
CG5391 2008-12-18 5.12 accounting

Clone Sequence Records

LP04851.complete Sequence

828 bp (828 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119023

> LP04851.complete
ATTAAGCGTACTGACGGGGAATAAAGTCGGACGTCAGCCAAAAATCACAT
AAAGATCCTCCAGCAAGTGTGAACAACCAACAGAGTGCTAAAATTAAATT
CATCTTAATTATATAAAATCAATTTTTGTGTTAAAACTCGTACATTTCCA
ATGGCTTTCAAGTACAATACACAAATGATCCTGCTGAGCTGCGGTTTGGC
TGTGCTCTTGGGCTTCTCAGAAGCCCTACCTCGATACAGTCGAACCAAAG
ACCTGGGAACATCCGCCAGCTTCCCCAGCTTCGCCTATGCACCCAGGCCA
CAGGAACCGATGACCCTCACTGGGAACTACAACCTCATCATGCCCGACTA
CTACGATCACCATCCCGCGGAGTCCATGCAACTGCAAAACTTTGCCAACT
TCTACGATGCCCAAATGAGTCCCGACTCTGATCTCGGAATGGAGGAATCG
CAGTTTTTGAGCCACACTCCAGTGAGGGCACCTCAGCCCTTGACGGCCGA
GGAGAAACGTGCTCGTCAGCAGATTCCCCACGTGGACATCAACCGGGAGA
AGAAGGCCCTGCTCAAGCTAAAGAAGGGCAGCACCAAGCCCAGAGGAGCC
GATCACCAGGAGTGGGACCAGTTCGACTACGATTTGTACAGCCTGAATCC
CGGCGATAGCAAGAAGTACAACTACGATGCCTAGATGGATTCGGTTCCCT
ACTAAATCGACTGTATATGTTTATGTTTTTGTTTTCCGTTGGTTTAAGCT
CACAAATAAATTATTTATTTATTGTTAACTGCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA

LP04851.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5391.a 1507 CG5391.a 700..1483 1..784 3920 100 Plus
CG5391-RA 934 CG5391-RA 127..910 1..784 3920 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18156689..18157294 782..177 3030 100 Minus
chr3R 27901430 chr3R 18157575..18157751 177..1 885 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:49:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22333086..22333693 784..177 3040 100 Minus
3R 32079331 3R 22333974..22334150 177..1 885 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22073917..22074524 784..177 3040 100 Minus
3R 31820162 3R 22074805..22074981 177..1 885 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:59:19 has no hits.

LP04851.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:00:00 Download gff for LP04851.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18156689..18157293 178..782 100 <- Minus
chr3R 18157575..18157751 1..177 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:36:03 Download gff for LP04851.complete
Subject Subject Range Query Range Percent Splice Strand
CG5391-RA 1..534 151..684 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:02:53 Download gff for LP04851.complete
Subject Subject Range Query Range Percent Splice Strand
CG5391-RA 1..534 151..684 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:04:35 Download gff for LP04851.complete
Subject Subject Range Query Range Percent Splice Strand
CG5391-RA 1..534 151..684 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:53:14 Download gff for LP04851.complete
Subject Subject Range Query Range Percent Splice Strand
CG5391-RA 1..534 151..684 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:12:06 Download gff for LP04851.complete
Subject Subject Range Query Range Percent Splice Strand
CG5391-RA 1..534 151..684 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:21:15 Download gff for LP04851.complete
Subject Subject Range Query Range Percent Splice Strand
CG5391-RA 1..782 1..782 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:02:53 Download gff for LP04851.complete
Subject Subject Range Query Range Percent Splice Strand
CG5391-RA 1..782 1..782 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:35 Download gff for LP04851.complete
Subject Subject Range Query Range Percent Splice Strand
CG5391-RA 1..782 1..782 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:53:15 Download gff for LP04851.complete
Subject Subject Range Query Range Percent Splice Strand
CG5391-RA 1..782 1..782 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:12:06 Download gff for LP04851.complete
Subject Subject Range Query Range Percent Splice Strand
CG5391-RA 1..782 1..782 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:00:00 Download gff for LP04851.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22333088..22333692 178..782 100 <- Minus
3R 22333974..22334150 1..177 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:00:00 Download gff for LP04851.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22333088..22333692 178..782 100 <- Minus
3R 22333974..22334150 1..177 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:00:00 Download gff for LP04851.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22333088..22333692 178..782 100 <- Minus
3R 22333974..22334150 1..177 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:35 Download gff for LP04851.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18158810..18159414 178..782 100 <- Minus
arm_3R 18159696..18159872 1..177 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:25:19 Download gff for LP04851.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22073919..22074523 178..782 100 <- Minus
3R 22074805..22074981 1..177 100   Minus

LP04851.hyp Sequence

Translation from 150 to 683

> LP04851.hyp
MAFKYNTQMILLSCGLAVLLGFSEALPRYSRTKDLGTSASFPSFAYAPRP
QEPMTLTGNYNLIMPDYYDHHPAESMQLQNFANFYDAQMSPDSDLGMEES
QFLSHTPVRAPQPLTAEEKRARQQIPHVDINREKKALLKLKKGSTKPRGA
DHQEWDQFDYDLYSLNPGDSKKYNYDA*

LP04851.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5391-PA 177 CG5391-PA 1..177 1..177 943 100 Plus

LP04851.pep Sequence

Translation from 150 to 683

> LP04851.pep
MAFKYNTQMILLSCGLAVLLGFSEALPRYSRTKDLGTSASFPSFAYAPRP
QEPMTLTGNYNLIMPDYYDHHPAESMQLQNFANFYDAQMSPDSDLGMEES
QFLSHTPVRAPQPLTAEEKRARQQIPHVDINREKKALLKLKKGSTKPRGA
DHQEWDQFDYDLYSLNPGDSKKYNYDA*

LP04851.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16941-PA 181 GF16941-PA 8..181 6..177 759 81 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12529-PA 177 GG12529-PA 1..177 1..177 837 92.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19732-PA 181 GH19732-PA 23..179 23..174 527 66.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5391-PA 177 CG5391-PA 1..177 1..177 943 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22283-PA 174 GI22283-PA 1..173 10..176 612 69.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24333-PA 199 GL24333-PA 46..199 24..177 628 81.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18846-PA 199 GA18846-PA 46..199 24..177 629 81.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23663-PA 165 GM23663-PA 1..107 1..107 550 96.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18472-PA 177 GD18472-PA 1..177 1..177 881 92.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24076-PA 173 GJ24076-PA 1..172 10..176 625 69.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12994-PA 174 GK12994-PA 1..174 1..177 574 68.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24052-PA 177 GE24052-PA 1..177 1..177 865 96 Plus