Clone LP04889 Report

Search the DGRC for LP04889

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:48
Well:89
Vector:pOT2
Associated Gene/TranscriptCG7430-RA
Protein status:LP04889.pep: gold
Preliminary Size:2008
Sequenced Size:2041

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7430 2001-09-19 Blastp of sequenced clone
CG7430 2003-01-01 Sim4 clustering to Release 3
CG7430 2008-04-29 Release 5.5 accounting
CG7430 2008-08-15 Release 5.9 accounting
CG7430 2008-12-18 5.12 accounting

Clone Sequence Records

LP04889.complete Sequence

2041 bp (2041 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058740

> LP04889.complete
TGACGGACATATCGTATTTTGAACGATCATCAAGCTAATATTTTTATACA
CATCTTTTTCATACGAAAATGTTTTAGAATTTCAAATTCCAACAGAGTGG
AAAATCACCAAAACAATCGATAGCATCGCGGCCATCATATGACCACTATC
GAATGCACATCGCCAGCCCTGCGACCGCTCCGAGCCCCACAACACGAAAA
ACAGTCGGAAAAACACACATCAAACTAGTGTTGTGTTTGTAGTTAAATAA
CGATTATCCTCATAACTCGCCCGCACCAGCCATGCAATTCACGCTCCGTC
ATGTTGTTTCGGCAGTAGCCAAGACTCCTCTGCGCACCAATGCCGCCATT
CTGGGTGCCCTCAACGCCCGCTGCTACTCCAGCACCCACGAGGCGGACAT
CGTGGTGATTGGCTCCGGACCCGGTGGCTATGTCGCCGCCATCAAGGCCG
CCCAGATGGGCATGAAGACGGTCAGCGTGGAGAAGGAGGCAACTCTGGGC
GGCACCTGCCTGAATGTTGGCTGCATTCCCTCAAAGGCGCTGCTGAACAA
CTCCCACTACTACCACATGGCCCACTCCGGTGATCTGGAGAAACGTGGTA
TTAGCTGCGGCAGCGTTAGCCTGGATCTGGAGAAGCTTATGGGTCAAAAG
TCCAACGCCGTGAAGGCTTTGACCGGTGGCATTGCCATGCTTTTCAAGAA
GAACAAGGTCACACAGCTGACGGGCTTCGGCACCATCGTCAATCCCAACG
AGGTGGAGGTTAAGAAATCCGACGGCTCCACGGAGACTGTCAAGACCAAG
AACATCCTCATCGCCACCGGCTCGGAGGTTACCCCCTTCCCTGGCATTGA
AATCGACGAGGAAGTTATTGTGAGCAGCACTGGCGCCCTGAAGCTGGCCA
AGGTGCCCAAGCATCTGGTTGTCATCGGCGCCGGTGTCATTGGCCTGGAG
CTGGGTTCGGTATGGTCGCGTCTGGGCGCTGAGGTCACTGCCATTGAGTT
CATGGATACGATCGGCGGCGTGGGCATCGATAACGAAGTCTCCAAGACGT
TCCAAAAGGTGCTCACCAAGCAGGGTCTTAAGTTCAAGCTGGGCACCAAG
GTGACGGCTGCCTCTCGCAGCGGCGACAACGTCACCGTGTCCGTGGAGAA
CGCCAAGTCTGGCGAGAAAGAGGAGATCCAGTGCGACGCCCTGCTGGTCA
GTGTTGGACGTCGTCCCTACACCGAAGGTTTGGGTCTGGAGGCCGTGGGC
ATTGTTAAGGATGACCGCGGCAGGATCCCCGTCAACGCCACTTTCCAAAC
TGTGGTGCCCAATATTTACGCCATCGGCGACTGCATCCACGGACCCATGT
TGGCGCACAAGGCTGAAGATGAGGGCCTCATCACCATTGAGGGCATCAAC
GGCGGCCACGTGCACATCGACTACAACTGCGTGCCCAGTGTAGTCTACAC
GCATCCCGAGGTCGCGTGGGTTGGCAAGAGCGAGGAGCAACTGAAGCAGG
AGGGTGTTGCCTACAAGGTGGGCAAGTTCCCCTTCCTGGCCAACTCTCGT
GCCAAGACCAACAACGACACCGACGGTTTCGTCAAGGTTCTGGCCGACCA
GGCCACCGATAAGATCCTGGGAACCCATATTATCGGACCTGGTGCCGGCG
AGCTCATTAACGAGGCTGTGCTGGCCATGGAGTACGGAGCCGCTGCCGAG
GACGTTGCCCGCGTTTGCCATGCGCATCCAACATGTTCCGAGGCCCTGCG
TGAGGCCAATGTGGCAGCTGCCTTTGGCAAACCCATCAACTTCTAAGCAC
TTCCCAATCTCTGCCAGATAGTGAAGAATTTTGCACCGCGTTTGAAATCT
TTGAATAACCCCTATTCGAAAAATTATCCTGACGGCCGAAACGACAGTCT
CCGCATATTTGTAACTCTCAATGTAGGAACAGAAAAGTGGAAAATATAAA
TAATGGTAATGGCGCCAGGCGTTAATTGCAATGTAATATGTGTATTAAGC
TAGAATAAATACAACACTGTTTGAAAAAAAAAAAAAAAAAA

LP04889.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7430-RA 2158 CG7430-RA 12..2038 1..2027 10135 100 Plus
CG7430.a 2102 CG7430.a 33..1982 78..2027 9750 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17837748..17838626 852..1730 4395 100 Plus
chr3L 24539361 chr3L 17837155..17837684 322..851 2650 100 Plus
chr3L 24539361 chr3L 17836526..17836848 1..323 1615 100 Plus
chr3L 24539361 chr3L 17838690..17838982 1731..2023 1465 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:49:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17848138..17849016 852..1730 4395 100 Plus
3L 28110227 3L 17847545..17848074 322..851 2650 100 Plus
3L 28110227 3L 17846916..17847238 1..323 1615 100 Plus
3L 28110227 3L 17849080..17849376 1731..2027 1485 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17841238..17842116 852..1730 4395 100 Plus
3L 28103327 3L 17840645..17841174 322..851 2650 100 Plus
3L 28103327 3L 17840016..17840338 1..323 1615 100 Plus
3L 28103327 3L 17842180..17842476 1731..2027 1485 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:34:33 has no hits.

LP04889.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:35:35 Download gff for LP04889.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17836526..17836848 1..323 100 -> Plus
chr3L 17837157..17837684 324..851 100 -> Plus
chr3L 17837748..17838626 852..1730 100 -> Plus
chr3L 17838690..17838982 1731..2023 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:36:04 Download gff for LP04889.complete
Subject Subject Range Query Range Percent Splice Strand
CG7430-RA 1..1515 282..1796 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:58:23 Download gff for LP04889.complete
Subject Subject Range Query Range Percent Splice Strand
CG7430-RA 1..1515 282..1796 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:34:33 Download gff for LP04889.complete
Subject Subject Range Query Range Percent Splice Strand
CG7430-RA 1..1515 282..1796 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:27:37 Download gff for LP04889.complete
Subject Subject Range Query Range Percent Splice Strand
CG7430-RA 1..1515 282..1796 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:44:11 Download gff for LP04889.complete
Subject Subject Range Query Range Percent Splice Strand
CG7430-RA 1..1515 282..1796 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:45:08 Download gff for LP04889.complete
Subject Subject Range Query Range Percent Splice Strand
CG7430-RA 1..2023 1..2023 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:58:23 Download gff for LP04889.complete
Subject Subject Range Query Range Percent Splice Strand
CG7430-RA 1..2023 1..2023 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:33 Download gff for LP04889.complete
Subject Subject Range Query Range Percent Splice Strand
CG7430-RA 1..2023 1..2023 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:27:37 Download gff for LP04889.complete
Subject Subject Range Query Range Percent Splice Strand
CG7430-RA 1..2023 1..2023 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:44:11 Download gff for LP04889.complete
Subject Subject Range Query Range Percent Splice Strand
CG7430-RA 1..2023 1..2023 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:35:35 Download gff for LP04889.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17846916..17847238 1..323 100 -> Plus
3L 17847547..17848074 324..851 100 -> Plus
3L 17848138..17849016 852..1730 100 -> Plus
3L 17849080..17849372 1731..2023 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:35:35 Download gff for LP04889.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17846916..17847238 1..323 100 -> Plus
3L 17847547..17848074 324..851 100 -> Plus
3L 17848138..17849016 852..1730 100 -> Plus
3L 17849080..17849372 1731..2023 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:35:35 Download gff for LP04889.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17846916..17847238 1..323 100 -> Plus
3L 17847547..17848074 324..851 100 -> Plus
3L 17848138..17849016 852..1730 100 -> Plus
3L 17849080..17849372 1731..2023 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:33 Download gff for LP04889.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17842180..17842472 1731..2023 100   Plus
arm_3L 17840016..17840338 1..323 100 -> Plus
arm_3L 17840647..17841174 324..851 100 -> Plus
arm_3L 17841238..17842116 852..1730 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:05:00 Download gff for LP04889.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17840016..17840338 1..323 100 -> Plus
3L 17840647..17841174 324..851 100 -> Plus
3L 17841238..17842116 852..1730 100 -> Plus
3L 17842180..17842472 1731..2023 100   Plus

LP04889.pep Sequence

Translation from 281 to 1795

> LP04889.pep
MQFTLRHVVSAVAKTPLRTNAAILGALNARCYSSTHEADIVVIGSGPGGY
VAAIKAAQMGMKTVSVEKEATLGGTCLNVGCIPSKALLNNSHYYHMAHSG
DLEKRGISCGSVSLDLEKLMGQKSNAVKALTGGIAMLFKKNKVTQLTGFG
TIVNPNEVEVKKSDGSTETVKTKNILIATGSEVTPFPGIEIDEEVIVSST
GALKLAKVPKHLVVIGAGVIGLELGSVWSRLGAEVTAIEFMDTIGGVGID
NEVSKTFQKVLTKQGLKFKLGTKVTAASRSGDNVTVSVENAKSGEKEEIQ
CDALLVSVGRRPYTEGLGLEAVGIVKDDRGRIPVNATFQTVVPNIYAIGD
CIHGPMLAHKAEDEGLITIEGINGGHVHIDYNCVPSVVYTHPEVAWVGKS
EEQLKQEGVAYKVGKFPFLANSRAKTNNDTDGFVKVLADQATDKILGTHI
IGPGAGELINEAVLAMEYGAAAEDVARVCHAHPTCSEALREANVAAAFGK
PINF*

LP04889.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24574-PA 504 GF24574-PA 1..504 1..504 2537 94.6 Plus
Dana\GF23459-PA 514 GF23459-PA 30..505 37..500 383 28 Plus
Dana\GF19373-PA 537 GF19373-PA 48..527 30..499 372 27.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13635-PA 504 GG13635-PA 1..504 1..504 2619 98.4 Plus
Dere\GG19308-PA 491 GG19308-PA 7..471 35..489 369 27.7 Plus
Dere\GG16263-PA 518 GG16263-PA 31..509 36..500 361 27.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17093-PA 504 GH17093-PA 1..504 1..504 2464 90.7 Plus
Dgri\GH12753-PA 596 GH12753-PA 113..586 35..499 367 27.5 Plus
Dgri\GH16699-PA 514 GH16699-PA 74..505 72..500 357 27.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7430-PB 504 CG7430-PB 1..504 1..504 2569 100 Plus
CG7430-PA 504 CG7430-PA 1..504 1..504 2569 100 Plus
Trxr-1-PC 508 CG2151-PC 8..486 21..487 398 28 Plus
Trxr-1-PA 491 CG2151-PA 7..469 35..487 389 28.1 Plus
Trxr-1-PB 596 CG2151-PB 112..574 35..487 389 28.1 Plus
Trxr-2-PA 516 CG11401-PA 31..507 36..500 377 27.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11696-PA 504 GI11696-PA 1..504 1..504 2433 90.3 Plus
Dmoj\GI15898-PA 601 GI15898-PA 119..591 36..499 354 26.9 Plus
Dmoj\GI11388-PA 515 GI11388-PA 75..505 72..499 348 27.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22852-PA 504 GL22852-PA 1..504 1..504 2495 93.7 Plus
Dper\GL23230-PA 512 GL23230-PA 28..503 36..500 395 26.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20345-PA 504 GA20345-PA 1..504 1..504 2495 93.7 Plus
Dpse\GA10979-PA 512 GA10979-PA 7..503 17..500 380 27 Plus
Dpse\GA15270-PA 490 GA15270-PA 7..480 35..499 372 27.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25722-PA 504 GM25722-PA 1..504 1..504 2647 99.8 Plus
Dsec\GM22453-PA 516 GM22453-PA 31..507 36..500 370 27.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14729-PA 504 GD14729-PA 1..504 1..504 2642 99.6 Plus
Dsim\GD15034-PA 516 GD15034-PA 64..507 61..500 331 27.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11371-PA 504 GJ11371-PA 1..504 1..504 2478 92.1 Plus
Dvir\GJ16646-PA 556 GJ16646-PA 74..546 36..499 371 27.3 Plus
Dvir\GJ11643-PA 517 GJ11643-PA 77..508 72..500 360 27.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12667-PA 504 GK12667-PA 1..504 1..504 2515 93.8 Plus
Dwil\GK24920-PA 550 GK24920-PA 55..540 26..499 341 26.8 Plus
Dwil\GK16764-PA 466 GK16764-PA 24..400 34..403 330 28.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19931-PA 504 GE19931-PA 1..504 1..504 2625 98.6 Plus
Dyak\GE15773-PA 491 GE15773-PA 7..471 35..489 364 27.5 Plus
Dyak\GE23284-PA 516 GE23284-PA 31..507 36..500 357 27.3 Plus

LP04889.hyp Sequence

Translation from 281 to 1795

> LP04889.hyp
MQFTLRHVVSAVAKTPLRTNAAILGALNARCYSSTHEADIVVIGSGPGGY
VAAIKAAQMGMKTVSVEKEATLGGTCLNVGCIPSKALLNNSHYYHMAHSG
DLEKRGISCGSVSLDLEKLMGQKSNAVKALTGGIAMLFKKNKVTQLTGFG
TIVNPNEVEVKKSDGSTETVKTKNILIATGSEVTPFPGIEIDEEVIVSST
GALKLAKVPKHLVVIGAGVIGLELGSVWSRLGAEVTAIEFMDTIGGVGID
NEVSKTFQKVLTKQGLKFKLGTKVTAASRSGDNVTVSVENAKSGEKEEIQ
CDALLVSVGRRPYTEGLGLEAVGIVKDDRGRIPVNATFQTVVPNIYAIGD
CIHGPMLAHKAEDEGLITIEGINGGHVHIDYNCVPSVVYTHPEVAWVGKS
EEQLKQEGVAYKVGKFPFLANSRAKTNNDTDGFVKVLADQATDKILGTHI
IGPGAGELINEAVLAMEYGAAAEDVARVCHAHPTCSEALREANVAAAFGK
PINF*

LP04889.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7430-PB 504 CG7430-PB 1..504 1..504 2569 100 Plus
CG7430-PA 504 CG7430-PA 1..504 1..504 2569 100 Plus
Trxr-1-PC 508 CG2151-PC 8..486 21..487 398 28 Plus
Trxr-1-PA 491 CG2151-PA 7..469 35..487 389 28.1 Plus
Trxr-1-PB 596 CG2151-PB 112..574 35..487 389 28.1 Plus