Clone LP04941 Report

Search the DGRC for LP04941

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:49
Well:41
Vector:pOT2
Associated Gene/TranscriptCG12118-RA
Protein status:LP04941.pep: gold
Preliminary Size:1428
Sequenced Size:1249

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12118 2001-01-01 Release 2 assignment
CG12118 2001-07-04 Blastp of sequenced clone
CG12118 2003-01-01 Sim4 clustering to Release 3
CG12118 2008-04-29 Release 5.5 accounting
CG12118 2008-08-15 Release 5.9 accounting
CG12118 2008-12-18 5.12 accounting

Clone Sequence Records

LP04941.complete Sequence

1249 bp (1249 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052039

> LP04941.complete
AATCCAGTAGCAGCTGTGCGTCAAAAAAAAACTAGTCGTCTCTACTTTCA
AATAGGCAATAGATTTAATCTGAAAACAAAATTCAACGTAAAATTCTAAA
GCCACATAAAATCCGGCATTATTTGAAAGCGTCTGCAGAGCACAGCACTC
CAAATCCAGTTCCGCCATCCAAGATTCTACGCATTTACAGAAGCATATGA
TATAATAATGTCTCGATCATTGAGTCGCGTATTGGGTACCATCTGGGCGC
CATCCCTGTCCATTTCACATACCGTACATCGCGGATCCAACAGACTGAAC
GACCTACTGAGCACCAAGGTGACCAACACGGCCATCATTCCGGTGGCTAG
ATACTCCAAGCGAAATGGCCCACCGTCGGATGCCGGCGGATACTTTAAGA
CCGTCAAGTCGCGGGATCTCGACGACGACGATGAGCTAAATAGTTTGGAG
AGTGAGCCCAACTGGGAACTGACCGCCGAAAGAGGCAATCGCTTCTATCT
GCCAAATGGCATTGGGCCCGCCTGGCAGGGCGACAGCACCACCGTCGGTC
TGCTCGAGCCGCTTGGCCACCTGGTTAACTTTCACAAGGGTCCCAATACG
GACAAATCGCGCCTGGAATTCACCTGCTGTAAGTGTCCCCTGCTTATCCG
TGTGCCACTCTTGGAGATCTTCCCGGTACCCGTCGTCGCACAGCAGTGCA
TAAACATCACCATGCTTGTTCTCAGCCACGAAGGAGACATCGAAATGGGC
GCTGCCAAGTTTGTCCTGGCAGCGCGGGAGATGTGCGATCGCCTGCTATC
GTACGGCTACTGGGCGGACTTCATGAATCCGTTTAGCGGACGTCCATTCT
TTCTACCACGGGAAGGGGCTAATCTATACAGGCTGGACTCACGCTTCCGT
GGTCTAAACATGCGGCTTTCGGAACAGAACCGTTGCACAGTGATTTCCGC
CGAGAAGAACGACAGCACCCGCTTCTCGGGCACCATCTATAGCACAGCGC
CGAATCACTATGGGCAGCTGATGAAGCTGCTTGTGCCGCCGCCGCACAAG
GTTGCCCATTGACGCGGATGATCAACGAAGTGGTTGCCATTGGAGTTGGA
CTCCAAATGATGAAGCCGTAGCCTTTTAAGCGATGATGACTGTGTTAACT
GTTTAGGTTTCCTGTTCCGACACTGTATATAGCCGACAATGCTGGTGTTA
TATGCTGCGAAATATAATCGATAAGAATTTGAAAAAAAAAAAAAAAAAA

LP04941.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12118-RA 1332 CG12118-RA 95..1326 1..1233 6125 99.9 Plus
CG12118-RB 1315 CG12118-RB 265..1309 189..1233 5225 100 Plus
CG12106-RA 1356 CG12106-RA 750..1225 1233..758 2380 100 Minus
CG12118-RB 1315 CG12118-RB 95..267 1..174 830 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9087362..9087949 759..172 2940 100 Minus
chrX 22417052 chrX 9086561..9087034 1231..758 2370 100 Minus
chrX 22417052 chrX 9088007..9088178 173..1 815 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:49:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9195551..9196138 759..172 2940 100 Minus
X 23542271 X 9194748..9195223 1233..758 2380 100 Minus
X 23542271 X 9196196..9196367 173..1 815 99.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9203649..9204236 759..172 2940 100 Minus
X 23527363 X 9202846..9203321 1233..758 2380 100 Minus
X 23527363 X 9204294..9204465 173..1 825 99.4 Minus
Blast to na_te.dros performed 2019-03-16 04:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 9485..9567 22..104 126 64.3 Plus

LP04941.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:35:40 Download gff for LP04941.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9086561..9087032 760..1231 100 <- Minus
chrX 9087362..9087947 174..759 100 <- Minus
chrX 9088007..9088178 1..173 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:36:05 Download gff for LP04941.complete
Subject Subject Range Query Range Percent Splice Strand
CG12118-RB 1..855 208..1062 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:14:14 Download gff for LP04941.complete
Subject Subject Range Query Range Percent Splice Strand
CG12118-RB 1..855 208..1062 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:34:44 Download gff for LP04941.complete
Subject Subject Range Query Range Percent Splice Strand
CG12118-RA 1..855 208..1062 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:45:34 Download gff for LP04941.complete
Subject Subject Range Query Range Percent Splice Strand
CG12118-RB 1..855 208..1062 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:44:19 Download gff for LP04941.complete
Subject Subject Range Query Range Percent Splice Strand
CG12118-RA 1..855 208..1062 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:07:16 Download gff for LP04941.complete
Subject Subject Range Query Range Percent Splice Strand
CG12118-RA 95..1324 1..1231 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:14:13 Download gff for LP04941.complete
Subject Subject Range Query Range Percent Splice Strand
CG12118-RA 95..1324 1..1231 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:44 Download gff for LP04941.complete
Subject Subject Range Query Range Percent Splice Strand
CG12118-RA 48..1277 1..1231 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:45:34 Download gff for LP04941.complete
Subject Subject Range Query Range Percent Splice Strand
CG12118-RA 95..1324 1..1231 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:44:19 Download gff for LP04941.complete
Subject Subject Range Query Range Percent Splice Strand
CG12118-RA 48..1277 1..1231 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:35:40 Download gff for LP04941.complete
Subject Subject Range Query Range Percent Splice Strand
X 9194750..9195221 760..1231 100 <- Minus
X 9195551..9196136 174..759 100 <- Minus
X 9196196..9196367 1..173 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:35:40 Download gff for LP04941.complete
Subject Subject Range Query Range Percent Splice Strand
X 9194750..9195221 760..1231 100 <- Minus
X 9195551..9196136 174..759 100 <- Minus
X 9196196..9196367 1..173 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:35:40 Download gff for LP04941.complete
Subject Subject Range Query Range Percent Splice Strand
X 9194750..9195221 760..1231 100 <- Minus
X 9195551..9196136 174..759 100 <- Minus
X 9196196..9196367 1..173 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:44 Download gff for LP04941.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9088783..9089254 760..1231 100 <- Minus
arm_X 9089584..9090169 174..759 100 <- Minus
arm_X 9090229..9090400 1..173 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:23:22 Download gff for LP04941.complete
Subject Subject Range Query Range Percent Splice Strand
X 9202848..9203319 760..1231 100 <- Minus
X 9203649..9204234 174..759 100 <- Minus
X 9204294..9204465 1..173 99   Minus

LP04941.hyp Sequence

Translation from 207 to 1061

> LP04941.hyp
MSRSLSRVLGTIWAPSLSISHTVHRGSNRLNDLLSTKVTNTAIIPVARYS
KRNGPPSDAGGYFKTVKSRDLDDDDELNSLESEPNWELTAERGNRFYLPN
GIGPAWQGDSTTVGLLEPLGHLVNFHKGPNTDKSRLEFTCCKCPLLIRVP
LLEIFPVPVVAQQCINITMLVLSHEGDIEMGAAKFVLAAREMCDRLLSYG
YWADFMNPFSGRPFFLPREGANLYRLDSRFRGLNMRLSEQNRCTVISAEK
NDSTRFSGTIYSTAPNHYGQLMKLLVPPPHKVAH*

LP04941.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12118-PB 284 CG12118-PB 1..284 1..284 1510 100 Plus
CG12118-PA 284 CG12118-PA 1..284 1..284 1510 100 Plus

LP04941.pep Sequence

Translation from 207 to 1061

> LP04941.pep
MSRSLSRVLGTIWAPSLSISHTVHRGSNRLNDLLSTKVTNTAIIPVARYS
KRNGPPSDAGGYFKTVKSRDLDDDDELNSLESEPNWELTAERGNRFYLPN
GIGPAWQGDSTTVGLLEPLGHLVNFHKGPNTDKSRLEFTCCKCPLLIRVP
LLEIFPVPVVAQQCINITMLVLSHEGDIEMGAAKFVLAAREMCDRLLSYG
YWADFMNPFSGRPFFLPREGANLYRLDSRFRGLNMRLSEQNRCTVISAEK
NDSTRFSGTIYSTAPNHYGQLMKLLVPPPHKVAH*

LP04941.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22631-PA 288 GF22631-PA 1..280 1..280 929 66.6 Plus
Dana\GF14778-PA 2023 GF14778-PA 98..310 69..276 171 28.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18995-PA 285 GG18995-PA 1..284 1..283 1199 79.2 Plus
Dere\GG21069-PA 2028 GG21069-PA 121..317 88..276 163 26.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17752-PA 284 GH17752-PA 1..277 1..282 819 57 Plus
Dgri\GH11695-PA 1958 GH11695-PA 62..238 96..265 193 28.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12118-PB 284 CG12118-PB 1..284 1..284 1510 100 Plus
CG12118-PA 284 CG12118-PA 1..284 1..284 1510 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15506-PA 288 GI15506-PA 1..281 1..282 879 61.8 Plus
Dmoj\GI17139-PA 1984 GI17139-PA 46..261 43..265 199 25.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20349-PA 284 GL20349-PA 1..280 1..284 806 56.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11412-PA 284 GA11412-PA 1..273 1..277 791 56.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13671-PA 284 GM13671-PA 1..284 1..284 1303 88 Plus
Dsec\GM17219-PA 2010 GM17219-PA 102..298 88..276 170 28.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16078-PA 284 GD16078-PA 1..284 1..284 1311 87.7 Plus
Dsim\GD24093-PA 2003 GD24093-PA 82..291 70..276 184 29.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19266-PA 288 GJ19266-PA 1..281 1..282 878 60.6 Plus
Dvir\GJ16181-PA 1978 GJ16181-PA 59..256 71..265 219 29.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25137-PA 292 GK25137-PA 1..284 1..276 810 55.9 Plus
Dwil\GK19083-PA 250 GK19083-PA 59..237 88..265 165 27.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17406-PA 285 GE17406-PA 1..285 1..284 1199 78.9 Plus