Clone LP05025 Report

Search the DGRC for LP05025

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:50
Well:25
Vector:pOT2
Associated Gene/TranscriptCG5347-RA
Protein status:LP05025.pep: gold
Preliminary Size:962
Sequenced Size:1245

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5347 2002-01-01 Sim4 clustering to Release 2
CG5347 2002-05-30 Blastp of sequenced clone
CG5347 2003-01-01 Sim4 clustering to Release 3
CG5347 2008-04-29 Release 5.5 accounting
CG5347 2008-08-15 Release 5.9 accounting
CG5347 2008-12-18 5.12 accounting

Clone Sequence Records

LP05025.complete Sequence

1245 bp (1245 high quality bases) assembled on 2002-05-30

GenBank Submission: AY118346

> LP05025.complete
AAATTGTTCAAAAATTTTACACGAAAAAAAGTATATTTTTTTTTAAATTT
TACAACGCTATTTAAAAACCAAAAAATAAAGTTCTCAAAAATACTTTCAT
CATAATGTCGTATCGCCGTAGTCAAACAATCTGTCGCTTCCATTTGCTTG
GAATTTGTCGTTTTGGTGATTTATGCCGATTCTCGCACGACGAGACGACA
CCAAATGACAACCAGAGTCCGCAGATATCGGAAATCGCGGATGAAGTCGT
GGAGAATGAGCAAGTGGTGGCCTCCACCAGTAGCTACAGTCGCCAGATGA
CCTGGGCAAATGCACCAGAGTTTGTTCCCAGGTACAAAGCCAATTCTGCC
GATTTCCAAGCAACTGAAGGTGTCCAGGATATTTGTCCATATGGTGGCAG
CTGTATCTGGGGCAGTAAGTGCTCGTATCCACTTCACATGGAGATTTGCA
AGATGTGCGACCTTTACTGCCTCCACCCGATGGATCAGAACCAACGCCGT
GCGCACAATCGTGAGTGTCTGGAGCAGCACGAGCAGGCGATGGAGCTATC
TTTTGCAATAGCCAGATCCAAGGACAAGATGTGCGGCATTTGTTTCGATA
CCGTCGTGGAGAAGAAGGGACGTGAACGTCGCTTTGGCATCTTGTCCAAG
TGCAAGCACATATTCTGTTTGACGTGCATTCGCACATGGCGTCAGGCCCA
TCAATTTGAGGCCACTGTGACGCGTGGTTGCCCCGAATGTCGCGTCTTTT
CGGAATTCGTGTGCCCTAGTGCCTACTGGGTGGATACAAAGGAGGAGAAG
GACAAGTTGCTAAGCGAATATCGCGCGGCAATGGGCGCCAAGGATTGCAA
GTACTTCAATGGGGGCTTGGGCAAATGTCCCTTTGGAAACAAGTGCTTCT
ACAGGCACCATCGTCGTTGTGACGATAACCAGACACAATCAAATGCCGTC
AATTCAGACTGATGGCTATGACAATATGACTATTGATTTTAATGAAATAC
CATTCATGGCATTTGACCGATCGACTGAATTTCAATTTGATCGATCAATT
TCTCAGTGACTCGAGCGATACGTCCATTTCAAAGAAAATCAAAGAGAACA
AAGCAACTTTTGTTAGACGGCTGAGGAGACACGGTTTATAGACTTAGTCT
TGGTCCTTGCCAGAGACTATAATGTACAACACTGAGCTTAATATAGCTTC
GTTCATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LP05025.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5347-RA 1210 CG5347-RA 1..1208 1..1208 6040 100 Plus
CG5334-RA 760 CG5334-RA 200..568 535..903 1425 92.4 Plus
Mkrn1-RB 2173 Mkrn1-RB 697..1049 504..856 655 79 Plus
CG5334-RA 760 CG5334-RA 684..760 1048..1124 355 97.4 Plus
CG5334-RA 760 CG5334-RA 30..92 128..190 165 84.1 Plus
CG5334-RA 760 CG5334-RA 102..151 203..252 145 86 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 14667070..14668277 1..1208 6040 100 Plus
chrX 22417052 chrX 14665854..14666222 535..903 1425 92.4 Plus
chrX 22417052 chrX 14666338..14666498 1048..1208 775 98.8 Plus
chr3L 24539361 chr3L 21521288..21521565 710..433 460 77.7 Minus
chr3L 24539361 chr3L 21520783..21520963 908..728 320 78.5 Minus
chr3L 24539361 chr3L 18712268..18712510 803..561 270 74.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:49:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14776774..14777981 1..1208 6040 100 Plus
X 23542271 X 14775558..14775926 535..903 1425 92.4 Plus
X 23542271 X 14776042..14776202 1048..1208 775 98.8 Plus
3L 28110227 3L 21532353..21532630 710..433 460 77.7 Minus
3L 28110227 3L 21531848..21532028 908..728 320 78.5 Minus
3L 28110227 3L 18722609..18722851 803..561 270 74.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 14784872..14786079 1..1208 6040 100 Plus
X 23527363 X 14783656..14784024 535..903 1425 92.4 Plus
X 23527363 X 14784140..14784300 1048..1208 775 98.7 Plus
3L 28103327 3L 21525453..21525659 710..504 435 80.6 Minus
3L 28103327 3L 21525000..21525128 856..728 255 79.8 Minus
3L 28103327 3L 18715814..18715951 698..561 240 78.2 Minus
X 23527363 X 14783486..14783548 128..190 165 84.1 Plus
X 23527363 X 14783342..14783385 1..44 145 88.6 Plus
X 23527363 X 14783558..14783607 203..252 145 86 Plus
Blast to na_te.dros performed 2019-03-16 06:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
Transpac 5249 Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). 3785..3867 78..2 121 66.3 Minus

LP05025.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:13:40 Download gff for LP05025.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 14667070..14668279 1..1210 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:36:10 Download gff for LP05025.complete
Subject Subject Range Query Range Percent Splice Strand
CG5347-RA 1..858 105..962 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:35:28 Download gff for LP05025.complete
Subject Subject Range Query Range Percent Splice Strand
CG5347-RA 1..858 105..962 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:17:10 Download gff for LP05025.complete
Subject Subject Range Query Range Percent Splice Strand
CG5347-RA 1..858 105..962 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:27:04 Download gff for LP05025.complete
Subject Subject Range Query Range Percent Splice Strand
CG5347-RA 1..858 105..962 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:18:08 Download gff for LP05025.complete
Subject Subject Range Query Range Percent Splice Strand
CG5347-RA 1..858 105..962 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:07:04 Download gff for LP05025.complete
Subject Subject Range Query Range Percent Splice Strand
CG5347-RA 1..1210 1..1210 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:35:28 Download gff for LP05025.complete
Subject Subject Range Query Range Percent Splice Strand
CG5347-RA 1..1210 1..1210 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:10 Download gff for LP05025.complete
Subject Subject Range Query Range Percent Splice Strand
CG5347-RA 1..1210 1..1210 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:27:04 Download gff for LP05025.complete
Subject Subject Range Query Range Percent Splice Strand
CG5347-RA 1..1210 1..1210 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:18:08 Download gff for LP05025.complete
Subject Subject Range Query Range Percent Splice Strand
CG5347-RA 1..1210 1..1210 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:13:40 Download gff for LP05025.complete
Subject Subject Range Query Range Percent Splice Strand
X 14776774..14777983 1..1210 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:13:40 Download gff for LP05025.complete
Subject Subject Range Query Range Percent Splice Strand
X 14776774..14777983 1..1210 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:13:40 Download gff for LP05025.complete
Subject Subject Range Query Range Percent Splice Strand
X 14776774..14777983 1..1210 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:10 Download gff for LP05025.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14670807..14672016 1..1210 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:59:33 Download gff for LP05025.complete
Subject Subject Range Query Range Percent Splice Strand
X 14784872..14786081 1..1210 99   Plus

LP05025.pep Sequence

Translation from 104 to 961

> LP05025.pep
MSYRRSQTICRFHLLGICRFGDLCRFSHDETTPNDNQSPQISEIADEVVE
NEQVVASTSSYSRQMTWANAPEFVPRYKANSADFQATEGVQDICPYGGSC
IWGSKCSYPLHMEICKMCDLYCLHPMDQNQRRAHNRECLEQHEQAMELSF
AIARSKDKMCGICFDTVVEKKGRERRFGILSKCKHIFCLTCIRTWRQAHQ
FEATVTRGCPECRVFSEFVCPSAYWVDTKEEKDKLLSEYRAAMGAKDCKY
FNGGLGKCPFGNKCFYRHHRRCDDNQTQSNAVNSD*

LP05025.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10705-PA 396 GF10705-PA 15..334 1..268 888 54.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17851-PA 290 GG17851-PA 1..290 1..285 1175 76.6 Plus
Dere\GG13225-PA 378 GG13225-PA 14..314 1..268 830 54.6 Plus
Dere\GG15726-PA 285 GG15726-PA 10..209 43..268 490 46 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14787-PA 386 GH14787-PA 22..324 5..268 864 55.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5347-PA 285 CG5347-PA 1..285 1..285 1588 100 Plus
Mkrn1-PC 386 CG7184-PC 14..322 1..268 901 56.6 Plus
Mkrn1-PB 386 CG7184-PB 14..322 1..268 901 56.6 Plus
Mkrn1-PA 386 CG7184-PA 14..322 1..268 901 56.6 Plus
CG5334-PA 210 CG5334-PA 67..208 144..285 611 76.1 Plus
CG12477-PA 265 CG12477-PA 18..208 55..268 438 43.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11841-PA 391 GI11841-PA 18..329 5..268 847 54.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11888-PA 185 GL11888-PA 1..123 146..268 542 78.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20164-PA 367 GA20164-PA 14..305 1..268 880 57.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12045-PA 289 GM12045-PA 1..289 1..285 1329 84.8 Plus
Dsec\GM22131-PA 386 GM22131-PA 14..322 1..268 862 55.9 Plus
Dsec\GM12044-PA 212 GM12044-PA 61..195 140..274 535 73.3 Plus
Dsec\GM14923-PA 266 GM14923-PA 91..208 151..268 441 63.6 Plus
Dsec\GM12044-PA 212 GM12044-PA 3..106 2..108 177 45.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12110-PA 386 GD12110-PA 14..322 1..268 862 55.9 Plus
Dsim\GD12329-PA 259 GD12329-PA 88..205 151..268 443 63.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13540-PA 390 GJ13540-PA 18..328 5..268 855 54.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20382-PA 394 GK20382-PA 19..332 1..268 870 55.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17153-PA 293 GE17153-PA 1..293 1..285 1161 74.7 Plus
Dyak\GE22322-PA 382 GE22322-PA 14..318 1..268 867 56.2 Plus
Dyak\GE22057-PA 269 GE22057-PA 10..210 47..268 456 42.3 Plus

LP05025.hyp Sequence

Translation from 104 to 961

> LP05025.hyp
MSYRRSQTICRFHLLGICRFGDLCRFSHDETTPNDNQSPQISEIADEVVE
NEQVVASTSSYSRQMTWANAPEFVPRYKANSADFQATEGVQDICPYGGSC
IWGSKCSYPLHMEICKMCDLYCLHPMDQNQRRAHNRECLEQHEQAMELSF
AIARSKDKMCGICFDTVVEKKGRERRFGILSKCKHIFCLTCIRTWRQAHQ
FEATVTRGCPECRVFSEFVCPSAYWVDTKEEKDKLLSEYRAAMGAKDCKY
FNGGLGKCPFGNKCFYRHHRRCDDNQTQSNAVNSD*

LP05025.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5347-PA 285 CG5347-PA 1..285 1..285 1588 100 Plus
Mkrn1-PC 386 CG7184-PC 14..322 1..268 901 56.6 Plus
Mkrn1-PB 386 CG7184-PB 14..322 1..268 901 56.6 Plus
Mkrn1-PA 386 CG7184-PA 14..322 1..268 901 56.6 Plus
CG5334-PA 210 CG5334-PA 67..208 144..285 611 76.1 Plus