Clone LP05054 Report

Search the DGRC for LP05054

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:50
Well:54
Vector:pOT2
Associated Gene/TranscriptCG3702-RA
Protein status:LP05054.pep: gold
Preliminary Size:2379
Sequenced Size:2359

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3702 2001-01-01 Release 2 assignment
CG3702 2001-07-04 Blastp of sequenced clone
CG3702 2003-01-01 Sim4 clustering to Release 3
CG3702 2008-04-29 Release 5.5 accounting
CG3702 2008-08-15 Release 5.9 accounting
CG3702 2008-12-18 5.12 accounting

Clone Sequence Records

LP05054.complete Sequence

2359 bp (2359 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052040

> LP05054.complete
TGAGAACACCGTGCTTTTCCATTCTGCGTCAAATCGATAGATTCTGAAAA
ATACCCCTTTCGATATCGAAGTTCTAATGGCTCGATAGGTCCTCAACACT
TACCTATCGATGACAGTAGCACAAGTTGTGCGGAAAACGGGAAACTAAGG
GAAAAGCGTGGAAAACCCTTGAGAACAGAGCATGTCGAAAGCAGGCGAAG
ATCAGCCCGCAGCAGAGGGTGCGGTGATTGCGGGCAATGGTAACGCTGAG
CTGGCCCAAAATGAAGGCCAGAATGAGCAACAACAACCCCCGCCGAATCA
GCCCACCCGCATGGAGTCCTTCTTTGCGATGACCAAGTCCCTCATCCTGC
GTGCCCTGATCATCTACTTTGTGAGCTCCTTTTTCCGACGACCTGCGCCC
GATGCCGCCAGTCAAGGCAAAAGTGTCGCTAATGCGGGTCCCAAGATCAC
GGCCTGGAATTACTTCGAGAACGGCACGGACTTTGACCTGCACGTGTGGT
TGTCGGAGAATCCCGATGTGGTTAACTTCCAGCAAAAGGCGAATCTCCTC
TGGCTACAGAAGGACCTCACCTATGGCGATTGGACGTCGGGCGTCAACGG
AGATGGCATTTACACGCACAGTTTGAAGCTTAAGACCAGCCAGCATCTGA
TGAACAATGGCAGTGTGTACCTACATGCCTTTGTCACGCGTACCGGCATG
AGTCCCGATCCCAAAGCCCCGAATTACGCCACCAAAATGGGCCACCAGCA
ACATCAGCTGAACAAGTTCAAGAAGTTGCGTGTGAACCGCAACTACAACT
TGCTGGCCAGCGAGAAGGAGAAGTTGGAGCACGAGCTCAAGCATGCGAAT
CTCAAGGATACCATCGTGTCTCACTGGCATCCTAATCTCACGGTCAATCT
CGTAGTGGACCAAACTAACTGGGCCGAGGGATCTGTGCCGCCGCCACTGG
ATGACTACGTAAAGTTCGTAGACGGCGGTAAGACCTATCTGCCCATCCTG
TTCGTCAACGACTACTGGAATCTTCAGCGGGAGTATCAACCCATTAATGA
GACCACTCCCGAACTGGAGCTGCACCTCACTTTCCAGCCGCTGGGCATGT
TCAAGTGGCAGCTGTATGCCGCCAAACAGATGAAGAACAAGTGGGCTGGC
AATATGCTCGGTGAGCTGATGGCCGCCAGCCAGCCGGAGGAGAGTGACGA
GGATCAGGACTCGCTGAAGGAGACTCTGCTGGACACCAATATCTACCTGC
TGGGCATCACAGTGGCCGTTTCCATACTGCATTCGGTGTTCGAACTGCTG
GCCTTCAAGAACGACATTCAGTTCTGGAACAATCGCAAGTCGCTCGAAGG
ACTGTCTGTACGATCGGTGTTCTTCGGTGTCTTCCAGTCACTAATCATCC
TGCTGTACGTGCTGGACAACGAGACCAACTTCATGATTCGCATCTCCTGT
TTCGTGGGACTGGGAATCGAGGTGTGGAAGATTCACAAGGTCGTGGATAT
CAACTACGATCACGATCAAAAGATTCTGGGAGTGCTGCCGAGAATCAGTT
TCCAGGACAAGGGCTCCTATTCGGAGAGCTCGACCAAAGACTATGACAAA
CTGGCCTTCAAGTACCTGGGCTGGGCATGCTTCCCGCTCCTGGTGGCCTA
CTTTGTCTACTCGTTGATCTACAACGAGCACAAGGGCTGGTACTCATTTG
TGCTCAACATGCTGTACGGCTATCTGCTGACCTTTGGCTTCATCCTGATG
ACGCCGCAGCTATTCATCAACTACAAGCTAAAGTCGGTGGCCCACATGCC
GTGGCGCATGATGACCTACAAGTTCCTCAACACCTTTATCGATGACATCT
TTGCGTTTGTGATCAAAATGCCCACAATGTACCGGTTGGGTTGCTTCCGC
GACGACATCATCTTCTTTGTGTTCCTCTACCAGCGCTGGCAGTATCGCGT
CGATTTGAAGCGCGTGAATGAGTTCGGCTTCTCCGGGGAGATGGAGCAGC
AGCATGCCGCCCAGAAGCTGGAGGGCAAGACAGCCAATGGAGCCATCGAA
GGTCCCCAGGCTGCGCCAGCGATCAAAAAGACAGCTGCACAAAAGAAGCA
GGATTAGAAGGAGTGCAGAGCTGTGACCACAGTATGCATTAGCATTAGAA
GACGCAATACCATATACTCCACTCCCCCAATATGTATGTAATCACTATCC
AGTATACATAGTCAAGTAATCCCGATAGAATCATTCTTAGGGCTAATTGT
ATGTACGTATGTTTGTGTTTTTGTTTTCCCCTGCCCTCCGCGCTTCTCGC
AGCGTTGGAAGATCTAATAAATTAAGCGTGAGATGATCCATAAAAAAAAA
AAAAAAAAA

LP05054.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3702-RA 2493 CG3702-RA 39..2380 1..2342 11710 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 4223833..4225951 2341..223 10445 99.5 Minus
chr2L 23010047 chr2L 4226028..4226252 225..1 1080 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:49:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4224649..4226768 2342..223 10600 100 Minus
2L 23513712 2L 4226845..4227069 225..1 1125 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4224649..4226768 2342..223 10600 100 Minus
2L 23513712 2L 4226845..4227069 225..1 1125 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:47:13 has no hits.

LP05054.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:48:00 Download gff for LP05054.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 4223833..4225950 224..2341 99 <- Minus
chr2L 4226030..4226252 1..223 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:36:11 Download gff for LP05054.complete
Subject Subject Range Query Range Percent Splice Strand
CG3702-RA 1..1926 182..2107 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:14:15 Download gff for LP05054.complete
Subject Subject Range Query Range Percent Splice Strand
CG3702-RA 1..1926 182..2107 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:26:51 Download gff for LP05054.complete
Subject Subject Range Query Range Percent Splice Strand
CG3702-RA 1..1926 182..2107 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:45:35 Download gff for LP05054.complete
Subject Subject Range Query Range Percent Splice Strand
CG3702-RA 1..1926 182..2107 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:59 Download gff for LP05054.complete
Subject Subject Range Query Range Percent Splice Strand
CG3702-RA 1..1926 182..2107 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:07:18 Download gff for LP05054.complete
Subject Subject Range Query Range Percent Splice Strand
CG3702-RA 29..2369 1..2341 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:14:15 Download gff for LP05054.complete
Subject Subject Range Query Range Percent Splice Strand
CG3702-RA 29..2369 1..2341 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:51 Download gff for LP05054.complete
Subject Subject Range Query Range Percent Splice Strand
CG3702-RA 29..2369 1..2341 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:45:35 Download gff for LP05054.complete
Subject Subject Range Query Range Percent Splice Strand
CG3702-RA 29..2369 1..2341 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:59 Download gff for LP05054.complete
Subject Subject Range Query Range Percent Splice Strand
CG3702-RA 29..2369 1..2341 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:48:00 Download gff for LP05054.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4224650..4226767 224..2341 100 <- Minus
2L 4226847..4227069 1..223 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:48:00 Download gff for LP05054.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4224650..4226767 224..2341 100 <- Minus
2L 4226847..4227069 1..223 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:48:00 Download gff for LP05054.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4224650..4226767 224..2341 100 <- Minus
2L 4226847..4227069 1..223 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:51 Download gff for LP05054.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4226847..4227069 1..223 100   Minus
arm_2L 4224650..4226767 224..2341 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:23:23 Download gff for LP05054.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4224650..4226767 224..2341 100 <- Minus
2L 4226847..4227069 1..223 100   Minus

LP05054.hyp Sequence

Translation from 181 to 2106

> LP05054.hyp
MSKAGEDQPAAEGAVIAGNGNAELAQNEGQNEQQQPPPNQPTRMESFFAM
TKSLILRALIIYFVSSFFRRPAPDAASQGKSVANAGPKITAWNYFENGTD
FDLHVWLSENPDVVNFQQKANLLWLQKDLTYGDWTSGVNGDGIYTHSLKL
KTSQHLMNNGSVYLHAFVTRTGMSPDPKAPNYATKMGHQQHQLNKFKKLR
VNRNYNLLASEKEKLEHELKHANLKDTIVSHWHPNLTVNLVVDQTNWAEG
SVPPPLDDYVKFVDGGKTYLPILFVNDYWNLQREYQPINETTPELELHLT
FQPLGMFKWQLYAAKQMKNKWAGNMLGELMAASQPEESDEDQDSLKETLL
DTNIYLLGITVAVSILHSVFELLAFKNDIQFWNNRKSLEGLSVRSVFFGV
FQSLIILLYVLDNETNFMIRISCFVGLGIEVWKIHKVVDINYDHDQKILG
VLPRISFQDKGSYSESSTKDYDKLAFKYLGWACFPLLVAYFVYSLIYNEH
KGWYSFVLNMLYGYLLTFGFILMTPQLFINYKLKSVAHMPWRMMTYKFLN
TFIDDIFAFVIKMPTMYRLGCFRDDIIFFVFLYQRWQYRVDLKRVNEFGF
SGEMEQQHAAQKLEGKTANGAIEGPQAAPAIKKTAAQKKQD*

LP05054.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3702-PB 641 CG3702-PB 1..641 1..641 3408 100 Plus
CG3702-PA 641 CG3702-PA 1..641 1..641 3408 100 Plus
CG4332-PA 562 CG4332-PA 79..535 141..596 662 31.6 Plus

LP05054.pep Sequence

Translation from 181 to 2106

> LP05054.pep
MSKAGEDQPAAEGAVIAGNGNAELAQNEGQNEQQQPPPNQPTRMESFFAM
TKSLILRALIIYFVSSFFRRPAPDAASQGKSVANAGPKITAWNYFENGTD
FDLHVWLSENPDVVNFQQKANLLWLQKDLTYGDWTSGVNGDGIYTHSLKL
KTSQHLMNNGSVYLHAFVTRTGMSPDPKAPNYATKMGHQQHQLNKFKKLR
VNRNYNLLASEKEKLEHELKHANLKDTIVSHWHPNLTVNLVVDQTNWAEG
SVPPPLDDYVKFVDGGKTYLPILFVNDYWNLQREYQPINETTPELELHLT
FQPLGMFKWQLYAAKQMKNKWAGNMLGELMAASQPEESDEDQDSLKETLL
DTNIYLLGITVAVSILHSVFELLAFKNDIQFWNNRKSLEGLSVRSVFFGV
FQSLIILLYVLDNETNFMIRISCFVGLGIEVWKIHKVVDINYDHDQKILG
VLPRISFQDKGSYSESSTKDYDKLAFKYLGWACFPLLVAYFVYSLIYNEH
KGWYSFVLNMLYGYLLTFGFILMTPQLFINYKLKSVAHMPWRMMTYKFLN
TFIDDIFAFVIKMPTMYRLGCFRDDIIFFVFLYQRWQYRVDLKRVNEFGF
SGEMEQQHAAQKLEGKTANGAIEGPQAAPAIKKTAAQKKQD*

LP05054.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14857-PA 642 GF14857-PA 1..642 1..641 3010 90.1 Plus
Dana\GF21323-PA 567 GF21323-PA 82..534 144..596 678 32.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24389-PA 643 GG24389-PA 1..643 1..641 3164 93.6 Plus
Dere\GG17760-PA 562 GG17760-PA 79..535 141..596 667 31.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11708-PA 651 GH11708-PA 1..651 1..641 2785 79.9 Plus
Dgri\GH24845-PA 581 GH24845-PA 177..561 229..607 650 34.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3702-PB 641 CG3702-PB 1..641 1..641 3408 100 Plus
CG3702-PA 641 CG3702-PA 1..641 1..641 3408 100 Plus
CG4332-PA 562 CG4332-PA 79..535 141..596 662 31.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16103-PA 643 GI16103-PA 29..643 41..641 2824 85.4 Plus
Dmoj\GI16179-PA 551 GI16179-PA 82..531 144..597 691 32.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16472-PA 652 GL16472-PA 1..652 1..641 2974 87.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17625-PA 652 GA17625-PA 1..652 1..641 2974 87.8 Plus
Dpse\GA18115-PA 573 GA18115-PA 184..571 230..633 684 35.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18101-PA 643 GM18101-PA 1..643 1..641 3395 98.3 Plus
Dsec\GM11606-PA 561 GM11606-PA 79..534 141..596 664 32 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11988-PA 643 GD11988-PA 1..643 1..641 3388 98 Plus
Dsim\GD17105-PA 562 GD17105-PA 79..535 141..596 673 31.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16195-PA 647 GJ16195-PA 6..647 14..641 2824 82.4 Plus
Dvir\GJ16669-PA 559 GJ16669-PA 82..536 144..596 675 31.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24449-PA 636 GK24449-PA 1..636 1..641 2874 85.3 Plus
Dwil\GK16182-PA 551 GK16182-PA 177..541 231..612 666 36.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14759-PA 643 GE14759-PA 1..643 1..641 3350 96.6 Plus
Dyak\GE17049-PA 561 GE17049-PA 79..535 141..596 672 32.1 Plus