Clone LP05116 Report

Search the DGRC for LP05116

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:51
Well:16
Vector:pOT2
Associated Gene/TranscriptCG9701-RA
Protein status:LP05116.pep: gold
Preliminary Size:1927
Sequenced Size:2004

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9701 2001-01-01 Release 2 assignment
CG9701 2001-11-29 Blastp of sequenced clone
CG9701 2003-01-01 Sim4 clustering to Release 3
CG9701 2008-04-29 Release 5.5 accounting
CG9701 2008-08-15 Release 5.9 accounting
CG9701 2008-12-18 5.12 accounting

Clone Sequence Records

LP05116.complete Sequence

2004 bp (2004 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069733

> LP05116.complete
GCCGTTCAACATCTAAACAACTCGCTCGGGAATCGTGGGCGCTGCGAAAG
AATCGCGAAAAGTTTCAAAACTCGGCGAAAAAGTTTCGGGCAAAAAAACG
CTCGGTTTTTTGCTCAAAGTTTTCGTTTCGCATACGTTAGTTTCGTGCCC
AAGGATATACCTTAAGGATATAAAACAAAAAAAAACATGATGCAAATAAT
ACTGCCTCTTTTTGTGCTGACTGCCTCATGTCTTGGCAGTCCGGTGAGCC
AAACCCGTCGATTCCCCAACGACTTTCTCTGGGGCGTTGGATCATCTTCA
TACCAAATCGAAGGCGGCTGGAACGCGGATGACAAGGGGGAGTCGATCTG
GGACTTTCTCACCCACACTCATCCCGAGAAAATAGTCGATCGATCCAATG
GCGATGTCTCGGCGGACAGCTATCATCAGTGGAAGCGCGATGTGCAAATG
GTCAAGGAGCTGCACGTGGGCACCTATCGCTTCTCCCTGTCCTGGCCACG
AATTATGCCCGGTGGCTATATGAACCACGTCAGTACAGCCGGCATTAAGT
ACTATTCCAACCTGATCGACGAACTGCTGCGGTACAACATCACTCCGATG
GTGACGATCTATCACTGGGAATTGCCGCAGAAGTTGCAGGAGCTGGGTGG
CTGGACCAATCCGGAGATAATTCCGCTTTTCAAGGACTATGCTCGCCTGG
TGCTGGAAATGTACGGAGATCGGGTGAAGATCTGGACCACCGTCAATGAG
CCGTGGCATGTGTGTGAGCACGGTTACGGAGTGGATTATATGGCACCTTC
GTACAACTATCCAGGCATTCCCGCCTACCTCTGTGGTCACAATCTGCTGA
AGGCTCACGCCGAGGTGGTGCACATGTACCGGGAGCTCTTCCAGCCGCGT
CAAGGTGGACGCATGGGCATCACACTGGATACGTCGTGGCCAGAGCCCAG
GGATCCCAACTCCGCCGAGGATCGTGAGGCCTCCGAGCGAGCCATGCAGT
TCTATGTAGGCTGGTTCGGTCATCCCATCTTTTCCAAGCACGGTAACTAT
CCCAAGGTGATGATCGAGCGCATTCGGAACTTGAGCAAGGAGCAGGGTTT
CGGAGCACGATCCAGACTGCCTGAGTTCACCACTGAGGAGATTCATCGCA
TACGCGGCACCTCCGACTTCTTCGGCATCAATTCCTATACCAGCAACCTG
GTCACCTCCAATGGTCACAATAATACCGGCAAGTTTCCAGTTCCATCCTT
TAATCACGACATGGGCGTGGTCGAGAGCCAGGAGGGCGTCGATTGGCCCG
GTTCCGGATCCGTTTGGCTCAAGGTCTATCCCAAGGGAATGTACAATCTG
TTGATGTGGATACACCGGGAGTACAATGCGCCCGAGATAATCGTTACGGA
GAACGGAGTCAGTGATCGCGGTGGTCTGGAGGACTATGCCCGCGTGGACT
ACTACAATCTCTATCTGTCGGCGGTTCTGGATGCCATGGAGGATGGAGCG
AATATCAGTGGCTACATCGCCTGGAGTCTGATGGACAGCTATGAGTGGAA
GGCAGGCTTCTCGGAGAAATTCGGTCTCTATCATGTGGACTTCAACTCAC
CGCAACGCACCAGAACGCCCAAGATCTCGGCGAGAGTATTCGCCCAGCTC
TGCAAGACAAACACCATCGATTGGAGCTACAGACCCAAGCTGGATGAGGA
GCAGCAGCTGGTGGCCATGGCTCAGCTGCCGGCGGAAGCCAGGACAAGTG
GTGCTAGCGGTGCTGTCAGTTGGAGTCTGATGGGCATTCTACTGCTGGCT
CTGCTTAGATAAGAAAATAAATATGATTAAAAAGGAGAGAAAGAGCCTTG
CCATATTCGATTGCTACTCGTATCTCTAAGTTCGTCTAACCGTCTTTGTA
ATATATTATGTATAGATGTTATAATTTGTACTAAGGTTAAAAGACTCGAA
ACTGAATAAAACCCTTTTGTGATATTTAAAAAAAAAAAAAAAAAAAAAAA
AAAA

LP05116.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9701-RA 2080 CG9701-RA 97..2076 1..1980 9900 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16726944..16727842 427..1325 4435 99.6 Plus
chr3L 24539361 chr3L 16728434..16729089 1322..1977 3250 99.7 Plus
chr3L 24539361 chr3L 16723289..16723515 1..227 1105 99.1 Plus
chr3L 24539361 chr3L 16724137..16724338 228..429 950 98 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:49:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16737222..16738120 427..1325 4495 100 Plus
3L 28110227 3L 16738709..16739367 1322..1980 3295 100 Plus
3L 28110227 3L 16733574..16733800 1..227 1135 100 Plus
3L 28110227 3L 16734422..16734623 228..429 1010 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16730322..16731220 427..1325 4495 100 Plus
3L 28103327 3L 16731809..16732467 1322..1980 3295 100 Plus
3L 28103327 3L 16726674..16726900 1..227 1135 100 Plus
3L 28103327 3L 16727522..16727723 228..429 1010 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:34:48 has no hits.

LP05116.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:35:43 Download gff for LP05116.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16723289..16723515 1..227 99 -> Plus
chr3L 16724137..16724338 228..429 98 -> Plus
chr3L 16726947..16727840 430..1323 99 -> Plus
chr3L 16728436..16729089 1324..1977 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:36:14 Download gff for LP05116.complete
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 1..1626 187..1812 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:24:48 Download gff for LP05116.complete
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 1..1626 187..1812 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:34:51 Download gff for LP05116.complete
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 1..1626 187..1812 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:51:53 Download gff for LP05116.complete
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 1..1626 187..1812 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:44:29 Download gff for LP05116.complete
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 1..1626 187..1812 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:00:27 Download gff for LP05116.complete
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 1..1977 1..1977 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:24:48 Download gff for LP05116.complete
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 1..1977 1..1977 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:51 Download gff for LP05116.complete
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 29..2005 1..1977 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:51:53 Download gff for LP05116.complete
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 1..1977 1..1977 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:44:29 Download gff for LP05116.complete
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 29..2005 1..1977 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:35:43 Download gff for LP05116.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16733574..16733800 1..227 100 -> Plus
3L 16734422..16734623 228..429 100 -> Plus
3L 16737225..16738118 430..1323 100 -> Plus
3L 16738711..16739364 1324..1977 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:35:43 Download gff for LP05116.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16733574..16733800 1..227 100 -> Plus
3L 16734422..16734623 228..429 100 -> Plus
3L 16737225..16738118 430..1323 100 -> Plus
3L 16738711..16739364 1324..1977 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:35:43 Download gff for LP05116.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16733574..16733800 1..227 100 -> Plus
3L 16734422..16734623 228..429 100 -> Plus
3L 16737225..16738118 430..1323 100 -> Plus
3L 16738711..16739364 1324..1977 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:51 Download gff for LP05116.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16726674..16726900 1..227 100 -> Plus
arm_3L 16727522..16727723 228..429 100 -> Plus
arm_3L 16730325..16731218 430..1323 100 -> Plus
arm_3L 16731811..16732464 1324..1977 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:28:03 Download gff for LP05116.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16726674..16726900 1..227 100 -> Plus
3L 16727522..16727723 228..429 100 -> Plus
3L 16730325..16731218 430..1323 100 -> Plus
3L 16731811..16732464 1324..1977 100   Plus

LP05116.pep Sequence

Translation from 186 to 1811

> LP05116.pep
MMQIILPLFVLTASCLGSPVSQTRRFPNDFLWGVGSSSYQIEGGWNADDK
GESIWDFLTHTHPEKIVDRSNGDVSADSYHQWKRDVQMVKELHVGTYRFS
LSWPRIMPGGYMNHVSTAGIKYYSNLIDELLRYNITPMVTIYHWELPQKL
QELGGWTNPEIIPLFKDYARLVLEMYGDRVKIWTTVNEPWHVCEHGYGVD
YMAPSYNYPGIPAYLCGHNLLKAHAEVVHMYRELFQPRQGGRMGITLDTS
WPEPRDPNSAEDREASERAMQFYVGWFGHPIFSKHGNYPKVMIERIRNLS
KEQGFGARSRLPEFTTEEIHRIRGTSDFFGINSYTSNLVTSNGHNNTGKF
PVPSFNHDMGVVESQEGVDWPGSGSVWLKVYPKGMYNLLMWIHREYNAPE
IIVTENGVSDRGGLEDYARVDYYNLYLSAVLDAMEDGANISGYIAWSLMD
SYEWKAGFSEKFGLYHVDFNSPQRTRTPKISARVFAQLCKTNTIDWSYRP
KLDEEQQLVAMAQLPAEARTSGASGAVSWSLMGILLLALLR*

LP05116.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23929-PA 546 GF23929-PA 1..546 1..541 2712 91 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13575-PA 544 GG13575-PA 1..544 1..541 2869 97.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16221-PA 554 GH16221-PA 23..539 12..529 2460 85.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9701-PA 541 CG9701-PA 1..541 1..541 2943 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13367-PA 555 GI13367-PA 21..550 10..540 2472 83.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13287-PA 543 GL13287-PA 1..543 1..541 2635 88.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21974-PA 543 GA21974-PA 1..543 1..541 2632 88.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25655-PA 541 GM25655-PA 1..541 1..541 2890 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14660-PA 541 GD14660-PA 1..541 1..541 2873 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13197-PA 555 GJ13197-PA 23..525 12..515 2488 88.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16843-PA 622 GK16843-PA 14..541 17..541 2287 78.7 Plus
Dwil\GK16842-PA 494 GK16842-PA 1..486 58..540 2102 78.3 Plus
Dwil\GK16843-PA 622 GK16843-PA 533..618 2..87 307 65.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19872-PA 541 GE19872-PA 1..541 1..541 2890 98.3 Plus

LP05116.hyp Sequence

Translation from 186 to 1811

> LP05116.hyp
MMQIILPLFVLTASCLGSPVSQTRRFPNDFLWGVGSSSYQIEGGWNADDK
GESIWDFLTHTHPEKIVDRSNGDVSADSYHQWKRDVQMVKELHVGTYRFS
LSWPRIMPGGYMNHVSTAGIKYYSNLIDELLRYNITPMVTIYHWELPQKL
QELGGWTNPEIIPLFKDYARLVLEMYGDRVKIWTTVNEPWHVCEHGYGVD
YMAPSYNYPGIPAYLCGHNLLKAHAEVVHMYRELFQPRQGGRMGITLDTS
WPEPRDPNSAEDREASERAMQFYVGWFGHPIFSKHGNYPKVMIERIRNLS
KEQGFGARSRLPEFTTEEIHRIRGTSDFFGINSYTSNLVTSNGHNNTGKF
PVPSFNHDMGVVESQEGVDWPGSGSVWLKVYPKGMYNLLMWIHREYNAPE
IIVTENGVSDRGGLEDYARVDYYNLYLSAVLDAMEDGANISGYIAWSLMD
SYEWKAGFSEKFGLYHVDFNSPQRTRTPKISARVFAQLCKTNTIDWSYRP
KLDEEQQLVAMAQLPAEARTSGASGAVSWSLMGILLLALLR*

LP05116.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG9701-PA 541 CG9701-PA 1..541 1..541 2943 100 Plus