Clone LP05202 Report

Search the DGRC for LP05202

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:52
Well:2
Vector:pOT2
Associated Gene/TranscriptCG7387-RA
Protein status:LP05202.pep: gold
Preliminary Size:1646
Sequenced Size:1502

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7387 2001-01-01 Release 2 assignment
CG7387 2001-11-29 Blastp of sequenced clone
CG7387 2003-01-01 Sim4 clustering to Release 3
CG7387 2008-04-29 Release 5.5 accounting
CG7387 2008-08-15 Release 5.9 accounting
CG7387 2008-12-18 5.12 accounting

Clone Sequence Records

LP05202.complete Sequence

1502 bp (1502 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069734

> LP05202.complete
AAACAGAACCACTTAAAAATCTAGTTAGGATTTCCACTTATATAGTTAGC
ACACATAGTTGCATATTTCGTTACGCGATAAAAAATGTTTCGTTTAAAAT
TATTTCGCAGTCCTGGAGACGTATTAAGCACTTTAATTAGCGGAGCTGCA
ACGGATTGCTGCAGGAAGACGTCACATTGTTTGGAGTTGGATCGCGCTCC
CGCTGTCGCTGCCTGCTGGATCTGTATGCGGATGATCAGTCAATATCAGT
TCAGGACCACGAAACCAGCCTACTATCCAGATCGCCAGCGGGAGGCGAAG
CGAACGTCAGCGGGAGCCACGCCTCAACAGGTGTCATCTCCGGCTGTTAA
GTACCCGCAAAGCCGAGGCATGCCCAAGGACTACTACTACAAAGTGTTAG
GCGTCAACAGGCACGCCACCATCCAGCAAATCAGATCGGCTTTCTATGCG
CTGGCCAAGCGCTATCATCCCGACTCGACGCACTCGGAACAAAAGCTGAA
GCACTTCCAGGAGCTGTCCAACGCCTACAACATCCTAACCGACGAGACGA
AGCGCTTGGAGTACGATCAGCTGGGCGGGATTAAGGATGAGCGCGCTTTT
CTTGAACAGGCGGGCAATCCCCTAAATGTGGGCCTCGAGGAGGCCAAGAA
GTTCGATTCGGATAAGACGACAAATGATGAGATCAACAAACTGAAGAGCA
ACGAGTTCGATCTGCCACTTGACTTCCTTGAGGCGACAGTGGGATGCAAG
AAGCGGATAGAGCTGCGCTACTTGCGGAAATGCGAGACCTGCAAGGGCAA
GTCACAATTGATGGCGCATCGGGATGTGGGCAAGGAACCCTGTCGGCGAT
GCAATGGAACTGGAAAGGTCATGACCAAAACGCCAACCTTCTCATCGGTG
AACACATGCACGCAGTGCAAGGGCAAGCGATTCACAAATCGCAACGACTG
CGAAACATGTTCGAATCGCGGCTTCGTGGTGTCCAATGTGGATGTGATGG
TATCGGTGCCTTCCGGATCCCGGGACGGTGATGTGGTGAACATTATAAAT
CCGGAAACGAAGCAGCAGGTCACCTACCGCTTGTCGGTGCCGTCTAGCGA
CTATTTCCGACGCGTTGGCAATGACATTCTAACCGACAAGCACCTAAACA
TCTCGGAGGCCATTCTGGGCGGATCCTTTCAGATACGGGGTCTGTACGAA
AGCGTGGAGCTGCGTGTGGAGCCGGGCACCCAATCCCACACCCAGGTGGT
GCTCAATGGCAAGGGGGTGCGCTCCAGGGAGGGCGTGGGCAACCACATCG
TCACGCTGAAGGTGCGTATACCCCGGAATCTCTCCGTAAAGCAACGCCAA
CTGGTTTTGGCACTGTCCCAGGCAGAGGATCCGGTTTTCGAGCCCAAGAC
TAAGAGCACGGAGGCGGGCAATTTGAGTCACTAAAATTCTCAATGTACCG
GCCTCATTGCGTTTACAATATATTGGTAAACACGAAAAAAAAAAAAAAAA
AA

LP05202.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7387-RA 1540 CG7387-RA 54..1539 1..1486 7430 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8183482..8184287 1484..679 3925 99.1 Minus
chr3L 24539361 chr3L 8184374..8185052 679..1 3305 99.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:49:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8191520..8192327 1486..679 4040 100 Minus
3L 28110227 3L 8192414..8193092 679..1 3395 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8184620..8185427 1486..679 4040 100 Minus
3L 28103327 3L 8185514..8186192 679..1 3395 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:46:56 has no hits.

LP05202.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:47:39 Download gff for LP05202.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8183482..8184286 680..1484 99 <- Minus
chr3L 8184374..8185052 1..679 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:36:17 Download gff for LP05202.complete
Subject Subject Range Query Range Percent Splice Strand
CG7387-RA 1..1350 85..1434 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:24:51 Download gff for LP05202.complete
Subject Subject Range Query Range Percent Splice Strand
CG7387-RA 1..1350 85..1434 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:28:22 Download gff for LP05202.complete
Subject Subject Range Query Range Percent Splice Strand
CG7387-RA 1..1350 85..1434 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:51:55 Download gff for LP05202.complete
Subject Subject Range Query Range Percent Splice Strand
CG7387-RA 1..1350 85..1434 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:54:03 Download gff for LP05202.complete
Subject Subject Range Query Range Percent Splice Strand
CG7387-RA 1..1350 85..1434 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:00:31 Download gff for LP05202.complete
Subject Subject Range Query Range Percent Splice Strand
CG7387-RA 25..1508 1..1484 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:24:51 Download gff for LP05202.complete
Subject Subject Range Query Range Percent Splice Strand
CG7387-RA 25..1508 1..1484 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:22 Download gff for LP05202.complete
Subject Subject Range Query Range Percent Splice Strand
CG7387-RA 25..1508 1..1484 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:51:55 Download gff for LP05202.complete
Subject Subject Range Query Range Percent Splice Strand
CG7387-RA 25..1508 1..1484 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:03 Download gff for LP05202.complete
Subject Subject Range Query Range Percent Splice Strand
CG7387-RA 25..1508 1..1484 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:47:39 Download gff for LP05202.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8191522..8192326 680..1484 100 <- Minus
3L 8192414..8193092 1..679 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:47:39 Download gff for LP05202.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8191522..8192326 680..1484 100 <- Minus
3L 8192414..8193092 1..679 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:47:39 Download gff for LP05202.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8191522..8192326 680..1484 100 <- Minus
3L 8192414..8193092 1..679 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:22 Download gff for LP05202.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8184622..8185426 680..1484 100 <- Minus
arm_3L 8185514..8186192 1..679 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:28:06 Download gff for LP05202.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8184622..8185426 680..1484 100 <- Minus
3L 8185514..8186192 1..679 100   Minus

LP05202.pep Sequence

Translation from 84 to 1433

> LP05202.pep
MFRLKLFRSPGDVLSTLISGAATDCCRKTSHCLELDRAPAVAACWICMRM
ISQYQFRTTKPAYYPDRQREAKRTSAGATPQQVSSPAVKYPQSRGMPKDY
YYKVLGVNRHATIQQIRSAFYALAKRYHPDSTHSEQKLKHFQELSNAYNI
LTDETKRLEYDQLGGIKDERAFLEQAGNPLNVGLEEAKKFDSDKTTNDEI
NKLKSNEFDLPLDFLEATVGCKKRIELRYLRKCETCKGKSQLMAHRDVGK
EPCRRCNGTGKVMTKTPTFSSVNTCTQCKGKRFTNRNDCETCSNRGFVVS
NVDVMVSVPSGSRDGDVVNIINPETKQQVTYRLSVPSSDYFRRVGNDILT
DKHLNISEAILGGSFQIRGLYESVELRVEPGTQSHTQVVLNGKGVRSREG
VGNHIVTLKVRIPRNLSVKQRQLVLALSQAEDPVFEPKTKSTEAGNLSH*

LP05202.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24701-PA 456 GF24701-PA 1..450 1..439 1831 75.8 Plus
Dana\GF13077-PA 505 GF13077-PA 74..433 101..432 429 31.1 Plus
Dana\GF15647-PA 391 GF15647-PA 7..339 102..425 179 24.9 Plus
Dana\GF17599-PA 403 GF17599-PA 7..278 101..362 167 23.4 Plus
Dana\GF23490-PA 130 GF23490-PA 1..68 96..164 150 40.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15105-PA 450 GG15105-PA 1..449 1..448 2214 91.1 Plus
Dere\GG22881-PA 508 GG22881-PA 62..422 96..431 439 32.2 Plus
Dere\GG10228-PA 389 GG10228-PA 7..355 102..439 200 27 Plus
Dere\GG19654-PA 403 GG19654-PA 7..278 101..362 184 25.1 Plus
Dere\GG13187-PA 127 GG13187-PA 1..68 96..164 154 40.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15982-PA 412 GH15982-PA 22..406 49..436 1472 72.4 Plus
Dgri\GH21307-PA 504 GH21307-PA 67..433 90..431 478 32.5 Plus
Dgri\GH10346-PA 397 GH10346-PA 7..340 102..425 193 25 Plus
Dgri\GH15011-PA 353 GH15011-PA 1..68 96..164 157 43.5 Plus
Dgri\GH19043-PA 405 GH19043-PA 7..280 101..362 156 23.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7387-PA 449 CG7387-PA 1..449 1..449 2349 100 Plus
l(2)tid-PE 445 CG5504-PE 38..422 74..431 466 31.3 Plus
l(2)tid-PA 447 CG5504-PA 38..422 74..431 466 31.3 Plus
l(2)tid-PC 507 CG5504-PC 38..422 74..431 466 31.3 Plus
l(2)tid-PD 514 CG5504-PD 38..422 74..431 466 31.3 Plus
l(2)tid-PB 520 CG5504-PB 38..422 74..431 466 31.3 Plus
DnaJ-H-PA 389 CG9828-PA 7..354 102..438 205 26.8 Plus
DnaJ-H-PB 389 CG9828-PB 7..354 102..438 205 26.8 Plus
DnaJ-H-PC 440 CG9828-PC 7..354 102..438 205 26.8 Plus
Droj2-PE 403 CG8863-PE 7..278 101..362 189 25.1 Plus
Droj2-PD 403 CG8863-PD 7..278 101..362 189 25.1 Plus
Droj2-PC 403 CG8863-PC 7..278 101..362 189 25.1 Plus
Droj2-PB 403 CG8863-PB 7..278 101..362 189 25.1 Plus
Droj2-PA 403 CG8863-PA 7..278 101..362 189 25.1 Plus
CG2887-PA 342 CG2887-PA 1..65 96..161 156 47 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16633-PA 430 GI16633-PA 1..428 18..444 1572 68.3 Plus
Dmoj\GI19741-PA 512 GI19741-PA 75..442 90..432 477 32.4 Plus
Dmoj\Tes40-PA 380 GI21193-PA 7..349 102..449 198 25.1 Plus
Dmoj\GI13174-PA 352 GI13174-PA 1..68 96..164 161 44.9 Plus
Dmoj\GI11521-PA 505 GI11521-PA 1..74 96..168 152 42.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22564-PA 318 GL22564-PA 3..311 134..436 1022 61.8 Plus
Dper\GL16883-PA 525 GL16883-PA 78..443 93..431 449 32.6 Plus
Dper\GL13612-PA 285 GL13612-PA 30..225 49..266 429 44 Plus
Dper\GL24772-PA 392 GL24772-PA 7..328 102..415 175 26.6 Plus
Dper\GL24472-PA 404 GL24472-PA 7..279 101..362 164 23.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20316-PA 427 GA20316-PA 32..420 49..436 1243 59.4 Plus
Dpse\GA24322-PA 525 GA24322-PA 75..443 90..431 455 32.6 Plus
Dpse\GA26846-PA 286 GA26846-PA 30..226 49..266 435 44.5 Plus
Dpse\GA22062-PA 392 GA22062-PA 7..328 102..415 175 26.6 Plus
Dpse\GA21376-PA 404 GA21376-PA 7..279 101..362 164 23.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24961-PA 449 GM24961-PA 1..448 1..448 2252 96 Plus
Dsec\GM16041-PA 489 GM16041-PA 38..407 74..431 425 30.4 Plus
Dsec\GM25845-PA 389 GM25845-PA 7..355 102..439 195 27.2 Plus
Dsec\GM11309-PA 344 GM11309-PA 1..65 96..161 162 48.5 Plus
Dsec\DnaJ-1-PA 337 GM13903-PA 1..68 96..164 153 42 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13011-PA 402 GD13011-PA 1..401 48..448 2104 97.3 Plus
Dsim\GD11789-PA 505 GD11789-PA 38..422 74..431 443 31.4 Plus
Dsim\GD22085-PA 389 GD22085-PA 7..355 102..439 195 27.2 Plus
Dsim\GD18906-PA 403 GD18906-PA 7..278 101..362 175 24.1 Plus
Dsim\GD16032-PA 300 GD16032-PA 1..65 96..161 163 50 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12888-PA 441 GJ12888-PA 1..430 1..436 1562 70.1 Plus
Dvir\l(2)tid-PA 516 GJ18004-PA 71..439 90..432 454 32.6 Plus
Dvir\GJ10994-PA 393 GJ10994-PA 7..337 102..424 207 27.1 Plus
Dvir\GJ10422-PA 403 GJ10422-PA 7..278 101..362 168 23.7 Plus
Dvir\GJ11775-PA 124 GJ11775-PA 5..74 101..168 151 40 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10817-PA 456 GK10817-PA 24..443 35..436 1549 71.3 Plus
Dwil\GK23073-PA 505 GK23073-PA 59..438 71..431 434 31.4 Plus
Dwil\GK14806-PA 396 GK14806-PA 1..337 96..424 196 26 Plus
Dwil\GK13941-PA 403 GK13941-PA 7..278 101..362 170 23.7 Plus
Dwil\GK19767-PA 330 GK19767-PA 1..265 96..370 160 24.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21329-PA 450 GE21329-PA 1..449 1..448 2194 90.2 Plus
Dyak\GE14318-PA 507 GE14318-PA 38..422 74..431 439 31.1 Plus
Dyak\GE11908-PA 389 GE11908-PA 7..355 102..439 206 26.8 Plus
Dyak\GE26270-PA 403 GE26270-PA 7..278 101..362 173 24.1 Plus
Dyak\DnaJ-1-PA 351 GE20542-PA 5..85 101..179 155 35.8 Plus

LP05202.hyp Sequence

Translation from 84 to 1433

> LP05202.hyp
MFRLKLFRSPGDVLSTLISGAATDCCRKTSHCLELDRAPAVAACWICMRM
ISQYQFRTTKPAYYPDRQREAKRTSAGATPQQVSSPAVKYPQSRGMPKDY
YYKVLGVNRHATIQQIRSAFYALAKRYHPDSTHSEQKLKHFQELSNAYNI
LTDETKRLEYDQLGGIKDERAFLEQAGNPLNVGLEEAKKFDSDKTTNDEI
NKLKSNEFDLPLDFLEATVGCKKRIELRYLRKCETCKGKSQLMAHRDVGK
EPCRRCNGTGKVMTKTPTFSSVNTCTQCKGKRFTNRNDCETCSNRGFVVS
NVDVMVSVPSGSRDGDVVNIINPETKQQVTYRLSVPSSDYFRRVGNDILT
DKHLNISEAILGGSFQIRGLYESVELRVEPGTQSHTQVVLNGKGVRSREG
VGNHIVTLKVRIPRNLSVKQRQLVLALSQAEDPVFEPKTKSTEAGNLSH*

LP05202.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7387-PA 449 CG7387-PA 1..449 1..449 2349 100 Plus
l(2)tid-PE 445 CG5504-PE 38..422 74..431 466 31.3 Plus
l(2)tid-PA 447 CG5504-PA 38..422 74..431 466 31.3 Plus
l(2)tid-PC 507 CG5504-PC 38..422 74..431 466 31.3 Plus
l(2)tid-PD 514 CG5504-PD 38..422 74..431 466 31.3 Plus