Clone LP05231 Report

Search the DGRC for LP05231

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:52
Well:31
Vector:pOT2
Associated Gene/TranscriptLcp65Ad-RA
Protein status:LP05231.pep: gold
Sequenced Size:527

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6955 2002-10-15 Blastp of sequenced clone
CG6955 2003-01-01 Sim4 clustering to Release 3
Lcp65Ad 2008-04-29 Release 5.5 accounting
Lcp65Ad 2008-08-15 Release 5.9 accounting
Lcp65Ad 2008-12-18 5.12 accounting

Clone Sequence Records

LP05231.complete Sequence

527 bp (527 high quality bases) assembled on 2002-10-15

GenBank Submission: BT001515

> LP05231.complete
CACACTCCTCGAACCCATCACTTGAGTCACCCAATCCCCATCAGCCACAT
TCCAGCTGCAAAATGAAATTCACTATTGCCATCGCCTTCACCTGTATCCT
TGCCTGCTCACTGGCCGCTCCTCCAGCCATCCAGCAGGATGCTCAGGTGC
TGCGCTTCGACAGCGATGTCCTGCCCGAGGGCTACAAGTTTGCCGTGGAG
ACGAGCGACGGAAAGTCGCATCAGGAGGAAGGCCAGCTGAAGGACGTGGG
CACCGATCACGAAGCAATTGTTGTCCGCGGATCCTATGCCTATGTCGGTG
ACGATGGTCAGACCTACAGCATTCAGTACCTGGCCGATGAGAACGGCTTC
CAGCCCGAGGGTGCCCATCTGCCCAGGCCCGTTCAGTGAATCCCAGGGAA
TCCGATTGAAAGTCATTCGCCAATCAAGTTCCAATTCAGCGCAAATGTGT
TAACTATGTCTAAGTTTCGTCTGAAGAACATCATAATATTAAAGTAACAT
CATTCATTTAAAAAAAAAAAAAAAAAA

LP05231.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ad-RA 824 Lcp65Ad-RA 221..732 1..512 2560 100 Plus
Lcp65Ac-RA 593 Lcp65Ac-RA 270..481 164..375 400 79.2 Plus
Cpr65Ax1-RA 391 Cpr65Ax1-RA 265..336 303..374 195 84.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6136240..6136555 194..509 1580 100 Plus
chr3L 24539361 chr3L 6135956..6136148 1..193 905 97.9 Plus
chr3L 24539361 chr3L 6137660..6137839 196..375 330 78.9 Plus
chr3L 24539361 chr3L 6140130..6140201 374..303 195 84.7 Minus
chr3L 24539361 chr3L 6143001..6143072 374..303 195 84.7 Minus
chr3L 24539361 chr3L 6144837..6144910 375..302 190 83.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:49:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6143691..6144009 194..512 1595 100 Plus
3L 28110227 3L 6143407..6143599 1..193 965 100 Plus
3L 28110227 3L 6145111..6145290 196..375 330 78.9 Plus
3L 28110227 3L 6147581..6147652 374..303 195 84.7 Minus
3L 28110227 3L 6150452..6150523 374..303 195 84.7 Minus
3L 28110227 3L 6152286..6152359 375..302 190 83.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6136791..6137109 194..512 1595 100 Plus
3L 28103327 3L 6136507..6136699 1..193 965 100 Plus
3L 28103327 3L 6138211..6138390 196..375 330 78.8 Plus
3L 28103327 3L 6143552..6143623 374..303 195 84.7 Minus
3L 28103327 3L 6140681..6140752 374..303 195 84.7 Minus
3L 28103327 3L 6145386..6145459 375..302 190 83.7 Minus
3L 28103327 3L 6142942..6142989 327..374 150 87.5 Plus
3L 28103327 3L 6140071..6140118 327..374 150 87.5 Plus
Blast to na_te.dros performed 2019-03-15 13:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 4202..4289 491..398 104 61.7 Minus

LP05231.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:58:08 Download gff for LP05231.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6135956..6136148 1..193 97 -> Plus
chr3L 6136240..6136555 194..509 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:36:20 Download gff for LP05231.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 1..327 63..389 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:40:24 Download gff for LP05231.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 1..327 63..389 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:18:26 Download gff for LP05231.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 1..327 63..389 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:16:02 Download gff for LP05231.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 1..327 63..389 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:46:25 Download gff for LP05231.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 1..327 63..389 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:13:10 Download gff for LP05231.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 1..509 1..509 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:40:24 Download gff for LP05231.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 1..509 1..509 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:18:26 Download gff for LP05231.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 13..521 1..509 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:16:02 Download gff for LP05231.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 1..509 1..509 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:46:25 Download gff for LP05231.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 13..521 1..509 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:58:08 Download gff for LP05231.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6143407..6143599 1..193 100 -> Plus
3L 6143691..6144006 194..509 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:58:08 Download gff for LP05231.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6143407..6143599 1..193 100 -> Plus
3L 6143691..6144006 194..509 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:58:08 Download gff for LP05231.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6143407..6143599 1..193 100 -> Plus
3L 6143691..6144006 194..509 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:18:26 Download gff for LP05231.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6136507..6136699 1..193 100 -> Plus
arm_3L 6136791..6137106 194..509 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:02:54 Download gff for LP05231.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6136791..6137106 194..509 100   Plus
3L 6136507..6136699 1..193 100 -> Plus

LP05231.hyp Sequence

Translation from 2 to 388

> LP05231.hyp
HSSNPSLESPNPHQPHSSCKMKFTIAIAFTCILACSLAAPPAIQQDAQVL
RFDSDVLPEGYKFAVETSDGKSHQEEGQLKDVGTDHEAIVVRGSYAYVGD
DGQTYSIQYLADENGFQPEGAHLPRPVQ*

LP05231.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ad-PB 108 CG6955-PB 1..108 21..128 564 100 Plus
Lcp65Ad-PA 108 CG6955-PA 1..108 21..128 564 100 Plus
Lcp65Ac-PA 109 CG6956-PA 1..103 21..124 382 69.2 Plus
Lcp65Ag3-PA 105 CG18779-PA 1..100 21..124 290 54.8 Plus
Lcp65Ag1-PA 105 CG10530-PA 1..100 21..124 287 53.8 Plus

LP05231.pep Sequence

Translation from 62 to 388

> LP05231.pep
MKFTIAIAFTCILACSLAAPPAIQQDAQVLRFDSDVLPEGYKFAVETSDG
KSHQEEGQLKDVGTDHEAIVVRGSYAYVGDDGQTYSIQYLADENGFQPEG
AHLPRPVQ*

LP05231.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23520-PA 108 GF23520-PA 1..108 1..108 453 87 Plus
Dana\GF23521-PA 109 GF23521-PA 27..104 28..105 332 74.4 Plus
Dana\GF10921-PA 101 GF10921-PA 1..96 1..104 301 52.9 Plus
Dana\GF23526-PA 115 GF23526-PA 11..110 1..104 289 55.8 Plus
Dana\GF10923-PA 105 GF10923-PA 24..100 28..104 279 61 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15325-PA 108 GG15325-PA 1..108 1..108 548 94.4 Plus
Dere\GG15326-PA 109 GG15326-PA 1..104 1..105 347 67.6 Plus
Dere\GG14079-PA 106 GG14079-PA 26..101 29..104 312 71.1 Plus
Dere\GG14083-PA 105 GG14083-PA 1..100 1..104 280 52.9 Plus
Dere\GG14086-PA 102 GG14086-PA 1..99 1..104 280 52.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15835-PA 114 GH15835-PA 1..114 1..108 379 64.9 Plus
Dgri\GH15836-PA 110 GH15836-PA 1..104 1..104 332 57.7 Plus
Dgri\GH15651-PA 99 GH15651-PA 1..97 1..104 303 57.7 Plus
Dgri\GH15650-PA 101 GH15650-PA 1..98 1..105 299 54.3 Plus
Dgri\GH13967-PA 99 GH13967-PA 1..98 1..105 298 55.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ad-PB 108 CG6955-PB 1..108 1..108 564 100 Plus
Lcp65Ad-PA 108 CG6955-PA 1..108 1..108 564 100 Plus
Lcp65Ac-PA 109 CG6956-PA 1..103 1..104 382 69.2 Plus
Lcp65Ag3-PA 105 CG18779-PA 1..100 1..104 290 54.8 Plus
Lcp65Ag2-PA 105 CG10534-PA 1..100 1..104 287 53.8 Plus
Lcp65Ag1-PA 105 CG10530-PA 1..100 1..104 287 53.8 Plus
Cpr65Ax2-PB 102 CG18777-PB 1..97 1..104 277 56.7 Plus
Cpr65Ax2-PA 102 CG18777-PA 1..97 1..104 277 56.7 Plus
Cpr65Ax1-PA 102 CG34270-PA 1..97 1..104 277 56.7 Plus
Lcp65Af-PA 100 CG10533-PA 1..95 1..104 274 53.8 Plus
Lcp65Ae-PA 99 CG10529-PA 1..96 1..104 270 51 Plus
Cpr65Av-PA 111 CG32405-PA 9..109 5..104 263 50.5 Plus
Acp65Aa-PA 105 CG10297-PA 2..105 1..105 247 47.2 Plus
Lcp65Aa-PA 102 CG7287-PA 1..100 1..104 234 43.3 Plus
Lcp65Ab1-PA 104 CG32400-PA 1..99 1..104 227 48.6 Plus
Lcp65Ab2-PA 104 CG18773-PA 1..99 1..104 227 48.6 Plus
Cpr65Aw-PA 117 CG32404-PA 4..105 5..105 223 45.1 Plus
Cpr47Ea-PA 135 CG9079-PA 40..121 26..106 199 47.6 Plus
Cpr49Aa-PB 144 CG30045-PB 1..111 1..106 194 38.7 Plus
Cpr49Ae-PA 134 CG8505-PA 4..111 3..106 185 35.2 Plus
Cpr65Aw-PB 86 CG32404-PB 15..74 46..105 177 56.7 Plus
Cpr65Az-PA 239 CG12330-PA 112..195 25..106 174 41.7 Plus
Cpr49Af-PB 126 CG8510-PB 1..100 1..106 172 35.8 Plus
Cpr49Af-PA 126 CG8510-PA 1..100 1..106 172 35.8 Plus
Cpr47Ef-PD 601 CG13214-PD 126..214 19..106 172 41.6 Plus
Cpr47Ef-PC 612 CG13214-PC 126..214 19..106 172 41.6 Plus
Cpr47Eb-PA 214 CG13224-PA 2..114 3..107 167 33.6 Plus
Cpr11B-PB 195 CG2555-PB 67..147 24..104 166 41.5 Plus
Cpr11B-PA 197 CG2555-PA 67..147 24..104 166 41.5 Plus
Cpr67Fa1-PA 134 CG7941-PA 2..99 3..106 164 36.8 Plus
Cpr67Fa2-PA 134 CG18349-PA 2..99 3..106 163 35.8 Plus
Cpr47Ec-PA 131 CG9077-PA 13..103 12..101 162 39.6 Plus
Cpr49Ab-PA 259 CG30042-PA 161..235 29..104 158 39.5 Plus
Cpr47Eg-PA 117 CG9070-PA 1..94 1..106 154 38.7 Plus
Edg78E-PB 122 CG7673-PB 7..95 11..106 148 37.8 Plus
Edg78E-PA 122 CG7673-PA 7..95 11..106 148 37.8 Plus
Cpr65Au-PB 106 CG18778-PB 5..101 3..99 146 34.7 Plus
Cpr65Au-PA 106 CG18778-PA 5..101 3..99 146 34.7 Plus
Cpr49Ah-PA 190 CG8515-PA 53..132 29..106 146 36.2 Plus
Cpr78Cc-PA 119 CG7658-PA 7..96 11..104 143 39.6 Plus
Cpr67Fb-PA 122 CG18348-PA 5..96 6..106 138 33.3 Plus
Cpr65Ec-PA 127 CG8634-PA 5..98 3..106 138 36.2 Plus
Pcp-PA 184 CG3440-PA 5..101 1..105 136 32.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12617-PA 110 GI12617-PA 1..110 1..108 331 62.2 Plus
Dmoj\GI12627-PA 112 GI12627-PA 1..107 1..104 322 58.9 Plus
Dmoj\GI12618-PA 110 GI12618-PA 1..105 1..105 316 61 Plus
Dmoj\GI12628-PA 104 GI12628-PA 1..102 1..104 301 54.8 Plus
Dmoj\GI12620-PA 104 GI12620-PA 4..103 6..105 271 48 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15556-PA 108 GL15556-PA 1..108 1..108 410 81.5 Plus
Dper\GL15557-PA 109 GL15557-PA 27..104 28..105 337 75.6 Plus
Dper\GL15559-PA 101 GL15559-PA 19..99 24..104 301 64.2 Plus
Dper\GL15521-PA 102 GL15521-PA 1..99 1..104 286 55.8 Plus
Dper\GL15558-PA 104 GL15558-PA 21..99 26..104 273 64.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19981-PA 108 GA19981-PA 1..108 1..108 410 81.5 Plus
Dpse\GA19982-PA 109 GA19982-PA 27..104 28..105 337 75.6 Plus
Dpse\GA23849-PA 101 GA23849-PA 19..99 24..104 298 63 Plus
Dpse\GA23448-PA 101 GA23448-PA 19..99 24..104 297 63 Plus
Dpse\GA15076-PA 104 GA15076-PA 21..99 26..104 273 64.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14759-PA 108 GM14759-PA 1..108 1..108 565 98.1 Plus
Dsec\GM11071-PA 115 GM11071-PA 1..107 1..107 482 95.3 Plus
Dsec\GM14760-PA 109 GM14760-PA 20..104 21..105 336 70.6 Plus
Dsec\GM19678-PA 109 GM19678-PA 20..104 21..105 336 70.6 Plus
Dsec\GM13864-PA 111 GM13864-PA 7..110 3..105 274 51 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13938-PA 108 GD13938-PA 1..108 1..108 565 99.1 Plus
Dsim\GD13939-PA 107 GD13939-PA 1..102 1..105 340 65.7 Plus
Dsim\GD13147-PA 111 GD13147-PA 7..110 3..105 274 51 Plus
Dsim\GD14953-PA 101 GD14953-PA 1..96 1..104 273 51 Plus
Dsim\GD13145-PA 98 GD13145-PA 1..98 1..107 263 50.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12738-PA 110 GJ12738-PA 1..110 1..108 404 72.3 Plus
Dvir\GJ12740-PA 110 GJ12740-PA 1..105 1..105 315 60 Plus
Dvir\GJ12742-PA 102 GJ12742-PA 4..101 6..105 302 58.4 Plus
Dvir\GJ12680-PA 105 GJ12680-PA 1..100 1..104 300 59.6 Plus
Dvir\GJ12681-PA 105 GJ12681-PA 1..100 1..104 300 59.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17269-PA 108 GK17269-PA 1..103 1..105 420 72.4 Plus
Dwil\GK17266-PA 115 GK17266-PA 14..115 5..108 413 74 Plus
Dwil\GK16921-PA 105 GK16921-PA 1..100 1..104 312 58.7 Plus
Dwil\GK16918-PA 105 GK16918-PA 1..105 1..107 304 55.1 Plus
Dwil\GK16916-PA 101 GK16916-PA 1..99 1..104 297 52.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21543-PA 108 GE21543-PA 1..108 1..108 494 95.4 Plus
Dyak\GE20507-PA 111 GE20507-PA 9..110 5..105 261 50 Plus
Dyak\GE20502-PA 195 GE20502-PA 2..107 1..107 260 47.2 Plus
Dyak\GE20504-PA 104 GE20504-PA 1..99 1..104 243 49.5 Plus
Dyak\GE21545-PA 104 GE21545-PA 1..99 1..104 241 48.6 Plus
Dyak\GE20502-PA 195 GE20502-PA 130..193 41..104 183 55.4 Plus