Clone LP05266 Report

Search the DGRC for LP05266

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:52
Well:66
Vector:pOT2
Associated Gene/TranscriptCG14717-RA
Protein status:LP05266.pep: gold
Preliminary Size:1044
Sequenced Size:1128

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14717 2002-01-01 Sim4 clustering to Release 2
CG14717 2002-05-18 Blastp of sequenced clone
CG14717 2003-01-01 Sim4 clustering to Release 3
CG14717 2008-04-29 Release 5.5 accounting
CG14717 2008-08-15 Release 5.9 accounting
CG14717 2008-12-18 5.12 accounting

Clone Sequence Records

LP05266.complete Sequence

1128 bp (1128 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119027

> LP05266.complete
AAACCCAGCTTTTAATGTAGTTCCCTGCAGAACTGACAGCTATTCTAAAT
TTTCGGAAACCATGGCAAGACAGCGACTTCTCGGCTCGATCCTTTCCAAA
GGCGGAGCCCAAGTGCTGCGAAACTTCCAGTCATTTGTCCAGGGCACTCG
TTTGGAGTATGTCTCCTACACCTCGCCGCGCAATCAGATGCAGGCGCCAC
CAATTGTGGTGATGCACGACCTCAATCTGTCACTGGAATCCTGGCGCCAG
GTAGCTGTTAACCTCAGTCAGGTTGGATTGCGCCAGGTGATCACCGTGGA
TGCTCGGAATCATGGCCTTAGTCCTTACATAACCGGGCATTCGCCAATGC
ACCTGGCCGCCGACGTGGAGGCCCTGATGAGCCACCAGAGACTGAACAAG
ATCGTTGCACTTGGACATGGAATGGGCGGTCGGGCAATGATGACACTGGC
ACTCACTCAGCCGCAACTCGTCGAGCGGGTCATACTGGTGGACATCACAC
CAGCACCGGTGCCCAGTAACTTCTATCTCACTCGGCAGGTGTTCGAGATG
ATGCTCCAGGTGGCGCCCAGTATTCCCTCAAATCTATCACTTTCCGAGGG
GCGTACGTTCATCCTGCCACTGTTCCAGGATGTGGTCCACGACGCCTCCG
AGCTGCGTCGCATTATTTACAATCTGCGCAAGATGCAGGACAACACCTTT
GGCTGGGCAGTTAATCCCCAGGCGGTCCTAAGCTCCTGGGGGGAGATGAT
GATCAATTACGAGGCCACTTTGGGCGGACTGCGTCCCTACATGGGCGAAG
TCTTGCTCATAGCCGGTTCCCAGTCGGAATTCGTGACCACGACCAGTATT
GCCGTGATGCAGAGATACTTTCCAAATACAGTGGTACAGATTCTGGATGC
TGGACACTGTGTGTATGAGGATCAGCCGGAACAATTTGTTGAACTAGTCG
TGGAGTTTACTCAAACATGCTTAGTATGTTGAAGAAACACCTATTTGGTT
ATCGTTTAAAGTGACTTTTATATAAAATTGGCATTGCTATATTGGCTGAT
ATTTCAGCACTCAATATACTCCACCGATAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA

LP05266.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14717-RA 1154 CG14717-RA 77..1154 1..1078 5390 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7522114..7523191 1..1078 5315 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:50:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11696585..11697664 1..1080 5400 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11437416..11438495 1..1080 5400 100 Plus
Blast to na_te.dros performed on 2019-03-15 13:57:15 has no hits.

LP05266.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:58:10 Download gff for LP05266.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7522114..7523191 1..1078 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:36:26 Download gff for LP05266.complete
Subject Subject Range Query Range Percent Splice Strand
CG14717-RA 1..921 62..982 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:43:02 Download gff for LP05266.complete
Subject Subject Range Query Range Percent Splice Strand
CG14717-RA 1..921 62..982 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:18:31 Download gff for LP05266.complete
Subject Subject Range Query Range Percent Splice Strand
CG14717-RA 1..921 62..982 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:35:12 Download gff for LP05266.complete
Subject Subject Range Query Range Percent Splice Strand
CG14717-RA 1..921 62..982 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:46:29 Download gff for LP05266.complete
Subject Subject Range Query Range Percent Splice Strand
CG14717-RA 1..921 62..982 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:17:27 Download gff for LP05266.complete
Subject Subject Range Query Range Percent Splice Strand
CG14717-RA 77..1154 1..1078 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:43:02 Download gff for LP05266.complete
Subject Subject Range Query Range Percent Splice Strand
CG14717-RA 77..1154 1..1078 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:18:31 Download gff for LP05266.complete
Subject Subject Range Query Range Percent Splice Strand
CG14717-RA 77..1154 1..1078 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:35:12 Download gff for LP05266.complete
Subject Subject Range Query Range Percent Splice Strand
CG14717-RA 77..1154 1..1078 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:46:29 Download gff for LP05266.complete
Subject Subject Range Query Range Percent Splice Strand
CG14717-RA 77..1154 1..1078 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:58:10 Download gff for LP05266.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11696585..11697662 1..1078 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:58:10 Download gff for LP05266.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11696585..11697662 1..1078 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:58:10 Download gff for LP05266.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11696585..11697662 1..1078 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:18:31 Download gff for LP05266.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7522307..7523384 1..1078 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:07:32 Download gff for LP05266.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11437416..11438493 1..1078 100   Plus

LP05266.hyp Sequence

Translation from 0 to 981

> LP05266.hyp
NPAFNVVPCRTDSYSKFSETMARQRLLGSILSKGGAQVLRNFQSFVQGTR
LEYVSYTSPRNQMQAPPIVVMHDLNLSLESWRQVAVNLSQVGLRQVITVD
ARNHGLSPYITGHSPMHLAADVEALMSHQRLNKIVALGHGMGGRAMMTLA
LTQPQLVERVILVDITPAPVPSNFYLTRQVFEMMLQVAPSIPSNLSLSEG
RTFILPLFQDVVHDASELRRIIYNLRKMQDNTFGWAVNPQAVLSSWGEMM
INYEATLGGLRPYMGEVLLIAGSQSEFVTTTSIAVMQRYFPNTVVQILDA
GHCVYEDQPEQFVELVVEFTQTCLVC*

LP05266.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14717-PB 306 CG14717-PB 1..306 21..326 1562 100 Plus
CG14717-PA 306 CG14717-PA 1..306 21..326 1562 100 Plus
CG2059-PB 308 CG2059-PB 39..303 51..319 379 33.7 Plus
CG2059-PA 308 CG2059-PA 39..303 51..319 379 33.7 Plus

LP05266.pep Sequence

Translation from 61 to 981

> LP05266.pep
MARQRLLGSILSKGGAQVLRNFQSFVQGTRLEYVSYTSPRNQMQAPPIVV
MHDLNLSLESWRQVAVNLSQVGLRQVITVDARNHGLSPYITGHSPMHLAA
DVEALMSHQRLNKIVALGHGMGGRAMMTLALTQPQLVERVILVDITPAPV
PSNFYLTRQVFEMMLQVAPSIPSNLSLSEGRTFILPLFQDVVHDASELRR
IIYNLRKMQDNTFGWAVNPQAVLSSWGEMMINYEATLGGLRPYMGEVLLI
AGSQSEFVTTTSIAVMQRYFPNTVVQILDAGHCVYEDQPEQFVELVVEFT
QTCLVC*

LP05266.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18391-PA 297 GF18391-PA 19..297 23..301 839 53.4 Plus
Dana\GF19711-PA 306 GF19711-PA 7..302 6..299 415 33.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18366-PA 307 GG18366-PA 1..307 1..306 1535 94.5 Plus
Dere\GG19637-PA 312 GG19637-PA 52..307 41..299 382 33.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18268-PA 325 GH18268-PA 47..323 30..306 766 49.8 Plus
Dgri\GH24258-PA 324 GH24258-PA 41..320 17..299 431 32.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG14717-PB 306 CG14717-PB 1..306 1..306 1562 100 Plus
CG14717-PA 306 CG14717-PA 1..306 1..306 1562 100 Plus
CG2059-PB 308 CG2059-PB 39..303 31..299 379 33.7 Plus
CG2059-PA 308 CG2059-PA 39..303 31..299 379 33.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24075-PA 298 GI24075-PA 19..295 30..306 766 48.4 Plus
Dmoj\GI15943-PA 317 GI15943-PA 33..313 15..299 422 33.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14693-PA 319 GL14693-PA 61..311 47..299 409 34.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15213-PA 319 GA15213-PA 61..311 47..299 409 34.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23971-PA 306 GM23971-PA 1..306 1..306 1594 98 Plus
Dsec\GM17512-PA 308 GM17512-PA 39..303 31..299 400 34.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18776-PA 306 GD18776-PA 1..306 1..306 1591 97.7 Plus
Dsim\GD24762-PA 190 GD24762-PA 29..185 140..299 205 33.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10894-PA 278 GJ10894-PA 1..276 31..306 824 52.5 Plus
Dvir\GJ14849-PA 322 GJ14849-PA 53..318 31..299 408 34.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16216-PA 313 GK16216-PA 48..309 36..299 449 37.1 Plus
Dwil\GK19111-PA 308 GK19111-PA 48..298 48..299 436 38.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24195-PA 307 GE24195-PA 1..307 1..306 1530 93.8 Plus
Dyak\GE15707-PA 280 GE15707-PA 25..275 46..299 382 32.9 Plus