Clone LP05719 Report

Search the DGRC for LP05719

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:57
Well:19
Vector:pOT2
Associated Gene/TranscriptCG12309-RA
Protein status:LP05719.pep: gold
Preliminary Size:2276
Sequenced Size:2021

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12309 2002-01-01 Sim4 clustering to Release 2
CG12309 2002-05-18 Blastp of sequenced clone
CG12309 2003-01-01 Sim4 clustering to Release 3
CG12309 2008-04-29 Release 5.5 accounting
CG12309 2008-08-15 Release 5.9 accounting
CG12309 2008-12-18 5.12 accounting

Clone Sequence Records

LP05719.complete Sequence

2021 bp (2021 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119033

> LP05719.complete
CCTTTAAGAACTCAGTCACATAAACACATTCTCAAAACGTACAGTCATAA
AACTACGAAGCGGAAAGTTTTGTAAAATAACTTGGAAATCTAAAAGGAGT
TGAGCATTTTGTTTCCGCGTTTTTGTTTGGACATTTCTGCACTTGCAGAT
TCTTTTTATCCCATAACTGGCTTTCTAATGCAAGTCCGCGTCTACTAAAA
GGCAACATGTTTGATACCGCATTGGGAACAGTATTGAGCGTTATGGTGCA
GTTGATAATCCTAGTATTTGGTCAGATTCTGGGACAAGTGGTCCAGCATC
CATTGATTACTACTGGACTTTGCCTGTTGGGAGCATTTGCATACCACGCG
GATCAGGAAACACTCAAGGAGATATATCAGCGTGTACTCCTTTTGATTAG
GACTCCACTTCAATTTGGGAACACATCTTGCTCAAGAAATTCTGCTCCAG
TATACGGTTACGACATGCAACATGGTCCGCATACTTGGTTGCCGAAGTCC
AGGTCATCTTCCAGTTCTGTGGAGGAAGCGACTTTCTTCCAGAGCCCAGT
CAACATCGATGAATCTCAAATTCAACGCATGGCCATAAGAGAGCTGCTGA
GCTGGAACCACTATGATGATCTGCCCGCCAGCATCACTCTGGAGAATACG
GGTCAGACACTTATCCTCCGTGCCCAGTTCCACGGTAATGCACCTACTAT
CAGTGGAGCTGATCTCCTGGCCAGCTATACGTTTCTGGAACTGCGCTTCC
ACTGGGGCTGGTGCAACAGCGAGGGATCCGAGCATACGATCAACCACCGA
AAGTTCCCACTTGAGATGCAGGTGATGCACAAAACGGGATCGGGTATTCC
CCGTACTTGCACCAGCAGCTATGATCTCCTGATGATCGGATACGTCTTTG
AGCTATCCGCGCACAATCCGTTCCTGGATCCCCTGGTGCAGAATTTGCGA
TTGGTTCAGAAGCCTGGAAAGCGTGTCCAGATTTCTCCATTTCCCATATC
CTACTTGATGTATCAATTTCGATCTGGATTCTATTCCTACGGCGGTTCGC
TGACCCATCCGCCCTGTTACCAGGGCACCGAATGGTTCATCTTTCCCGAA
TCCCTAGCCATTAGCGACTTTCAGCTGCGTCACTTTCGTTTGCTCCTAGG
TCCGGATGGGATCTCGCCCATAGCCCGTAACAGCCGACCAGTCCAGCACA
TGGGCAATCGAGTTGTAAGCCTAAACTGCTTCTGCCCATACGATGCCGCC
CAGTTGTCCAGAATGCATGTGGAGCTATGCCAGGCTCAAGCTCAGGAGGA
GCACGAAGAGGAACGTATCGAGCAGGAGCAGCAATTGGAACTAGAGCGCG
AACTGGAGCGGCAAAGGGAAAGCGACTTGAAAGCTCAGCAGGAGCAAGCA
AGCGAGGCGGCCATCGCTGCTTCCGAGGATGAAGGTCAGCTAATTGAGAC
CATAGATACCACGACCATAATAACTAGTAGCAGCAACACTAGCATATGCA
TGACTACGCTGATGCGGAAGGATTCGCCTAGGCAACTGGAACAGCCATCT
CAGATGCCTATGATGGCTCCCAATCAGGGTAACTTTTGCAATCCTGGCAT
TGTGATATTCAGCGGTGTCAATGAATCCAAGTCCAAGTGCGGCATCCATC
AGGATACACCGGAGGAGCTAATGATCCATAACAGAGGAACGGGAAGAAAC
ATGGGTGTACAGAATGGCTGCAAGGCCGATGCCTTTTGCGGCGTGGGCGA
TGGCGTCAACATCGGAATTCGCATGGAGCTGGTCGAGTAGCTAATGTGCT
ATTATCAACCTTTATGTCATCCATAGACACTCCATTTGTGGTCCATGCTG
CACGAAGAACCGGTGGGGCTAGATGGTGCACATGAAACACCGGTCAAGGC
CAACTGGTGGCCAACCGGAGTTCTCTCTGTGCCCGGAAGTGATTGAATCG
CGTGCGTGTGGATTAAACAAGTTGCGTTTATATTTTCTAAAGCATAACCC
CCCAAAAAAAAAAAAAAAAAA

LP05719.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12309-RA 2009 CG12309-RA 1..2005 1..2005 10025 100 Plus
CG12309.a 1960 CG12309.a 1..1434 1..1434 7170 100 Plus
CG12309.b 1951 CG12309.b 1..1434 1..1434 7170 100 Plus
CG12309.a 1960 CG12309.a 1433..1956 1482..2005 2620 100 Plus
CG12309.b 1951 CG12309.b 1433..1947 1491..2005 2575 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 6612823..6614825 1..2003 10015 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:50:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10725270..10727274 1..2005 10025 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 10726469..10728473 1..2005 10025 100 Plus
Blast to na_te.dros performed on 2019-03-16 02:12:49 has no hits.

LP05719.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:13:28 Download gff for LP05719.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 6612823..6614825 1..2003 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:36:50 Download gff for LP05719.complete
Subject Subject Range Query Range Percent Splice Strand
CG12309-RA 1..1584 207..1790 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:42:47 Download gff for LP05719.complete
Subject Subject Range Query Range Percent Splice Strand
CG12309-RA 1..1584 207..1790 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:11:47 Download gff for LP05719.complete
Subject Subject Range Query Range Percent Splice Strand
CG12309-RA 1..1584 207..1790 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:34:57 Download gff for LP05719.complete
Subject Subject Range Query Range Percent Splice Strand
CG12309-RA 1..1584 207..1790 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:01:51 Download gff for LP05719.complete
Subject Subject Range Query Range Percent Splice Strand
CG12309-RA 1..1584 207..1790 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:17:13 Download gff for LP05719.complete
Subject Subject Range Query Range Percent Splice Strand
CG12309-RA 1..2003 1..2003 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:42:47 Download gff for LP05719.complete
Subject Subject Range Query Range Percent Splice Strand
CG12309-RA 1..2003 1..2003 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:11:47 Download gff for LP05719.complete
Subject Subject Range Query Range Percent Splice Strand
CG12309-RA 1..2003 1..2003 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:34:57 Download gff for LP05719.complete
Subject Subject Range Query Range Percent Splice Strand
CG12309-RA 1..2003 1..2003 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:01:51 Download gff for LP05719.complete
Subject Subject Range Query Range Percent Splice Strand
CG12309-RA 1..2003 1..2003 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:13:28 Download gff for LP05719.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10725270..10727272 1..2003 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:13:28 Download gff for LP05719.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10725270..10727272 1..2003 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:13:28 Download gff for LP05719.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10725270..10727272 1..2003 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:11:47 Download gff for LP05719.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6612775..6614777 1..2003 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:07:15 Download gff for LP05719.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10726469..10728471 1..2003 100   Plus

LP05719.pep Sequence

Translation from 206 to 1789

> LP05719.pep
MFDTALGTVLSVMVQLIILVFGQILGQVVQHPLITTGLCLLGAFAYHADQ
ETLKEIYQRVLLLIRTPLQFGNTSCSRNSAPVYGYDMQHGPHTWLPKSRS
SSSSVEEATFFQSPVNIDESQIQRMAIRELLSWNHYDDLPASITLENTGQ
TLILRAQFHGNAPTISGADLLASYTFLELRFHWGWCNSEGSEHTINHRKF
PLEMQVMHKTGSGIPRTCTSSYDLLMIGYVFELSAHNPFLDPLVQNLRLV
QKPGKRVQISPFPISYLMYQFRSGFYSYGGSLTHPPCYQGTEWFIFPESL
AISDFQLRHFRLLLGPDGISPIARNSRPVQHMGNRVVSLNCFCPYDAAQL
SRMHVELCQAQAQEEHEEERIEQEQQLELERELERQRESDLKAQQEQASE
AAIAASEDEGQLIETIDTTTIITSSSNTSICMTTLMRKDSPRQLEQPSQM
PMMAPNQGNFCNPGIVIFSGVNESKSKCGIHQDTPEELMIHNRGTGRNMG
VQNGCKADAFCGVGDGVNIGIRMELVE*

LP05719.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13773-PA 534 GF13773-PA 1..534 1..527 1738 68.8 Plus
Dana\GF12206-PA 365 GF12206-PA 98..359 65..340 630 47.5 Plus
Dana\GF12202-PA 258 GF12202-PA 23..254 95..337 291 32.3 Plus
Dana\GF24807-PA 329 GF24807-PA 32..289 83..340 253 26.2 Plus
Dana\GF24805-PA 336 GF24805-PA 27..284 83..340 253 27.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20144-PA 524 GG20144-PA 1..524 1..527 2277 87.5 Plus
Dere\GG22066-PA 340 GG22066-PA 83..336 76..342 661 49.8 Plus
Dere\GG22062-PA 295 GG22062-PA 74..294 113..340 344 35.2 Plus
Dere\GG15564-PA 335 GG15564-PA 28..285 83..340 256 26.2 Plus
Dere\GG12140-PA 311 GG12140-PA 47..283 112..337 222 28.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21268-PA 492 GH21268-PA 1..490 1..523 1323 52.5 Plus
Dgri\GH24208-PA 480 GH24208-PA 1..478 1..523 1304 52.1 Plus
Dgri\GH22005-PA 306 GH22005-PA 51..305 75..340 623 47.2 Plus
Dgri\GH16154-PA 337 GH16154-PA 19..278 79..340 282 29 Plus
Dgri\GH22001-PA 248 GH22001-PA 28..226 113..318 250 30.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12309-PA 527 CG12309-PA 1..527 1..527 2772 100 Plus
CG9235-PA 332 CG9235-PA 68..326 71..340 655 49.3 Plus
CG15227-PB 295 CG15227-PB 74..294 113..340 328 33.5 Plus
CAH2-PA 335 CG6906-PA 28..285 83..340 254 25.8 Plus
CG5379-PB 303 CG5379-PB 6..301 53..371 238 25.7 Plus
CG5379-PA 303 CG5379-PA 6..301 53..371 238 25.7 Plus
caix-PA 311 CG6074-PA 47..281 112..335 212 28 Plus
CAH2-PB 253 CG6906-PB 1..203 145..340 201 25.9 Plus
CG18673-PC 302 CG18673-PC 62..296 112..337 200 26.5 Plus
CG18672-PD 281 CG18672-PD 45..274 112..337 199 25.5 Plus
CG1402-PC 333 CG1402-PC 86..298 135..340 191 30.1 Plus
CG1402-PB 333 CG1402-PB 86..298 135..340 191 30.1 Plus
CG3669-PB 298 CG3669-PB 49..283 112..337 183 25.4 Plus
CG11284-PE 250 CG11284-PE 4..230 112..330 181 23.3 Plus
CG11284-PD 250 CG11284-PD 4..230 112..330 181 23.3 Plus
CG11284-PC 250 CG11284-PC 4..230 112..330 181 23.3 Plus
CG11284-PB 250 CG11284-PB 4..230 112..330 181 23.3 Plus
CG11284-PA 250 CG11284-PA 4..230 112..330 181 23.3 Plus
CG32698-PD 327 CG32698-PD 57..296 112..340 163 25.8 Plus
CG32698-PB 327 CG32698-PB 57..296 112..340 163 25.8 Plus
CG32698-PC 327 CG32698-PC 57..296 112..340 163 25.8 Plus
CG32698-PA 327 CG32698-PA 57..296 112..340 163 25.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19344-PA 542 GI19344-PA 1..430 1..437 1259 58.9 Plus
Dmoj\GI19709-PA 330 GI19709-PA 77..329 81..346 610 47.9 Plus
Dmoj\GI19704-PA 290 GI19704-PA 71..290 113..342 327 33.5 Plus
Dmoj\GI12426-PA 330 GI12426-PA 25..280 83..340 314 29.8 Plus
Dmoj\GI23614-PA 278 GI23614-PA 26..265 107..337 230 28.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17304-PA 474 GL17304-PA 1..474 1..527 1307 51.7 Plus
Dper\GL17059-PA 345 GL17059-PA 85..341 73..342 545 41 Plus
Dper\GL17054-PA 295 GL17054-PA 73..295 113..342 341 35.3 Plus
Dper\GL25159-PA 335 GL25159-PA 27..289 83..344 237 27.1 Plus
Dper\GL23614-PA 305 GL23614-PA 99..277 163..337 198 31.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11547-PA 474 GA11547-PA 1..474 1..527 1315 51.9 Plus
Dpse\GA21631-PA 345 GA21631-PA 85..341 73..342 545 41 Plus
Dpse\GA13586-PA 295 GA13586-PA 73..295 113..342 341 35.6 Plus
Dpse\GA19947-PA 335 GA19947-PA 27..289 83..344 232 26.7 Plus
Dpse\GA19339-PA 311 GA19339-PA 47..283 112..337 203 28.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21232-PA 299 GM21232-PA 1..283 1..286 1447 94.1 Plus
Dsec\GM15783-PA 332 GM15783-PA 71..326 72..340 648 48.7 Plus
Dsec\GM21233-PA 159 GM21233-PA 1..159 369..527 628 92.5 Plus
Dsec\GM25332-PA 335 GM25332-PA 28..285 83..340 262 26.5 Plus
Dsec\GM10133-PA 311 GM10133-PA 47..283 112..337 215 28.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10752-PA 527 GD10752-PA 1..527 1..527 2591 95.8 Plus
Dsim\GD11546-PA 332 GD11546-PA 71..326 72..340 642 48.3 Plus
Dsim\GD11542-PA 295 GD11542-PA 74..294 113..340 301 33.5 Plus
Dsim\GD14364-PA 335 GD14364-PA 28..285 83..340 259 26.5 Plus
Dsim\GD18465-PA 303 GD18465-PA 5..283 52..337 230 26.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22223-PA 576 GJ22223-PA 1..449 1..440 1227 59.4 Plus
Dvir\GJ17447-PA 330 GJ17447-PA 82..326 85..342 608 46.3 Plus
Dvir\GJ17403-PA 357 GJ17403-PA 138..357 113..341 359 36.4 Plus
Dvir\GJ12322-PA 331 GJ12322-PA 4..278 68..340 317 30.3 Plus
Dvir\GJ23586-PA 272 GJ23586-PA 31..265 112..337 223 27.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19484-PA 534 GK19484-PA 1..534 1..527 1480 59.1 Plus
Dwil\GK23334-PA 301 GK23334-PA 72..297 112..340 554 50.7 Plus
Dwil\GK23326-PA 297 GK23326-PA 74..294 112..337 287 33.9 Plus
Dwil\GK13282-PA 300 GK13282-PA 14..269 83..337 271 28.6 Plus
Dwil\GK12035-PA 312 GK12035-PA 48..284 112..337 226 29.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12834-PA 530 GE12834-PA 1..530 1..527 2181 87.2 Plus
Dyak\GE12147-PA 465 GE12147-PA 209..461 77..342 649 50 Plus
Dyak\GE12143-PA 295 GE12143-PA 74..294 113..340 335 37 Plus
Dyak\GE21890-PA 335 GE21890-PA 28..285 83..340 257 26.2 Plus
Dyak\GE10587-PA 311 GE10587-PA 47..283 112..337 221 28.9 Plus

LP05719.hyp Sequence

Translation from 206 to 1789

> LP05719.hyp
MFDTALGTVLSVMVQLIILVFGQILGQVVQHPLITTGLCLLGAFAYHADQ
ETLKEIYQRVLLLIRTPLQFGNTSCSRNSAPVYGYDMQHGPHTWLPKSRS
SSSSVEEATFFQSPVNIDESQIQRMAIRELLSWNHYDDLPASITLENTGQ
TLILRAQFHGNAPTISGADLLASYTFLELRFHWGWCNSEGSEHTINHRKF
PLEMQVMHKTGSGIPRTCTSSYDLLMIGYVFELSAHNPFLDPLVQNLRLV
QKPGKRVQISPFPISYLMYQFRSGFYSYGGSLTHPPCYQGTEWFIFPESL
AISDFQLRHFRLLLGPDGISPIARNSRPVQHMGNRVVSLNCFCPYDAAQL
SRMHVELCQAQAQEEHEEERIEQEQQLELERELERQRESDLKAQQEQASE
AAIAASEDEGQLIETIDTTTIITSSSNTSICMTTLMRKDSPRQLEQPSQM
PMMAPNQGNFCNPGIVIFSGVNESKSKCGIHQDTPEELMIHNRGTGRNMG
VQNGCKADAFCGVGDGVNIGIRMELVE*

LP05719.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12309-PA 527 CG12309-PA 1..527 1..527 2772 100 Plus
CG9235-PA 332 CG9235-PA 68..326 71..340 655 49.3 Plus
CG15227-PB 295 CG15227-PB 74..294 113..340 328 33.5 Plus
CAH2-PA 335 CG6906-PA 28..285 83..340 254 25.8 Plus
CG5379-PB 303 CG5379-PB 6..301 53..371 238 25.7 Plus