Clone LP05860 Report

Search the DGRC for LP05860

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:58
Well:60
Vector:pOT2
Associated Gene/TranscriptRab3-RA
Protein status:LP05860.pep: gold
Preliminary Size:3402
Sequenced Size:3762

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7576 2001-01-01 Release 2 assignment
CG7576 2001-07-04 Blastp of sequenced clone
CG7576 2003-01-01 Sim4 clustering to Release 3
Rab3 2008-04-29 Release 5.5 accounting
Rab3 2008-08-15 Release 5.9 accounting
Rab3 2008-12-18 5.12 accounting

Clone Sequence Records

LP05860.complete Sequence

3762 bp (3762 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060449

> LP05860.complete
CAGGGAAATTGTGTGGGCAGCAGCCAGTCATCCAGTCAGTCAGTTAGCCA
GCCAGTCAGCCAGGTTGAAACAGTTGAATTATGAAAACGTATACAAAACT
GGCCCGTTTTCGCCGCACCAGTCAATTCGCCGCCTGAGAGCGAAGAAAAA
ATTGAAAATTGTGTGTCCTTTGGTGTCGACGTGTCGAGGCAAAAAGGTAG
AACAGTTGGTGCGTTGCATTTGCTGAATAATTGAGCCACTGCAGCCGGAG
TCAGTTCAATTCTGGCCAGACGAGTGGGTCCGCGGGCGTGTGAATAGTTG
ATTGGGTAACCGTAAACAACTCGACGAATCAATCGACGTGAAATCGCGGC
GTATGTCAGTCCAGTGCCAAGGCTGAGTCGAGTCCTTTTCCTTATCCCTT
CAGCGAAAGGAGCTGCCATTATCGATTTGTGTGTATGTGCGAGCAACAAC
ACGGCGTACCTCTCACCCACACATCGAAAACAGCAGGATATTCTTGTGAC
AGCAGGATCTGCAGCAGCACCATCATAAACAGCAACTGAGATATTAGCAG
CAGATACTACTGTAACCGCAATAACCTCAAGAAAGACACCGCTCTAAACG
GATAAAATGGCGAGTGGCGGAGACCCCAAGTGGCAGAAGGATGCCGCCGA
CCAGAACTTTGACTACATGTTCAAGCTGCTCATCATTGGCAACTCCAGCG
TGGGCAAGACCAGCTTCCTCTTCCGCTACGCCGACGATAGCTTCACATCC
GCCTTCGTCTCCACGGTGGGCATTGACTTTAAGGTGAAGACCGTATTTCG
GCACGATAAGCGCGTGAAACTCCAGATCTGGGACACTGCTGGACAGGAGC
GGTACAGAACTATCACCACAGCCTACTACCGAGGAGCGATGGGTTTCATC
CTAATGTACGATGTCACTAATGAGGACAGTTTTAACTCGGTTCAGGATTG
GGTGACACAGATCAAAACGTATTCGTGGGACAATGCCCAGGTGATCCTGG
TGGGCAACAAGTGCGACATGGAGGACCAGCGGGTAATCAGCTTCGAACGT
GGTCGCCAGTTGGCCGATCAATTGGGTGTTGAGTTCTTCGAGACCTCTGC
CAAGGAGAACGTCAACGTCAAGGCTGTTTTCGAGCGTTTGGTGGACATCA
TCTGCGATAAGATGTCCGAGAGCCTGGACGCGGATCCGACGTTAGTAGGC
GGTGGCCAGAAGGGCCAGAGGTTGACGGATCAGCCGCAGGGCACGCCTAA
TGCCAACTGCAATTGTTAGAGGTTCGATGGATGAATTGGAGGACGGGTGG
ATCCTGCAGCACCGCAACAACCATATTCGTAACAACAATAGACAACAGAA
TTTGGAAACTAGCTAATTAGTCAACATTGAACAGGGCTTCGAAGCTAATC
CCTCAGTAAGCCGACGATGACGGTTCGAATACCGATGAAGAGATAATGAT
AATATAGGCGCGCATTCCCCTTTCCGTGGGGGCGTGGCCCTGTGTTTGTA
TTGATATGTGTATGTATATCCTTTGCGTAAGCTCGCCTCAGTGTAAATGT
CAAATGTTATTTAATCCGATATTTGAATTGTATCTTGTAATTTGTAATTG
GTATTTTATAACCTGTAATTTAATTGGCTGACCGCAGCGATGAAATATTT
GTTGAGTGTGTGTATTGAGTTGAATTTATTCGAATTGCGAGATCGACGAG
ATTCAGAAAAAAGAGCAAAGAATTTAACGAAAGTCCGATTTGACGGTAAT
TCGGCACTAATTAAGCATGCACCCCGAGTGCTGATTAAAGTCATTTGATT
AGCGACCCCAACACAAGGGGGTCAAGAGGTCAGGAGGTCAGTCAGCACGA
GTATTTCGAACCGTTCTCCACATCCACATGTATATACGCTGGCTAAACTG
TACAGTTTGAGATGCTTGACGAAACGCACAAAGCTAGCGAATCGGTGAAA
TCGAACAGACAACTAACTACTTATATAGTACACCCCTCCACCCTCACACA
CACACACACACCCATGTATATGTATGGATACACACACAAACACAAACAAA
GAGCACTATACACACACACACGCCGGAAACGGATGTAGTTAAACCAAAAA
TCCCCGGCTTGAAAAATTCTAGCAAACACAAACAAAAGCGGCTGAGTGGT
AAGCCGCTATTATTAAATATTATGATTATTATTATTATGTACGTATGTAT
TTATGTAGTGAAATGGAAAGTTTTAATGTGTTGCAAATGATAAAAGAAAT
ATATACATCAAATATACATGTATCGCATAGAGTACCAGCCAGACCCACAG
CTACACATAGAGGTACTAGCAGTTTTTGTTGCCCGAATTCCCTATCGAAC
ACCTTCCGAGGGCCAGAGTGACAATAACCCGCAGGAGATCAGGAGCACCA
CTGCGGCACCCCTCCCCCTCGAGGTCAGGCCACCCAAGTTAATTTTCCAG
CACCCAACCGCCCACTTCATCCACACTTTGCTTTCCCCTACGAGACTGTT
GCGAACTGAATCCGGATTGCGAGTTACTTGAACCCACCGAGCCAGCTGAG
AGATCGGTGCATTTAATTTGCCAGCCCCTTCCTAGCCCCAAAATCCGAAT
CCTTAAAACCCCCCGTTTTATATGCACACACCACCCACTTTTCTACCTGT
ATTCTATATACTTAATGTATACTGTACAAGGCTTTCCTTTGTTGCCGCTT
TAATGACACAACAAACCGCTGCCTAAACTAAATTTGAACGAAGATTGTAA
GCGGGACAAGGACTTTGACTTGGGGGGCTAATACTGCTGAATCTGAATAT
GTAACTGAATATATACATATATATTTGCCAATGCTCGTTAATGTTAAATA
TGTGTACAAGCAGAGTTTCACTTAAATTACGATTAAATTAAAGGCATATC
GCTGTATTATAAATACCCAAAAGAAGACAAAACGAAACGGAAAAACCGAA
TCCGCACCCACGAAAATGCCAGGAAAATCTACACAACAGCGCAACGAGTT
GCTTAGTGCCCGGGAGGAGAAGAGGGGAAGAGAGCTGGGATATAGAAGGG
GGAAATGGAGTGGAATGATTCTATACGAAAATGCCTTAAGCCAGTCTTGG
TCCTTTTGGCATTCGAACTGTTTTGTATTATAATTAATCATAAAACGCGC
ATAACCACTCGTTCAAGAATTTGTCCTTATATTCGTGTGTGGATTTCGCT
TTTAGTCAAGTCCCAACTAAATAATCCAATCCAATTCAATTAAGCTAAAC
CAAACTAAACTGATGCTAAAACTAAAACTAGACCGGAGTAAAATCAAAGC
AAATAATACAAACGTACCCGAGAAACAATTGTTGATGAATTCGTGCATAG
GCATAACGCAAACATTTTTGCGCTACATTGTTGTCATTTGAACCAATACT
TAGCATATTGATTATTGCATTGTGTACTCAGCTAAACCAAATATTTGTAA
TCCCTATGAAAACAATTCCAACTCCAAACAAAATGGCATTATTTGGATTC
CATTTAAATTGCAACAGAATAACCCAACTAGGCAATGTATACAAGAACAT
CAAAATAAAATAATTCAATATATTATTCAATGATGGTTTTTAAACACTAA
CACACATCTGCATACCCGTACTTATGAGGATACTAACATAGATATACAGA
TACACACATATATACATAATATACACATAATGGTATTGAACTTATTGTAT
TCCCATAATAAAATATATGCAAAAGGTGTATGGTAAAACAAAGAAAAAAA
AAAAAAAAAAAA

LP05860.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
Rab3-RA 3864 Rab3-RA 114..3859 1..3745 18690 99.9 Plus
Rab8.c 1727 Rab8.c 569..633 661..725 145 81.5 Plus
Rab8.c 1727 Rab8.c 731..801 823..893 145 80.2 Plus
Rab8.a 2180 Rab8.a 500..564 661..725 145 81.5 Plus
Rab8.a 2180 Rab8.a 662..732 823..893 145 80.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 6608887..6611511 3743..1121 12995 99.8 Minus
chr2R 21145070 chr2R 6616170..6616755 586..1 2915 99.8 Minus
chr2R 21145070 chr2R 6612358..6612603 832..587 1215 99.6 Minus
chr2R 21145070 chr2R 6611566..6611739 1123..950 870 100 Minus
chr2R 21145070 chr2R 6611801..6611921 951..831 605 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:50:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10721333..10723958 3745..1121 13080 100 Minus
2R 25286936 2R 10728605..10729190 586..1 2930 100 Minus
2R 25286936 2R 10724805..10725050 832..587 1230 100 Minus
2R 25286936 2R 10724013..10724186 1123..950 870 100 Minus
2R 25286936 2R 10724248..10724368 951..831 605 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 10722532..10725157 3745..1121 13090 99.9 Minus
2R 25260384 2R 10729804..10730389 586..1 2930 100 Minus
2R 25260384 2R 10726004..10726249 832..587 1230 100 Minus
2R 25260384 2R 10725212..10725385 1123..950 870 100 Minus
2R 25260384 2R 10725447..10725567 951..831 605 100 Minus
Blast to na_te.dros performed 2019-03-16 20:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Mar 610 Dwil\Mar MAR 610bp Derived from AF518731. 254..393 2309..2165 145 60.5 Minus
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 62..175 2166..2272 137 64 Plus
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 1562..1643 2272..2195 129 67.1 Minus
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 6130..6232 3207..3312 126 61.7 Plus
accord 7404 accord ACCORD 7404bp 4893..4950 3440..3495 123 72.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2391 512..592 119 62.2 Plus

LP05860.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:49:08 Download gff for LP05860.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 6608887..6611509 1123..3743 99 <- Minus
chr2R 6611567..6611738 951..1122 100 <- Minus
chr2R 6611802..6611920 832..950 100 <- Minus
chr2R 6612359..6612603 587..831 99 <- Minus
chr2R 6616170..6616755 1..586 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:36:58 Download gff for LP05860.complete
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 1..663 607..1269 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:14:03 Download gff for LP05860.complete
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 1..663 607..1269 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:28:38 Download gff for LP05860.complete
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 1..663 607..1269 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:45:21 Download gff for LP05860.complete
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 1..663 607..1269 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:54:23 Download gff for LP05860.complete
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 1..663 607..1269 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:07:00 Download gff for LP05860.complete
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 1..3744 1..3743 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:14:03 Download gff for LP05860.complete
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 1..3744 1..3743 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:38 Download gff for LP05860.complete
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 14..3757 1..3743 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:45:21 Download gff for LP05860.complete
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 1..3744 1..3743 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:23 Download gff for LP05860.complete
Subject Subject Range Query Range Percent Splice Strand
Rab3-RA 14..3757 1..3743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:08 Download gff for LP05860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10724249..10724367 832..950 100 <- Minus
2R 10724806..10725050 587..831 100 <- Minus
2R 10721335..10723956 1123..3743 99 <- Minus
2R 10724014..10724185 951..1122 100 <- Minus
2R 10728605..10729190 1..586 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:08 Download gff for LP05860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10724249..10724367 832..950 100 <- Minus
2R 10724806..10725050 587..831 100 <- Minus
2R 10721335..10723956 1123..3743 99 <- Minus
2R 10724014..10724185 951..1122 100 <- Minus
2R 10728605..10729190 1..586 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:08 Download gff for LP05860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10724249..10724367 832..950 100 <- Minus
2R 10724806..10725050 587..831 100 <- Minus
2R 10721335..10723956 1123..3743 99 <- Minus
2R 10724014..10724185 951..1122 100 <- Minus
2R 10728605..10729190 1..586 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:38 Download gff for LP05860.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6608840..6611461 1123..3743 99 <- Minus
arm_2R 6611519..6611690 951..1122 100 <- Minus
arm_2R 6611754..6611872 832..950 100 <- Minus
arm_2R 6612311..6612555 587..831 100 <- Minus
arm_2R 6616110..6616695 1..586 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:23:09 Download gff for LP05860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10722534..10725155 1123..3743 99 <- Minus
2R 10725213..10725384 951..1122 100 <- Minus
2R 10725448..10725566 832..950 100 <- Minus
2R 10726005..10726249 587..831 100 <- Minus
2R 10729804..10730389 1..586 100   Minus

LP05860.pep Sequence

Translation from 606 to 1268

> LP05860.pep
MASGGDPKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAF
VSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM
YDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGR
QLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSESLDADPTLVGGG
QKGQRLTDQPQGTPNANCNC*

LP05860.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11093-PA 220 GF11093-PA 1..220 1..220 1172 99.5 Plus
Dana\GF20241-PA 204 GF20241-PA 2..175 14..187 533 54 Plus
Dana\GF10843-PA 207 GF10843-PA 3..188 16..201 529 50 Plus
Dana\GF17263-PA 205 GF17263-PA 3..165 13..175 476 49.1 Plus
Dana\GF20451-PA 200 GF20451-PA 3..161 16..175 447 51.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22724-PA 220 GG22724-PA 1..220 1..220 1176 100 Plus
Dere\GG19277-PA 204 GG19277-PA 2..175 14..187 538 54 Plus
Dere\GG13365-PA 207 GG13365-PA 3..188 16..201 529 50 Plus
Dere\GG14761-PA 205 GG14761-PA 3..165 13..175 476 49.1 Plus
Dere\GG18010-PA 201 GG18010-PA 3..199 16..218 460 44.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24197-PA 220 GH24197-PA 1..220 1..220 1149 98.2 Plus
Dgri\GH16908-PA 207 GH16908-PA 3..188 16..201 530 50 Plus
Dgri\GH12621-PA 204 GH12621-PA 2..175 14..187 529 52.9 Plus
Dgri\GH18937-PA 205 GH18937-PA 3..165 13..175 476 49.1 Plus
Dgri\GH24326-PA 201 GH24326-PA 3..161 16..175 467 53.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
Rab3-PB 220 CG7576-PB 1..220 1..220 1158 100 Plus
Rab3-PA 220 CG7576-PA 1..220 1..220 1158 100 Plus
Rab10-PA 204 CG17060-PA 2..175 14..187 531 54 Plus
Rab8-PC 207 CG8287-PC 3..188 16..201 520 50 Plus
Rab8-PA 207 CG8287-PA 3..188 16..201 520 50 Plus
Rab1-PA 205 CG3320-PA 3..165 13..175 467 49.1 Plus
Rab35-PB 201 CG9575-PB 3..170 16..184 452 49.7 Plus
Rab35-PD 201 CG9575-PD 3..170 16..184 452 49.7 Plus
Rab35-PA 201 CG9575-PA 3..170 16..184 452 49.7 Plus
Rab19-PB 219 CG7062-PP3-RB 15..182 15..180 424 44 Plus
Rab19-PA 219 CG7062-PA 15..182 15..180 424 44 Plus
RabX4-PA 213 CG31118-PA 4..163 17..175 409 46.2 Plus
Rab27-PC 230 CG14791-PC 4..184 14..189 401 42 Plus
Rab35-PC 190 CG9575-PC 4..159 28..184 400 47.8 Plus
Rab9Fb-PA 214 CG32670-PA 4..193 18..210 400 39.9 Plus
Rab8-PB 172 CG8287-PB 7..153 55..201 390 49 Plus
Rab6-PB 208 CG6601-PB 13..208 22..220 387 38.3 Plus
Rab6-PA 208 CG6601-PA 13..208 22..220 387 38.3 Plus
Rab4-PA 213 CG4921-PA 3..211 16..220 380 37.6 Plus
Rab4-PB 213 CG4921-PB 3..211 16..220 380 37.6 Plus
Rab11-PA 214 CG5771-PA 3..184 13..194 380 37.4 Plus
Rab11-PB 214 CG5771-PB 3..184 13..194 380 37.4 Plus
Rab26-PE 410 CG34410-PE 206..368 15..175 378 45.4 Plus
Rab26-PD 410 CG34410-PD 206..368 15..175 378 45.4 Plus
Rab26-PC 410 CG34410-PC 206..368 15..175 378 45.4 Plus
Rab27-PB 236 CG14791-PB 19..190 23..189 376 41.9 Plus
Rab14-PD 215 CG4212-PD 3..165 13..175 371 38.7 Plus
Rab14-PA 215 CG4212-PA 3..165 13..175 371 38.7 Plus
Rab14-PB 239 CG4212-PB 27..189 13..175 371 38.7 Plus
Rab2-PB 213 CG3269-PB 2..201 17..216 365 35.5 Plus
Rab2-PA 213 CG3269-PA 2..201 17..216 365 35.5 Plus
Rab5-PI 219 CG3664-PI 10..183 2..175 360 39.7 Plus
Rab5-PH 219 CG3664-PH 10..183 2..175 360 39.7 Plus
Rab5-PG 219 CG3664-PG 10..183 2..175 360 39.7 Plus
Rab5-PE 219 CG3664-PE 10..183 2..175 360 39.7 Plus
Rab5-PC 219 CG3664-PC 10..183 2..175 360 39.7 Plus
Rab5-PD 219 CG3664-PD 10..183 2..175 360 39.7 Plus
Rab5-PF 219 CG3664-PF 10..183 2..175 360 39.7 Plus
Rab5-PB 219 CG3664-PB 10..183 2..175 360 39.7 Plus
Rab5-PA 219 CG3664-PA 10..183 2..175 360 39.7 Plus
Rab21-PC 222 CG17515-PC 14..188 22..194 357 39.4 Plus
Rab21-PD 222 CG17515-PD 14..188 22..194 357 39.4 Plus
Rab30-PD 223 CG9100-PD 2..190 16..208 356 37.3 Plus
Rab30-PC 223 CG9100-PC 2..190 16..208 356 37.3 Plus
Rab30-PB 223 CG9100-PB 2..190 16..208 356 37.3 Plus
Rab30-PA 223 CG9100-PA 2..190 16..208 356 37.3 Plus
RabX2-PA 195 CG2885-PA 3..164 17..178 348 39.5 Plus
Rab26-PG 388 CG34410-PG 179..346 12..175 340 42.9 Plus
Rab26-PB 388 CG34410-PB 179..346 12..175 340 42.9 Plus
Rab7-PC 207 CG5915-PC 8..207 21..220 314 34.8 Plus
Rab7-PB 207 CG5915-PB 8..207 21..220 314 34.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20173-PA 220 GI20173-PA 1..220 1..220 1165 99.1 Plus
Dmoj\GI11034-PA 204 GI11034-PA 2..175 14..187 537 54 Plus
Dmoj\GI13664-PA 207 GI13664-PA 3..188 16..201 530 50 Plus
Dmoj\GI10837-PA 205 GI10837-PA 3..165 13..175 476 49.1 Plus
Dmoj\GI14806-PA 201 GI14806-PA 3..161 16..175 461 53.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17187-PA 220 GL17187-PA 1..220 1..220 1172 99.5 Plus
Dper\GL15675-PA 207 GL15675-PA 3..188 16..201 532 50 Plus
Dper\GL27164-PA 205 GL27164-PA 3..204 13..218 480 42.2 Plus
Dper\GL12921-PA 200 GL12921-PA 5..161 18..175 439 51.9 Plus
Dper\GL13084-PA 170 GL13084-PA 2..141 14..187 415 47.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20450-PA 220 GA20450-PA 1..220 1..220 1172 99.5 Plus
Dpse\GA26078-PA 204 GA26078-PA 2..175 14..187 535 54 Plus
Dpse\GA23499-PA 207 GA23499-PA 3..188 16..201 532 50 Plus
Dpse\GA17362-PA 205 GA17362-PA 3..204 13..218 480 42.2 Plus
Dpse\GA21885-PA 200 GA21885-PA 3..161 16..175 445 51.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20500-PA 220 GM20500-PA 1..220 1..220 1176 100 Plus
Dsec\GM23016-PA 204 GM23016-PA 2..175 14..187 538 54 Plus
Dsec\GM15893-PA 207 GM15893-PA 3..188 16..201 529 50 Plus
Dsec\GM15089-PA 205 GM15089-PA 3..165 13..175 476 49.1 Plus
Dsec\GM22691-PA 201 GM22691-PA 3..199 16..218 457 44.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25963-PA 115 GD25963-PA 1..115 1..115 611 100 Plus
Dsim\GD12244-PA 207 GD12244-PA 3..188 16..201 529 50 Plus
Dsim\GD19996-PA 205 GD19996-PA 3..165 13..175 476 49.1 Plus
Dsim\GD15551-PA 201 GD15551-PA 3..199 16..218 457 44.2 Plus
Dsim\GD11278-PA 215 GD11278-PA 2..197 16..214 427 40.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20130-PA 220 GJ20130-PA 1..220 1..220 1145 97.7 Plus
Dvir\GJ15815-PA 204 GJ15815-PA 2..175 14..187 540 54.6 Plus
Dvir\GJ13999-PA 207 GJ13999-PA 3..188 16..201 530 50 Plus
Dvir\GJ14443-PA 205 GJ14443-PA 3..165 13..175 477 49.1 Plus
Dvir\GJ19473-PA 201 GJ19473-PA 3..161 16..175 460 53.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19661-PA 220 GK19661-PA 1..220 1..220 1171 99.5 Plus
Dwil\GK25049-PA 204 GK25049-PA 2..175 14..187 541 54.6 Plus
Dwil\GK17214-PA 207 GK17214-PA 3..205 16..219 532 47.3 Plus
Dwil\GK12772-PA 205 GK12772-PA 3..165 13..175 475 49.1 Plus
Dwil\GK16335-PA 200 GK16335-PA 5..161 18..175 453 52.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13081-PA 220 GE13081-PA 1..220 1..220 1176 100 Plus
Dyak\GE17866-PA 204 GE17866-PA 2..175 14..187 538 54 Plus
Dyak\GE22459-PA 207 GE22459-PA 3..188 16..201 529 50 Plus
Dyak\Rab1-PA 205 GE25003-PA 3..165 13..175 476 49.1 Plus
Dyak\GE17342-PA 201 GE17342-PA 3..199 16..218 460 44.7 Plus

LP05860.hyp Sequence

Translation from 606 to 1268

> LP05860.hyp
MASGGDPKWQKDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAF
VSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM
YDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGR
QLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSESLDADPTLVGGG
QKGQRLTDQPQGTPNANCNC*

LP05860.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
Rab3-PA 220 CG7576-PA 1..220 1..220 1158 100 Plus
Rab10-PA 204 CG17060-PA 2..175 14..187 531 54 Plus
Rab8-PC 207 CG8287-PC 3..188 16..201 520 50 Plus
Rab8-PA 207 CG8287-PA 3..188 16..201 520 50 Plus
Rab1-PA 205 CG3320-PA 3..165 13..175 467 49.1 Plus