Clone LP05865 Report

Search the DGRC for LP05865

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:58
Well:65
Vector:pOT2
Associated Gene/TranscriptCG5656-RA
Protein status:LP05865.pep: gold
Preliminary Size:1869
Sequenced Size:1789

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5656 2001-01-01 Release 2 assignment
CG5656 2001-11-29 Blastp of sequenced clone
CG5656 2003-01-01 Sim4 clustering to Release 3
CG5656 2008-04-29 Release 5.5 accounting
CG5656 2008-08-15 Release 5.9 accounting
CG5656 2008-12-18 5.12 accounting

Clone Sequence Records

LP05865.complete Sequence

1789 bp (1789 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069739

> LP05865.complete
AGACTTCGTAACGCCCCGACCAGTCGAAAGTTAGTTCATCAAAATTCCGT
GCGATGCGTGCTCTCCGGTTCTTTGCGGCTCTTGCCCTCCAACTCACGGC
CTGTAGCAGCCAGTACAAATATGGGCCAGAGCAATCCTGGGACCTCGACT
CTATTTCCGAGTTGAAGAGCAAGGAGTTCTGGTTTCACGACGCCCAGCGC
ACGCTCTACAATAAGCTATCCACTCCACCAAACCAATATCGTGCCAAGAA
TGTCATATTTTTCCTGGGCGACGGTATGTCCGTTCCCACGGTAACCGCAG
GCAGGATCTTCGATGGACAGCTGCGTGGAGTGGTGGGCGAACGGAATCGT
CTGGAGTTCGAGAAATTCAACTATGTCGGTCTGTCCAAGACTTATTGCGT
CAATAAGCAAGTGGCTGACTCCGCCTGCACAGCATCGGCCTATCTGTCGG
GGATCAAGGCGAACTATCTGACCATCGGAGTGACAGCCGATGTGGAGTTG
AACGACTGCAGGGGATCGCGCTTGCCGCAGAATAGGCTCTCCTCGATTGC
CGCCTGGGCGCTTAAAGGTAGCAAATCCGCTGGATTGGTGACCACCACTC
GGGTTACCCACGCCAGTCCGGCCGGAGTTTATGCGCACACTTCGAATCGC
GATTTCGAGAGCGACTACGACGTGACCAAATTGGGTCAAAATCCAGGAAA
CTGTCCGGATATCGCCCAGCAATTGATAGACGGAGATGTGGGCAAGCGAC
TGCGTGTGGTCATGGGCGGTGGAACCATTAAATTCTTGCCCAATACCACG
AACGATGTGTTCGGAAACAAGGGCCAGCGGTTGGATAATAGGAACCTCAT
TGAGGAATGGCAACAAACAAAGCCGGGTAATGCTAGGGTGGTGTTTAGTC
GTACGGATCTCCTGAACAATGATGCGCAGAACACTGACTTCCTGCTGGGG
CTCTTCAATGCCTCTCACTTGGCGTACCACATGGACGACAGCATAGACAC
ACCCACGCTACCCGAGATGACGGCAGCGGCCATAAATGTGCTTTCCCGAG
ATCCAAACGGGTATTTCCTTTTCGTGGAAGGCGGTCGAATCGATCACGCC
CATCATGAGACCAAGGCCAAGAAGGCCTTGGATGAAACCGTTCAGTTTTC
GGACGCAGTGAGAAAGGCACGACAACTCACCAATCCCTGGGACACCTTAA
TTGTGGTGAGTGCGGATCACGGACACACGGTCACGATCAGCGGCTATCCG
GATGTTAACAACAGCATAGTAGGACTCAATTCCGAGCTAAGTAATGTGGA
CCAGCTGCCCTACACGTCCATCTCATATGCCAACGGCCCGGCCTACGAGA
GATTCTACAAATCGACGGACGGAGTGGTGGAGCGCGTTGATCTCCGTAAC
CTGGACTTTTCCAAACCGGATGCCATCTATCCACATGGAGTGCCCATGAC
CGAGGAGACACACGGCGGTGGCGATGTGGCCGTCTATGCTCATGGTCCAT
GGTCTCATCTTTTCACTGGAGTTTACGAACAAAGCACCTTGCCTCATTTG
ATGGGCTTCGCCTCTTGCTTAGGACCTGGAATTACATATTGCGATCTGCA
GCCAAAAGCAAGATACTCTCCCTAGAAAATCCCCTAGGAATAAATATGTT
TAGAAATTGAATAAAATGATCTATTCTTAAAACAAATTGCGGAGATTCTA
GAATCGCCATATTTAATCTTAACTTTTTAGCTTATATAGTTCCTGAATAA
AGAGAATAAGCAAAGAAGCAAAAAAAAAAAAAAAAAAAA

LP05865.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5656-RA 1886 CG5656-RA 12..1782 1..1771 8855 100 Plus
CG5656.a 2079 CG5656.a 17..1510 1..1494 7470 100 Plus
CG5656.a 2079 CG5656.a 1527..1808 1490..1771 1395 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21431590..21432698 1496..388 5545 100 Minus
chr3L 24539361 chr3L 21431187..21431466 1769..1490 1385 99.6 Minus
chr3L 24539361 chr3L 21432801..21433063 389..127 1315 100 Minus
chr3L 24539361 chr3L 21433635..21433763 129..1 645 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:50:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21442630..21443738 1496..388 5545 100 Minus
3L 28110227 3L 21442225..21442506 1771..1490 1395 99.6 Minus
3L 28110227 3L 21443841..21444103 389..127 1315 100 Minus
3L 28110227 3L 21444675..21444803 129..1 645 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21435730..21436838 1496..388 5545 100 Minus
3L 28103327 3L 21435325..21435606 1771..1490 1395 99.6 Minus
3L 28103327 3L 21436941..21437203 389..127 1315 100 Minus
3L 28103327 3L 21437775..21437903 129..1 645 100 Minus
Blast to na_te.dros performed 2019-03-16 06:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
INE-1 611 INE-1 INE1 611bp Derived from U66884 (e1371475) (Rel. 52, Last updated, Version 6). 154..191 1746..1709 127 81.6 Minus

LP05865.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:15:30 Download gff for LP05865.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21431592..21432696 390..1494 100 <- Minus
chr3L 21432801..21433060 130..389 100 <- Minus
chr3L 21433635..21433763 1..129 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:37:04 Download gff for LP05865.complete
Subject Subject Range Query Range Percent Splice Strand
CG5656-RA 1..1572 54..1625 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:24:53 Download gff for LP05865.complete
Subject Subject Range Query Range Percent Splice Strand
CG5656-RA 1..1572 54..1625 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:17:43 Download gff for LP05865.complete
Subject Subject Range Query Range Percent Splice Strand
CG5656-RA 1..1572 54..1625 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:51:58 Download gff for LP05865.complete
Subject Subject Range Query Range Percent Splice Strand
CG5656-RA 1..1572 54..1625 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:19:09 Download gff for LP05865.complete
Subject Subject Range Query Range Percent Splice Strand
CG5656-RA 1..1572 54..1625 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:00:35 Download gff for LP05865.complete
Subject Subject Range Query Range Percent Splice Strand
CG5656-RA 12..1780 1..1769 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:24:53 Download gff for LP05865.complete
Subject Subject Range Query Range Percent Splice Strand
CG5656-RA 12..1780 1..1769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:43 Download gff for LP05865.complete
Subject Subject Range Query Range Percent Splice Strand
CG5656-RA 17..1785 1..1769 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:51:58 Download gff for LP05865.complete
Subject Subject Range Query Range Percent Splice Strand
CG5656-RA 12..1780 1..1769 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:19:09 Download gff for LP05865.complete
Subject Subject Range Query Range Percent Splice Strand
CG5656-RA 17..1785 1..1769 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:15:30 Download gff for LP05865.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21443841..21444100 130..389 100 <- Minus
3L 21442227..21442501 1495..1769 100 <- Minus
3L 21442632..21443736 390..1494 100 <- Minus
3L 21444675..21444803 1..129 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:15:30 Download gff for LP05865.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21443841..21444100 130..389 100 <- Minus
3L 21442227..21442501 1495..1769 100 <- Minus
3L 21442632..21443736 390..1494 100 <- Minus
3L 21444675..21444803 1..129 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:15:30 Download gff for LP05865.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21443841..21444100 130..389 100 <- Minus
3L 21442227..21442501 1495..1769 100 <- Minus
3L 21442632..21443736 390..1494 100 <- Minus
3L 21444675..21444803 1..129 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:43 Download gff for LP05865.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21435327..21435601 1495..1769 100 <- Minus
arm_3L 21435732..21436836 390..1494 100 <- Minus
arm_3L 21436941..21437200 130..389 100 <- Minus
arm_3L 21437775..21437903 1..129 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:28:09 Download gff for LP05865.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21435327..21435601 1495..1769 100 <- Minus
3L 21435732..21436836 390..1494 100 <- Minus
3L 21436941..21437200 130..389 100 <- Minus
3L 21437775..21437903 1..129 100   Minus

LP05865.pep Sequence

Translation from 53 to 1624

> LP05865.pep
MRALRFFAALALQLTACSSQYKYGPEQSWDLDSISELKSKEFWFHDAQRT
LYNKLSTPPNQYRAKNVIFFLGDGMSVPTVTAGRIFDGQLRGVVGERNRL
EFEKFNYVGLSKTYCVNKQVADSACTASAYLSGIKANYLTIGVTADVELN
DCRGSRLPQNRLSSIAAWALKGSKSAGLVTTTRVTHASPAGVYAHTSNRD
FESDYDVTKLGQNPGNCPDIAQQLIDGDVGKRLRVVMGGGTIKFLPNTTN
DVFGNKGQRLDNRNLIEEWQQTKPGNARVVFSRTDLLNNDAQNTDFLLGL
FNASHLAYHMDDSIDTPTLPEMTAAAINVLSRDPNGYFLFVEGGRIDHAH
HETKAKKALDETVQFSDAVRKARQLTNPWDTLIVVSADHGHTVTISGYPD
VNNSIVGLNSELSNVDQLPYTSISYANGPAYERFYKSTDGVVERVDLRNL
DFSKPDAIYPHGVPMTEETHGGGDVAVYAHGPWSHLFTGVYEQSTLPHLM
GFASCLGPGITYCDLQPKARYSP*

LP05865.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23560-PA 523 GF23560-PA 1..523 1..523 2515 87.6 Plus
Dana\GF17216-PA 543 GF17216-PA 58..528 35..507 1247 51 Plus
Dana\GF12326-PA 544 GF12326-PA 59..540 22..514 1152 46.8 Plus
Dana\GF10455-PA 525 GF10455-PA 37..517 28..508 1134 48.3 Plus
Dana\GF23984-PA 517 GF23984-PA 42..517 31..514 1112 46.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13235-PA 529 GG13235-PA 1..523 1..523 2749 96.9 Plus
Dere\GG16809-PA 546 GG16809-PA 61..530 35..506 1226 50.9 Plus
Dere\GG15276-PA 517 GG15276-PA 42..517 31..514 1133 47.9 Plus
Dere\GG20709-PA 532 GG20709-PA 39..531 8..514 1132 45 Plus
Dere\GG24085-PA 515 GG24085-PA 41..513 35..508 1118 49.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15376-PA 523 GH15376-PA 1..520 4..523 2141 74.7 Plus
Dgri\GH18436-PA 542 GH18436-PA 62..532 41..513 1231 49.6 Plus
Dgri\GH16243-PA 525 GH16243-PA 48..516 34..508 1127 49.7 Plus
Dgri\GH21450-PA 529 GH21450-PA 49..527 22..514 1115 46.9 Plus
Dgri\GH20675-PA 539 GH20675-PA 64..538 38..514 1115 47.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
Alp1-PA 523 CG5656-PA 1..523 1..523 2766 100 Plus
Alp1-PB 530 CG5656-PB 1..530 1..523 2748 98.7 Plus
phu-PA 546 CG8147-PA 61..530 35..506 1206 51.2 Plus
Alp9-PB 517 CG5150-PB 42..517 31..514 1110 47.7 Plus
Alp9-PA 517 CG5150-PA 42..517 31..514 1110 47.7 Plus
Alp7-PA 543 CG3292-PA 64..540 36..514 1102 47.3 Plus
Alp6-PA 515 CG1809-PA 2..513 3..508 1101 47.8 Plus
Alp2-PA 538 CG3290-PA 54..531 22..513 1101 47 Plus
Alp8-PB 533 CG3264-PB 33..532 12..514 1085 44.4 Plus
Alp8-PA 533 CG3264-PA 33..532 12..514 1085 44.4 Plus
Alp10-PA 524 CG10592-PA 8..515 4..508 1076 46 Plus
Alp5-PA 522 CG10827-PA 62..521 42..513 1050 47.4 Plus
Alp11-PA 483 CG8105-PA 42..474 43..514 872 40.9 Plus
Alp4-PA 596 CG1462-PA 40..548 24..514 802 37.8 Plus
Alp12-PE 596 CG16771-PE 101..579 29..507 750 37.7 Plus
Alp12-PD 596 CG16771-PD 101..579 29..507 750 37.7 Plus
Alp12-PC 596 CG16771-PC 101..579 29..507 750 37.7 Plus
Alp12-PB 596 CG16771-PB 101..579 29..507 750 37.7 Plus
Alp12-PA 596 CG16771-PA 101..579 29..507 750 37.7 Plus
Alp4-PB 502 CG1462-PB 1..454 75..514 738 38.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12980-PA 503 GI12980-PA 2..503 23..523 2066 74.2 Plus
Dmoj\GI24012-PA 547 GI24012-PA 42..536 18..513 1279 50.8 Plus
Dmoj\GI19038-PA 492 GI19038-PA 15..491 36..514 1158 47.7 Plus
Dmoj\GI22009-PA 526 GI22009-PA 60..520 42..513 1143 50.1 Plus
Dmoj\GI13179-PA 525 GI13179-PA 43..517 28..508 1130 49.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17170-PA 520 GL17170-PA 29..520 22..517 1141 47.8 Plus
Dper\GL16939-PA 542 GL16939-PA 58..539 22..514 1118 46.4 Plus
Dper\GL23248-PA 525 GL23248-PA 47..523 25..513 1088 46.9 Plus
Dper\GL12007-PA 538 GL12007-PA 48..528 28..507 1083 48.4 Plus
Dper\GL16938-PA 533 GL16938-PA 52..530 22..514 1070 44.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24639-PA 521 GA24639-PA 4..521 6..523 2333 80.3 Plus
Dpse\GA20850-PA 543 GA20850-PA 58..527 35..506 1237 50.5 Plus
Dpse\GA14786-PA 520 GA14786-PA 4..520 2..517 1145 46.5 Plus
Dpse\GA18693-PA 522 GA18693-PA 48..517 35..513 1121 47.2 Plus
Dpse\GA17199-PA 542 GA17199-PA 58..539 22..514 1118 46.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22140-PA 523 GM22140-PA 1..523 1..523 2787 98.3 Plus
Dsec\GM23808-PA 546 GM23808-PA 61..530 35..506 1227 51.2 Plus
Dsec\GM21133-PA 515 GM21133-PA 2..513 3..508 1136 48.4 Plus
Dsec\GM14710-PA 517 GM14710-PA 42..517 31..514 1126 47.3 Plus
Dsec\GM13909-PA 524 GM13909-PA 8..515 4..508 1099 46.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18617-PA 546 GD18617-PA 61..530 35..506 1224 51.2 Plus
Dsim\GD12118-PA 241 GD12118-PA 1..210 1..210 1112 99 Plus
Dsim\GD13186-PA 524 GD13186-PA 8..515 4..508 1103 46.1 Plus
Dsim\GD25137-PA 533 GD25137-PA 53..532 22..514 1084 45 Plus
Dsim\GD13892-PA 511 GD13892-PA 42..511 31..514 1074 46.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13123-PA 521 GJ13123-PA 2..521 1..523 2222 77.1 Plus
Dvir\GJ23643-PA 545 GJ23643-PA 45..535 19..513 1228 48.2 Plus
Dvir\GJ13410-PA 526 GJ13410-PA 53..526 34..514 1119 46.9 Plus
Dvir\GJ15093-PA 529 GJ15093-PA 40..527 22..514 1106 45.5 Plus
Dvir\GJ20005-PA 538 GJ20005-PA 63..537 36..514 1100 46.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16996-PA 534 GK16996-PA 27..534 14..523 2336 83.3 Plus
Dwil\GK10963-PA 547 GK10963-PA 59..537 35..513 1222 50 Plus
Dwil\GK16879-PA 530 GK16879-PA 42..522 28..508 1102 48.6 Plus
Dwil\GK17300-PA 524 GK17300-PA 54..524 36..514 1099 47.4 Plus
Dwil\GK20836-PA 532 GK20836-PA 52..531 22..515 1090 45.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22974-PA 523 GE22974-PA 1..523 1..523 2749 96.7 Plus
Dyak\GE22333-PA 523 GE22333-PA 1..523 1..523 2744 96.6 Plus
Dyak\GE25953-PA 548 GE25953-PA 63..532 35..506 1245 51.8 Plus
Dyak\GE21498-PA 517 GE21498-PA 42..517 31..514 1129 47.9 Plus
Dyak\GE19286-PA 515 GE19286-PA 7..513 10..508 1113 47.7 Plus

LP05865.hyp Sequence

Translation from 53 to 1624

> LP05865.hyp
MRALRFFAALALQLTACSSQYKYGPEQSWDLDSISELKSKEFWFHDAQRT
LYNKLSTPPNQYRAKNVIFFLGDGMSVPTVTAGRIFDGQLRGVVGERNRL
EFEKFNYVGLSKTYCVNKQVADSACTASAYLSGIKANYLTIGVTADVELN
DCRGSRLPQNRLSSIAAWALKGSKSAGLVTTTRVTHASPAGVYAHTSNRD
FESDYDVTKLGQNPGNCPDIAQQLIDGDVGKRLRVVMGGGTIKFLPNTTN
DVFGNKGQRLDNRNLIEEWQQTKPGNARVVFSRTDLLNNDAQNTDFLLGL
FNASHLAYHMDDSIDTPTLPEMTAAAINVLSRDPNGYFLFVEGGRIDHAH
HETKAKKALDETVQFSDAVRKARQLTNPWDTLIVVSADHGHTVTISGYPD
VNNSIVGLNSELSNVDQLPYTSISYANGPAYERFYKSTDGVVERVDLRNL
DFSKPDAIYPHGVPMTEETHGGGDVAVYAHGPWSHLFTGVYEQSTLPHLM
GFASCLGPGITYCDLQPKARYSP*

LP05865.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5656-PA 523 CG5656-PA 1..523 1..523 2766 100 Plus
CG5656-PB 530 CG5656-PB 1..530 1..523 2748 98.7 Plus
CG8147-PA 546 CG8147-PA 61..530 35..506 1206 51.2 Plus
CG5150-PB 517 CG5150-PB 42..517 31..514 1110 47.7 Plus
CG5150-PA 517 CG5150-PA 42..517 31..514 1110 47.7 Plus