Clone LP05929 Report

Search the DGRC for LP05929

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:59
Well:29
Vector:pOT2
Associated Gene/Transcriptspheroide-RA
Protein status:LP05929.pep: gold
Preliminary Size:1366
Sequenced Size:1255

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9675 2001-01-01 Release 2 assignment
CG9676 2001-01-01 Release 2 assignment
CG9675 2002-05-30 Blastp of sequenced clone
CG9675 2003-01-01 Sim4 clustering to Release 3
spheroide 2008-04-29 Release 5.5 accounting
spheroide 2008-08-15 Release 5.9 accounting
spheroide 2008-12-18 5.12 accounting

Clone Sequence Records

LP05929.complete Sequence

1255 bp (1255 high quality bases) assembled on 2002-05-30

GenBank Submission: AY118606

> LP05929.complete
GTAGCAGAACCACCAAATAAAAAACCAAAAAAAAAAATACAGGAACAAAA
TGATGCAGCCGAGACTAGTGATTTTGGGTCTGATCGGATTGACGGCGGTG
GGCATGTGCCACGCCCAGGGACGCATCATGGGAGGGGAGGACGCGGACGC
CACAGCCACGACCTTCACCGCCTCCTTGCGGGTGGACAATGCCCATGTGT
GCGGCGGTAGCATTCTCTCCCAGACCAAAATCCTGACCACCGCCCACTGT
GTGCATCGCGATGGAAAGCTAATCGATGCCAGTCGCCTGGCGTGCCGCGT
GGGCAGTACCAACCAGTATGCTGGTGGCAAGATTGTCAACGTGGAATCGG
TTGCAGTGCATCCGGACTACTATAATCTGAACAACAACCTGGCCGTGATC
ACGCTGAGCTCTGAGCTGACCTACACCGATCGGATCACTGCCATCCCGCT
GGTCGCCAGCGGAGAGGCACTGCCCGCCGAGGGATCGGAGGTGATCGTGG
CCGGCTGGGGACGCACCAGCGACGGCACCAACTCCTACAAGATCCGTCAG
ATATCGCTAAAGGTGGCCCCGGAGGCGACCTGCCTGGATGCGTACAGCGA
TCACGACGAGCAGAGCTTCTGCCTCGCCCACGAGCTGAAGGAGGGCACCT
GCCACGGAGACGGAGGCGGTGGTGCCATCTATGGCAACACGTTGATCGGG
CTGACCAACTTTGTGGTGGGCGCCTGTGGCTCCCGCTATCCGGATGTCTT
TGTCCGACTCTCCAGCTACGCGGATTGGATCCAGGAGCAGATCGCCTAGA
TCCGTTTCATCCCGTTTTTCCTTCACAAGCTAACAAAATAGAAACTATTT
TCCCAAACTCAAAGCGGGCAAAATGACTCAATAGTTTGATTTTGATAAGG
ATAAGGATCGGTGATTGCCACTGGACTTGTGGTTAACGTAATAATCGCTA
ACTAAGCATGCTTATTTATTGTATTTATGACCTCAATGGCATGGCTTTTA
TAGCCCAGAACTCGAGTCATCGATAAAGCATTCCGGTTTTAGGGTCAATT
TAGGCAAGCTTTACGTAATTTGGGCCTACAATTAGTTATATAAGGAAACT
TGAAGACTTTTCAAAATCCAAAACCAAACCTTTTTTTTAAATGCCTTCTT
TTGCTGTTCGAAACTGAAGAGATCTGCACTTTAAGATCTAATAATTATAA
TAAATGTGCAATAATTATGCAATAGGAAACTTTCGGCAAAAAAAAAAAAA
AAAAA

LP05929.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
spheroide-RA 1439 spheroide-RA 204..1439 1..1237 6145 99.9 Plus
spheroide.a 1962 spheroide.a 727..1962 1..1237 6145 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16590099..16591065 1237..271 4820 99.9 Minus
chrX 22417052 chrX 16591330..16591598 270..1 1300 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:50:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16700443..16701412 1240..271 4850 100 Minus
X 23542271 X 16701677..16701945 270..1 1300 99.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16708541..16709510 1240..271 4850 100 Minus
X 23527363 X 16709775..16710043 270..1 1310 99.6 Minus
Blast to na_te.dros performed on 2019-03-16 02:52:58 has no hits.

LP05929.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:54:11 Download gff for LP05929.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16590099..16591065 271..1237 99 <- Minus
chrX 16591330..16591598 1..270 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:37:08 Download gff for LP05929.complete
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 1..750 50..799 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:36:26 Download gff for LP05929.complete
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 1..750 50..799 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:40:19 Download gff for LP05929.complete
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 1..750 50..799 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:28:02 Download gff for LP05929.complete
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 1..750 50..799 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:23:22 Download gff for LP05929.complete
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 1..750 50..799 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:08:27 Download gff for LP05929.complete
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 12..1247 1..1237 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:36:25 Download gff for LP05929.complete
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 12..1247 1..1237 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:40:19 Download gff for LP05929.complete
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 28..1263 1..1237 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:28:02 Download gff for LP05929.complete
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 12..1247 1..1237 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:23:22 Download gff for LP05929.complete
Subject Subject Range Query Range Percent Splice Strand
spheroide-RA 28..1263 1..1237 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:54:11 Download gff for LP05929.complete
Subject Subject Range Query Range Percent Splice Strand
X 16700446..16701412 271..1237 100 <- Minus
X 16701677..16701945 1..270 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:54:11 Download gff for LP05929.complete
Subject Subject Range Query Range Percent Splice Strand
X 16700446..16701412 271..1237 100 <- Minus
X 16701677..16701945 1..270 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:54:11 Download gff for LP05929.complete
Subject Subject Range Query Range Percent Splice Strand
X 16700446..16701412 271..1237 100 <- Minus
X 16701677..16701945 1..270 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:40:19 Download gff for LP05929.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16594479..16595445 271..1237 100 <- Minus
arm_X 16595710..16595978 1..270 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:00:33 Download gff for LP05929.complete
Subject Subject Range Query Range Percent Splice Strand
X 16709775..16710043 1..270 99   Minus
X 16708544..16709510 271..1237 100 <- Minus

LP05929.hyp Sequence

Translation from 0 to 798

> LP05929.hyp
VAEPPNKKPKKKYRNKMMQPRLVILGLIGLTAVGMCHAQGRIMGGEDADA
TATTFTASLRVDNAHVCGGSILSQTKILTTAHCVHRDGKLIDASRLACRV
GSTNQYAGGKIVNVESVAVHPDYYNLNNNLAVITLSSELTYTDRITAIPL
VASGEALPAEGSEVIVAGWGRTSDGTNSYKIRQISLKVAPEATCLDAYSD
HDEQSFCLAHELKEGTCHGDGGGGAIYGNTLIGLTNFVVGACGSRYPDVF
VRLSSYADWIQEQIA*

LP05929.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
spheroide-PA 249 CG9675-PA 1..249 17..265 1296 100 Plus
CG9673-PB 261 CG9673-PB 1..257 17..261 464 42.8 Plus
CG9673-PA 261 CG9673-PA 1..257 17..261 464 42.8 Plus
Ser6-PA 259 CG2071-PA 30..255 40..262 386 38 Plus
CG9672-PA 253 CG9672-PA 7..251 25..264 384 37.2 Plus

LP05929.pep Sequence

Translation from 49 to 798

> LP05929.pep
MMQPRLVILGLIGLTAVGMCHAQGRIMGGEDADATATTFTASLRVDNAHV
CGGSILSQTKILTTAHCVHRDGKLIDASRLACRVGSTNQYAGGKIVNVES
VAVHPDYYNLNNNLAVITLSSELTYTDRITAIPLVASGEALPAEGSEVIV
AGWGRTSDGTNSYKIRQISLKVAPEATCLDAYSDHDEQSFCLAHELKEGT
CHGDGGGGAIYGNTLIGLTNFVVGACGSRYPDVFVRLSSYADWIQEQIA*

LP05929.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22294-PA 248 GF22294-PA 1..248 2..249 914 68.1 Plus
Dana\GF22292-PA 271 GF22292-PA 1..269 1..249 433 38.9 Plus
Dana\GF21864-PA 264 GF21864-PA 34..258 24..244 395 40.1 Plus
Dana\GF22291-PA 252 GF22291-PA 6..251 8..248 390 34.8 Plus
Dana\GF22295-PA 255 GF22295-PA 31..252 25..247 372 38.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18231-PA 249 GG18231-PA 1..249 1..249 1091 85.9 Plus
Dere\GG18230-PA 260 GG18230-PA 26..256 23..245 435 42.4 Plus
Dere\GG18229-PA 252 GG18229-PA 7..251 9..248 403 37.1 Plus
Dere\GG18232-PA 251 GG18232-PA 8..248 6..247 359 33.2 Plus
Dere\GG17565-PA 260 GG17565-PA 29..256 23..247 359 35.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12386-PA 254 GH12386-PA 26..252 23..248 773 62.6 Plus
Dgri\GH12384-PA 235 GH12384-PA 7..234 23..248 362 35.9 Plus
Dgri\GH24521-PA 256 GH24521-PA 1..251 1..245 360 34.1 Plus
Dgri\GH12388-PA 269 GH12388-PA 39..260 25..245 340 36 Plus
Dgri\GH12394-PA 251 GH12394-PA 2..251 4..248 331 33.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
sphe-PA 249 CG9675-PA 1..249 1..249 1296 100 Plus
CG9673-PB 261 CG9673-PB 1..257 1..245 464 42.8 Plus
CG9673-PA 261 CG9673-PA 1..257 1..245 464 42.8 Plus
Ser6-PA 259 CG2071-PA 30..255 24..246 386 38 Plus
CG9672-PA 253 CG9672-PA 7..251 9..248 384 37.2 Plus
CG9676-PA 251 CG9676-PA 8..248 6..247 366 34.4 Plus
CG1304-PA 260 CG1304-PA 30..254 24..245 366 36.8 Plus
betaTry-PB 253 CG18211-PB 29..249 24..244 306 31.9 Plus
betaTry-PA 253 CG18211-PA 29..249 24..244 306 31.9 Plus
Send1-PA 255 CG17012-PA 29..243 25..248 298 31.6 Plus
alphaTry-PA 256 CG18444-PA 11..249 7..244 297 31.2 Plus
CG32523-PA 262 CG32523-PA 36..259 25..247 296 33 Plus
lambdaTry-PA 272 CG12350-PA 34..261 24..249 295 31.2 Plus
epsilonTry-PA 256 CG18681-PA 29..250 24..245 292 30.1 Plus
CG4653-PA 254 CG4653-PA 31..251 32..246 289 31.2 Plus
Ser8-PA 260 CG4812-PA 33..253 24..244 287 30.3 Plus
gammaTry-PA 253 CG30028-PA 29..249 24..244 286 30.6 Plus
CG30025-PA 253 CG30025-PA 29..249 24..244 286 30.6 Plus
deltaTry-PA 253 CG12351-PA 29..249 24..244 286 30.6 Plus
CG30031-PA 253 CG30031-PA 29..249 24..244 286 30.6 Plus
CG17571-PB 258 CG17571-PB 4..251 7..244 283 31 Plus
CG17571-PA 258 CG17571-PA 4..251 7..244 283 31 Plus
CG31269-PB 273 CG31269-PB 7..256 6..245 279 31.3 Plus
etaTry-PA 262 CG12386-PA 9..257 6..247 263 28.2 Plus
CG16749-PA 265 CG16749-PA 15..259 14..246 262 29.7 Plus
CG11192-PB 279 CG11192-PB 10..263 8..248 262 25.9 Plus
Ser12-PA 245 CG17240-PA 6..242 6..248 261 29.1 Plus
iotaTry-PA 252 CG7754-PA 10..245 8..244 261 28.3 Plus
Send2-PA 239 CG18125-PA 3..229 2..248 260 27.5 Plus
CG7542-PB 270 CG7542-PB 5..264 11..248 259 30.9 Plus
CG7542-PA 270 CG7542-PA 5..264 11..248 259 30.9 Plus
CG17234-PA 251 CG17234-PA 7..248 6..249 258 30.2 Plus
CG17239-PB 248 CG17239-PB 23..237 25..244 256 30.5 Plus
CG17239-PA 248 CG17239-PA 23..237 25..244 256 30.5 Plus
CG31954-PA 277 CG31954-PA 49..273 24..246 254 29.4 Plus
thetaTry-PA 262 CG12385-PA 19..255 10..244 253 27.5 Plus
CG13430-PB 267 CG13430-PB 30..263 24..248 253 27.7 Plus
CG13430-PA 267 CG13430-PA 30..263 24..248 253 27.7 Plus
Try29F-PD 267 CG9564-PD 40..261 24..244 253 30.9 Plus
Try29F-PC 267 CG9564-PC 40..261 24..244 253 30.9 Plus
kappaTry-PC 263 CG12388-PC 5..258 7..249 251 29.8 Plus
CG17477-PA 267 CG17477-PA 27..252 26..249 250 27.5 Plus
CG12951-PA 265 CG12951-PA 9..258 6..245 249 28.7 Plus
CG32374-PA 299 CG32374-PA 73..294 25..246 246 27.3 Plus
CG4271-PA 242 CG4271-PA 19..233 26..246 244 28.3 Plus
CG5246-PA 272 CG5246-PA 33..265 17..248 244 30.2 Plus
CG8299-PA 260 CG8299-PA 5..255 9..247 239 27.4 Plus
CG31265-PA 266 CG31265-PA 35..259 24..249 238 28.2 Plus
CG4053-PB 265 CG4053-PB 34..254 25..245 236 30.9 Plus
CG32269-PB 332 CG32269-PB 106..324 23..243 235 29.4 Plus
CG7829-PA 253 CG7829-PA 27..247 25..246 234 27.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15880-PA 255 GI15880-PA 13..253 9..248 802 61 Plus
Dmoj\GI15879-PA 258 GI15879-PA 8..253 6..244 464 41.3 Plus
Dmoj\GI15881-PA 254 GI15881-PA 15..251 14..247 422 39.2 Plus
Dmoj\GI15878-PA 251 GI15878-PA 22..250 23..248 348 32.3 Plus
Dmoj\GI14724-PA 252 GI14724-PA 27..252 25..248 337 33.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26773-PA 228 GL26773-PA 21..228 20..249 744 62.1 Plus
Dper\GL26772-PA 261 GL26772-PA 19..257 17..245 479 45.2 Plus
Dper\GL26774-PA 255 GL26774-PA 28..252 22..247 373 38.2 Plus
Dper\GL26771-PA 253 GL26771-PA 22..252 23..248 356 33.3 Plus
Dper\GL17338-PA 256 GL17338-PA 29..251 24..246 277 29.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23050-PA 252 GA23050-PA 1..252 1..249 894 65.9 Plus
Dpse\GA21955-PA 261 GA21955-PA 19..257 17..245 478 44.8 Plus
Dpse\GA21958-PA 255 GA21958-PA 28..252 22..247 367 37.7 Plus
Dpse\GA21954-PA 253 GA21954-PA 22..252 23..248 357 32.9 Plus
Dpse\GA18331-PA 249 GA18331-PA 25..249 32..249 294 32.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13374-PA 249 GM13374-PA 1..249 1..249 1193 92.4 Plus
Dsec\GM13373-PA 261 GM13373-PA 26..257 23..245 462 44.6 Plus
Dsec\GM22650-PA 259 GM22650-PA 29..256 23..247 361 37.7 Plus
Dsec\GM13375-PA 251 GM13375-PA 8..248 6..247 351 34.4 Plus
Dsec\GM22649-PA 260 GM22649-PA 29..256 23..247 334 36.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15729-PA 249 GD15729-PA 1..249 1..249 1146 93.2 Plus
Dsim\GD15728-PA 261 GD15728-PA 26..257 23..245 466 44.6 Plus
Dsim\GD15727-PA 252 GD15727-PA 7..251 9..248 384 37.6 Plus
Dsim\GD15519-PA 259 GD15519-PA 29..256 23..247 363 37.2 Plus
Dsim\GD15730-PA 251 GD15730-PA 8..248 6..247 356 34.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18707-PA 252 GJ18707-PA 24..250 23..248 789 63.9 Plus
Dvir\GJ18705-PA 262 GJ18705-PA 25..258 23..245 476 41.7 Plus
Dvir\GJ18708-PA 253 GJ18708-PA 1..247 1..244 407 37.6 Plus
Dvir\GJ18895-PA 256 GJ18895-PA 1..250 7..245 370 35.2 Plus
Dvir\GJ18704-PA 236 GJ18704-PA 7..235 23..248 360 33.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25505-PA 254 GK25505-PA 13..253 9..249 827 63.1 Plus
Dwil\GK25504-PA 260 GK25504-PA 23..257 23..245 429 41.3 Plus
Dwil\GK25506-PA 256 GK25506-PA 22..253 19..247 378 35.7 Plus
Dwil\GK25503-PA 252 GK25503-PA 7..251 11..248 378 35.1 Plus
Dwil\GK20044-PA 258 GK20044-PA 28..255 23..247 319 35.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15650-PA 249 GE15650-PA 1..249 1..249 1070 81.5 Plus
Dyak\GE15649-PA 265 GE15649-PA 1..261 1..245 458 41.6 Plus
Dyak\GE15648-PA 252 GE15648-PA 5..251 7..248 415 36.8 Plus
Dyak\GE15326-PA 259 GE15326-PA 29..256 23..247 383 36.8 Plus
Dyak\GE15325-PA 260 GE15325-PA 29..256 23..247 366 37.2 Plus