Clone LP06072 Report

Search the DGRC for LP06072

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:60
Well:72
Vector:pOT2
Associated Gene/TranscriptCG5770-RA
Protein status:LP06072.pep: gold
Preliminary Size:1044
Sequenced Size:915

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5770 2001-01-01 Release 2 assignment
CG5770 2002-01-03 Blastp of sequenced clone
CG5770 2003-01-01 Sim4 clustering to Release 3
CG5770 2008-04-29 Release 5.5 accounting
CG5770 2008-08-15 Release 5.9 accounting
CG5770 2008-12-18 5.12 accounting

Clone Sequence Records

LP06072.complete Sequence

915 bp (915 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075434

> LP06072.complete
GAATAACCGTCAACATGAATATTCTGTGCACCGTGCTTATCTTCGCCAGC
GTTTTGGCGGCCAACGCCAAGCCCAATAACCAGATCCAGAGTGCCTTGGA
TCAGTATTTGGTGCATGCTCGCAGTCTGGATACATTTGTTTCCGAGGATA
TGACCACGCAGTGCTTCAACTTATACATGCCTATGCTGAATCAAGTGGCT
GCCACTTTCTCGAGTTCCTATCAGGACTGCATCACCACCGCCAATGCCCA
GATCGCCAATTTGACCGCCCAGGCGGAGCAGCAGCAGAAGACCTATCAGT
CCGACGTTTCAACACTCTGCAGTGCCTTTACCGCCTGCGACAGCAACAAT
GATACCGCAAACTTCTTCAACTGCTACGCGAATGCTGCTGATAATGACGT
CTCTGTGATCTACAACCTGGCCAGCAACGCTGCCAGCTCGGCCACCTCCT
TCAGCTCGGGCATCCAAGCCATCCAGGACACCGAGTACCAGTGCACCAAC
ACAACGCAGAACAACTACGTCCGGGATACAGCTGCCACCTACGATCTGCT
GGACAATTGCCTCAAGAATGGAGTGCCCACCACTACCGCCACATCCTCAT
CAGCCGCCCCTCAAACTACCTCTACCACAGACGGGGGTTTCCTATTTGGC
CTTTGAGTAGTTAGCATTCGAAACTTTAACATATTCTAATCCATAAAAAC
TTGTATCGTTCAGTAATTTTTTAAACCAAACAAAAGAAAACAAATAATTC
AATTATATTGCCAAATTCACAGTAGCTTGGTTTTATACTGCAGACATCGC
CAATTGAAATCTTAACATAATCAATTTTGTTTCAGATGAAATTTTAAAAA
CGAAGTGATCAGTGAAATAAAGTCGCATTGGTTTCAGTCGTTTAGTTAAA
AAAAAAAAAAAAAAA

LP06072.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5770-RA 1057 CG5770-RA 67..964 1..898 4490 100 Plus
CG5770.a 1253 CG5770.a 263..1160 1..898 4490 100 Plus
CG5767-RA 1166 CG5767-RA 368..864 87..583 1195 82.6 Plus
CG5767-RA 1166 CG5767-RA 281..352 6..77 240 88.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13931189..13931699 897..387 2540 99.8 Minus
chr2R 21145070 chr2R 13931762..13932083 387..66 1535 98.4 Minus
chr2R 21145070 chr2R 13934121..13934419 385..87 655 81.3 Minus
chr2R 21145070 chr2R 13933742..13933930 583..395 510 84.7 Minus
chr2R 21145070 chr2R 13932138..13932203 66..1 300 97 Minus
chr2R 21145070 chr2R 13934510..13934570 66..6 185 86.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:50:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18044045..18044556 898..387 2560 100 Minus
2R 25286936 2R 18044619..18044940 387..66 1610 100 Minus
2R 25286936 2R 18047002..18047300 385..87 670 81.6 Minus
2R 25286936 2R 18046623..18046811 583..395 540 85.7 Minus
2R 25286936 2R 18044995..18045060 66..1 330 100 Minus
2R 25286936 2R 18047391..18047451 66..6 185 86.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18045244..18045755 898..387 2560 100 Minus
2R 25260384 2R 18045818..18046139 387..66 1610 100 Minus
2R 25260384 2R 18048201..18048499 385..87 670 81.6 Minus
2R 25260384 2R 18047822..18048010 583..395 540 85.7 Minus
2R 25260384 2R 18046194..18046259 66..1 330 100 Minus
2R 25260384 2R 18048590..18048650 66..6 185 86.8 Minus
Blast to na_te.dros performed 2019-03-16 11:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 5148..5233 770..681 124 64.4 Minus
TAHRE 10463 TAHRE OSV 10463bp 8489..8527 728..765 111 79.5 Plus
accord 7404 accord ACCORD 7404bp 4905..4949 705..749 108 71.1 Plus

LP06072.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:17:31 Download gff for LP06072.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13931189..13931699 387..897 99 <- Minus
chr2R 13931763..13932083 66..386 98 <- Minus
chr2R 13932139..13932203 1..65 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:37:14 Download gff for LP06072.complete
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 1..642 15..656 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:56:06 Download gff for LP06072.complete
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 1..642 15..656 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:13:49 Download gff for LP06072.complete
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 1..642 15..656 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:20:58 Download gff for LP06072.complete
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 1..642 15..656 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:24 Download gff for LP06072.complete
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 1..642 15..656 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:20:10 Download gff for LP06072.complete
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 1..897 1..897 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:56:06 Download gff for LP06072.complete
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 1..897 1..897 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:13:49 Download gff for LP06072.complete
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 16..912 1..897 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:20:58 Download gff for LP06072.complete
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 1..897 1..897 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:24 Download gff for LP06072.complete
Subject Subject Range Query Range Percent Splice Strand
CG5770-RA 14..910 1..897 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:31 Download gff for LP06072.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18044046..18044556 387..897 100 <- Minus
2R 18044620..18044940 66..386 100 <- Minus
2R 18044996..18045060 1..65 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:31 Download gff for LP06072.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18044046..18044556 387..897 100 <- Minus
2R 18044620..18044940 66..386 100 <- Minus
2R 18044996..18045060 1..65 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:31 Download gff for LP06072.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18044046..18044556 387..897 100 <- Minus
2R 18044620..18044940 66..386 100 <- Minus
2R 18044996..18045060 1..65 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:13:49 Download gff for LP06072.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13931551..13932061 387..897 100 <- Minus
arm_2R 13932125..13932445 66..386 100 <- Minus
arm_2R 13932501..13932565 1..65 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:55:37 Download gff for LP06072.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18045245..18045755 387..897 100 <- Minus
2R 18045819..18046139 66..386 100 <- Minus
2R 18046195..18046259 1..65 100   Minus

LP06072.hyp Sequence

Translation from 2 to 655

> LP06072.hyp
ITVNMNILCTVLIFASVLAANAKPNNQIQSALDQYLVHARSLDTFVSEDM
TTQCFNLYMPMLNQVAATFSSSYQDCITTANAQIANLTAQAEQQQKTYQS
DVSTLCSAFTACDSNNDTANFFNCYANAADNDVSVIYNLASNAASSATSF
SSGIQAIQDTEYQCTNTTQNNYVRDTAATYDLLDNCLKNGVPTTTATSSS
AAPQTTSTTDGGFLFGL*

LP06072.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5770-PA 213 CG5770-PA 1..213 5..217 1091 100 Plus
CG5767-PA 253 CG5767-PA 1..204 5..210 800 75 Plus
CG10911-PA 359 CG10911-PA 5..207 8..210 259 26.2 Plus
CG34005-PC 185 CG34005-PC 5..180 11..188 208 27.9 Plus
CG34005-PB 185 CG34005-PB 5..180 11..188 208 27.9 Plus

LP06072.pep Sequence

Translation from 14 to 655

> LP06072.pep
MNILCTVLIFASVLAANAKPNNQIQSALDQYLVHARSLDTFVSEDMTTQC
FNLYMPMLNQVAATFSSSYQDCITTANAQIANLTAQAEQQQKTYQSDVST
LCSAFTACDSNNDTANFFNCYANAADNDVSVIYNLASNAASSATSFSSGI
QAIQDTEYQCTNTTQNNYVRDTAATYDLLDNCLKNGVPTTTATSSSAAPQ
TTSTTDGGFLFGL*

LP06072.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13211-PA 249 GF13211-PA 1..199 1..197 728 71.9 Plus
Dana\GF13208-PA 377 GF13208-PA 5..211 4..203 213 27.1 Plus
Dana\GF22881-PA 228 GF22881-PA 57..201 47..192 185 29.5 Plus
Dana\GF11688-PA 135 GF11688-PA 1..130 55..184 155 26.2 Plus
Dana\GF24864-PA 250 GF24864-PA 61..194 50..183 146 24.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21002-PA 211 GG21002-PA 1..211 1..213 853 85.9 Plus
Dere\GG21000-PA 300 GG21000-PA 1..189 1..187 739 74.1 Plus
Dere\GG20997-PA 383 GG20997-PA 5..199 1..198 233 26.3 Plus
Dere\GG21837-PA 184 GG21837-PA 3..179 6..184 196 28.5 Plus
Dere\GG12013-PA 233 GG12013-PA 17..203 8..191 180 31.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20454-PA 246 GH20454-PA 1..210 1..203 633 61.1 Plus
Dgri\GH20448-PA 278 GH20448-PA 5..192 4..193 224 25.8 Plus
Dgri\GH21443-PA 174 GH21443-PA 27..173 47..193 202 30.6 Plus
Dgri\GH20451-PA 184 GH20451-PA 17..173 45..201 194 25.5 Plus
Dgri\GH20449-PA 205 GH20449-PA 38..194 45..201 184 24.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5770-PA 213 CG5770-PA 1..213 1..213 1091 100 Plus
CG5767-PA 253 CG5767-PA 1..204 1..206 800 75 Plus
CG10911-PA 359 CG10911-PA 5..207 4..206 259 26.2 Plus
CG34005-PC 185 CG34005-PC 5..180 7..184 208 27.9 Plus
CG34005-PB 185 CG34005-PB 5..180 7..184 208 27.9 Plus
Muc55B-PB 485 CG5765-PB 6..215 3..206 205 25.2 Plus
Muc55B-PA 485 CG5765-PA 6..215 3..206 205 25.2 Plus
CG16762-PA 254 CG16762-PA 41..227 25..206 204 26.7 Plus
CG11470-PB 230 CG11470-PB 8..216 7..205 199 27.5 Plus
CG11470-PA 230 CG11470-PA 8..216 7..205 199 27.5 Plus
CG10912-PA 271 CG10912-PA 48..210 46..204 173 25.8 Plus
CG7567-PA 211 CG7567-PA 6..205 2..196 163 22.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19281-PA 230 GI19281-PA 1..205 1..204 605 60.5 Plus
Dmoj\GI20246-PA 186 GI20246-PA 23..185 23..189 220 28.1 Plus
Dmoj\GI19278-PA 253 GI19278-PA 49..203 50..202 213 29.7 Plus
Dmoj\GI24461-PA 231 GI24461-PA 7..205 3..201 178 27.2 Plus
Dmoj\GI24462-PA 213 GI24462-PA 8..212 6..211 174 25.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10543-PA 256 GL10543-PA 1..198 1..199 679 66.8 Plus
Dper\GL11526-PA 186 GL11526-PA 41..181 44..184 189 29.1 Plus
Dper\GL24611-PA 258 GL24611-PA 65..198 50..183 174 26.9 Plus
Dper\GL10540-PA 356 GL10540-PA 7..200 7..201 173 25.3 Plus
Dper\GL13587-PA 220 GL13587-PA 50..208 47..206 170 26.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19113-PA 256 GA19113-PA 1..198 1..199 672 66.3 Plus
Dpse\GA24760-PA 186 GA24760-PA 41..181 44..184 187 29.1 Plus
Dpse\GA14134-PA 258 GA14134-PA 65..198 50..183 174 26.9 Plus
Dpse\GA26834-PA 218 GA26834-PA 50..213 47..209 162 26.1 Plus
Dpse\GA10635-PA 372 GA10635-PA 7..200 7..201 158 24.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19935-PA 212 GM19935-PA 1..212 1..213 934 93.4 Plus
Dsec\GM19934-PA 253 GM19934-PA 1..189 1..187 724 76.2 Plus
Dsec\GM19931-PA 366 GM19931-PA 5..197 4..196 221 27 Plus
Dsec\GM21839-PA 189 GM21839-PA 22..186 19..185 181 29.8 Plus
Dsec\GM19932-PA 377 GM19932-PA 56..215 50..207 176 29.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25424-PA 212 GD25424-PA 1..212 1..213 1010 93.4 Plus
Dsim\GD25423-PA 253 GD25423-PA 1..189 1..187 732 77.2 Plus
Dsim\GD25420-PA 381 GD25420-PA 5..197 4..196 225 26 Plus
Dsim\GD11333-PA 190 GD11333-PA 9..185 6..184 179 27.4 Plus
Dsim\GD17726-PA 236 GD17726-PA 17..218 8..207 174 28.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22158-PA 248 GJ22158-PA 1..203 1..202 634 66.3 Plus
Dvir\GJ22155-PA 276 GJ22155-PA 1..187 1..188 232 28.6 Plus
Dvir\GJ20200-PA 187 GJ20200-PA 13..177 32..184 191 29.1 Plus
Dvir\GJ10551-PA 211 GJ10551-PA 18..201 10..196 182 28.4 Plus
Dvir\GJ16053-PA 252 GJ16053-PA 59..196 50..187 165 26.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22063-PA 185 GK22063-PA 1..133 57..189 500 76.7 Plus
Dwil\GK22059-PA 340 GK22059-PA 5..184 4..189 208 28 Plus
Dwil\GK22242-PA 168 GK22242-PA 25..163 47..185 196 28.1 Plus
Dwil\GK11180-PA 229 GK11180-PA 55..203 44..191 153 27.3 Plus
Dwil\GK22061-PA 670 GK22061-PA 15..209 9..202 151 24.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13945-PA 211 GE13945-PA 1..211 1..213 806 85.9 Plus
Dyak\GE13943-PA 274 GE13943-PA 1..189 1..187 748 74.6 Plus
Dyak\GE13940-PA 406 GE13940-PA 5..189 4..188 213 23.4 Plus
Dyak\GE11916-PA 184 GE11916-PA 3..179 6..184 187 27.4 Plus
Dyak\GE10449-PA 225 GE10449-PA 28..199 19..187 170 30.9 Plus