Clone LP06106 Report

Search the DGRC for LP06106

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:61
Well:6
Vector:pOT2
Associated Gene/TranscriptCG1850-RA
Protein status:LP06106.pep: gold
Sequenced Size:2406

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1850-RA 2009-04-27 Manual selection by Ken Wan

Clone Sequence Records

LP06106.complete Sequence

2406 bp assembled on 2009-09-22

GenBank Submission: BT099814.1

> LP06106.complete
AGTAGTCGAAGTTGTAGCGAAGTTTTGGAGCACCCAGAGTTCCAGAAGTC
CTACCAGTCGCTACCCAAAGTCAAACCCAACGAGTTGAAAGCAACCCAAG
CACAGCAAGATGCGGCTATTTCTGATCGGCTTGCTGGCCCTGGGTTCCGC
GAGGGCCTTCTCTGTGATCCGCACCCAGCCGCATCCGCAGCTGGTGGCCT
ACGCTCCGGCCAGAGGCGAGTTCCCAGTGGTGAGTGGCCTAGCCCAGGGC
TACGTCCGCTACTACGATGGCACCGGAGCAGAGCGACTGCTGCCTTACAA
CTACCCGGAACCGCTGAACGGCATCCGGGATCTGTCCACCTCTAGTCTAG
TCCGCTCCGGTGAGGAGCAAGAGAGCCAACAGATCGCTCTGTTCCGTGCC
TGGTGCGAGCAGCGCTACCAGGCCATGCGCGTAGAACTGGATCGCCTGAA
GGCCCAGGGCCTGAAACCCACACCCAGCATGCTGGCTCAGTTCGAGCCTC
TGGAGCAGATCGTCAAGTTTTCCGCCTTCGAAGCCGTTCCCGGACTGACC
CCGGAGGTCCAGCGCGCCCGGGATGAGCAGCTACGCATCTGGAACGAGGC
CAGGCTGGAGGTGCTGCGCGCCGAACAGGCTCAGCAGCTGCTCGGCCAGT
CCCCGGAGTACCAGTACGAGAAGGAAAAGATCCCTGTCATGTACGCCCAG
CCTATGCAGCAGCAGATTGTTCCATACCAGGAGAACATATTGATCAAAAC
CACCACTCAAGATGCGCCTCAACCCATTGAGGAGACACCGGAAGTGAAAT
TGGCCCGCCAGGAACATCTGAAGCAGTTCAACGAGGCCCTCCTCCGGCAG
CCTGCCCAGGAAGCCATCATCCTTAAAGCCGTTCCTGGAATTAAGCAGCC
AATCGCGAGCCAGCCTCAGCCGATCATCAAGAGCACCACAACCATCTTTG
AGACCCAGCCAGCTGCCCAACCCCAGGGAATATTCCAGAGGGGCAGCTTC
ACAGATCAGCAGACCCCACAGCCCATCGACGAAACTCCAGAAGTGAAAAA
AGCTCGCGAGGAGCACCTCAAGCTGTTCAATGAGGCCTTGCTCCGTCAAA
CTACTGCCCCCGCAGAACCCACTCTTAAGGCGACGACCACTAAGAACGAT
CAGCCCCAAGCATTCACCTTCCCAGAAAAAAAAGCTCCTCAACCTATCCA
GGAAACTCCAGAGGTCGTGCGCGCTCGGGAGGAGCATCTGAAGCAGTTCA
ACGAGGCCATCCTGCGGCAGCCAGTCGACATCCAACAACAGCCCCTGATT
GCAACCGCACCGTTTGCTCCTCAACCCATTTTTAAGAGCCCCATTGCCGA
GGTACCACAGCCCGTCCAGGACACTCCGGAAGTCAAGCTGGCACGTGAGC
AGCACCTGCTGCTACTCAACCAAGCGAAAGTACAGGCCGAGGACAAGGTG
GCCGACATTGCCGACATGATCCGATTGGAGGAGCGCGAGCAGGAGAAGGA
GCGTCTGCAGGAGCTGGAACTGCGCAAGCAGGAGGAGAAGGAAGCCGAAA
TGGAACGCCAGAAGGAGGCAGATCGTCGGCTCGAGGAAACCCGCATTCTG
GAGGCCGAGCGTCTAAAGATCGAGCAAGAAGATCGCCAGCGGTTGGAGAG
TGAAAAGCAGGAGCTCCTCCAGTTGAAGGCCACCTCCGCAGCCACCGTAC
CCGAGAAGGACACTCCTGAATATCTGCGCAAGGCGGAGCAGTTCAAGATC
ATCAACAACCAGGTGCAGCCCCAGCAGCAGCCCAACATCGTGACCCAGCA
GCAGCAAGTGCAAAATGGCTTCTTCCTGCGCATCCAAACCAACCAGCCCA
ACGCCATCCAGCCATCCACGGTCCCAGTGAGCACTCCTGCCCTAGTTCTA
GCCGAGCCGGGCTCCAATCCCTTCCTGGTTCGATACACCACCAAGTCAGC
AGCGCGGCCGCTTCCTCTGCAGACGCTTCAGCCCCTGCCCACTCCCATTG
CCTCCGAATTGAAGCAGCAGGTCACATACAGCTCCACGTCGTCCAGTGAA
CTGGACAAAGCCACCCGGGAGCACTTCCGCGCCCACGAGATCGCCCTGGA
GCAGCTGCGTCTGGCCAACCTGCGGAATCCCTGGACCCCCGACTGCCAGC
ACTAGGAAGCTGGAAGGCCCTCCTCCGTCCGAAAACCCCCGTATCCGAGC
ACGAATTCGAATCACTTGCATTGCCCTAGGTTAGATCACATGCCCACATC
TCCTCAAACACAACACGTAAATCCATAACACCCCTCATAGGTACTCATAC
TCATACTCGTACACCTGTATACATAGCTTGGCTATTCACGCCGTCTCCCG
ATTCAAAATGCATTCAGTTGAGAAACAACGCAAAAAAAAAAAAAAAAAAA
AAAAAA

LP06106.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1850-RA 2385 CG1850-RA 5..2385 1..2381 11905 100 Plus
CG1850.a 1836 CG1850.a 5..1685 1..1681 8405 100 Plus
CG1850.b 1965 CG1850.b 814..1965 1230..2381 5745 99.9 Plus
CG1850.b 1965 CG1850.b 5..856 1..852 4230 99.7 Plus
CG1850.a 1836 CG1850.a 1743..1836 2288..2381 470 100 Plus
CG1850.a 1836 CG1850.a 1679..1747 2163..2231 345 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3146229..3148609 2381..1 11890 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:50:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7258863..7261247 2385..1 11925 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7260062..7262446 2385..1 11925 100 Minus
Blast to na_te.dros performed 2019-03-16 21:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6964 1608..1855 126 55.2 Plus

LP06106.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:34:22 Download gff for LP06106.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3146229..3148609 1..2381 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:55:11 Download gff for LP06106.complete
Subject Subject Range Query Range Percent Splice Strand
CG1850-RA 1..2046 110..2155 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:32:55 Download gff for LP06106.complete
Subject Subject Range Query Range Percent Splice Strand
CG1850-RA 1..2046 110..2155 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:57:11 Download gff for LP06106.complete
Subject Subject Range Query Range Percent Splice Strand
CG1850-RA 1..2046 110..2155 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:18 Download gff for LP06106.complete
Subject Subject Range Query Range Percent Splice Strand
CG1850-RA 1..2046 110..2155 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-22 13:20:28 Download gff for LP06106.complete
Subject Subject Range Query Range Percent Splice Strand
CG1850-RA 5..2159 1..2155 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:32:55 Download gff for LP06106.complete
Subject Subject Range Query Range Percent Splice Strand
CG1850-RA 5..2385 1..2381 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:11 Download gff for LP06106.complete
Subject Subject Range Query Range Percent Splice Strand
CG1850-RA 23..2403 1..2381 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:18 Download gff for LP06106.complete
Subject Subject Range Query Range Percent Splice Strand
CG1850-RA 23..2403 1..2381 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:22 Download gff for LP06106.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7258867..7261247 1..2381 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:22 Download gff for LP06106.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7258867..7261247 1..2381 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:22 Download gff for LP06106.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7258867..7261247 1..2381 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:11 Download gff for LP06106.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3146372..3148752 1..2381 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:17:20 Download gff for LP06106.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7260066..7262446 1..2381 100   Minus

LP06106.hyp Sequence

Translation from 109 to 2154

> LP06106.hyp
MRLFLIGLLALGSARAFSVIRTQPHPQLVAYAPARGEFPVVSGLAQGYVR
YYDGTGAERLLPYNYPEPLNGIRDLSTSSLVRSGEEQESQQIALFRAWCE
QRYQAMRVELDRLKAQGLKPTPSMLAQFEPLEQIVKFSAFEAVPGLTPEV
QRARDEQLRIWNEARLEVLRAEQAQQLLGQSPEYQYEKEKIPVMYAQPMQ
QQIVPYQENILIKTTTQDAPQPIEETPEVKLARQEHLKQFNEALLRQPAQ
EAIILKAVPGIKQPIASQPQPIIKSTTTIFETQPAAQPQGIFQRGSFTDQ
QTPQPIDETPEVKKAREEHLKLFNEALLRQTTAPAEPTLKATTTKNDQPQ
AFTFPEKKAPQPIQETPEVVRAREEHLKQFNEAILRQPVDIQQQPLIATA
PFAPQPIFKSPIAEVPQPVQDTPEVKLAREQHLLLLNQAKVQAEDKVADI
ADMIRLEEREQEKERLQELELRKQEEKEAEMERQKEADRRLEETRILEAE
RLKIEQEDRQRLESEKQELLQLKATSAATVPEKDTPEYLRKAEQFKIINN
QVQPQQQPNIVTQQQQVQNGFFLRIQTNQPNAIQPSTVPVSTPALVLAEP
GSNPFLVRYTTKSAARPLPLQTLQPLPTPIASELKQQVTYSSTSSSELDK
ATREHFRAHEIALEQLRLANLRNPWTPDCQH*

LP06106.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1850-PA 681 CG1850-PA 1..681 1..681 3452 100 Plus
ptip-PA 2294 CG32133-PA 776..1361 62..665 197 19.2 Plus

LP06106.pep Sequence

Translation from 109 to 2154

> LP06106.pep
MRLFLIGLLALGSARAFSVIRTQPHPQLVAYAPARGEFPVVSGLAQGYVR
YYDGTGAERLLPYNYPEPLNGIRDLSTSSLVRSGEEQESQQIALFRAWCE
QRYQAMRVELDRLKAQGLKPTPSMLAQFEPLEQIVKFSAFEAVPGLTPEV
QRARDEQLRIWNEARLEVLRAEQAQQLLGQSPEYQYEKEKIPVMYAQPMQ
QQIVPYQENILIKTTTQDAPQPIEETPEVKLARQEHLKQFNEALLRQPAQ
EAIILKAVPGIKQPIASQPQPIIKSTTTIFETQPAAQPQGIFQRGSFTDQ
QTPQPIDETPEVKKAREEHLKLFNEALLRQTTAPAEPTLKATTTKNDQPQ
AFTFPEKKAPQPIQETPEVVRAREEHLKQFNEAILRQPVDIQQQPLIATA
PFAPQPIFKSPIAEVPQPVQDTPEVKLAREQHLLLLNQAKVQAEDKVADI
ADMIRLEEREQEKERLQELELRKQEEKEAEMERQKEADRRLEETRILEAE
RLKIEQEDRQRLESEKQELLQLKATSAATVPEKDTPEYLRKAEQFKIINN
QVQPQQQPNIVTQQQQVQNGFFLRIQTNQPNAIQPSTVPVSTPALVLAEP
GSNPFLVRYTTKSAARPLPLQTLQPLPTPIASELKQQVTYSSTSSSELDK
ATREHFRAHEIALEQLRLANLRNPWTPDCQH*

LP06106.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12237-PA 696 GF12237-PA 1..696 1..681 2203 69.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10761-PA 672 GG10761-PA 1..672 1..681 2763 84.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20369-PA 723 GH20369-PA 25..250 28..248 531 50.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1850-PA 681 CG1850-PA 1..681 1..681 3452 100 Plus
Ptip-PA 2294 CG32133-PA 776..1361 62..665 197 19.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20044-PA 642 GI20044-PA 24..318 28..332 592 45.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10943-PA 711 GL10943-PA 1..711 1..681 1886 57.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14963-PA 711 GA14963-PA 1..711 1..681 1890 56.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20807-PA 684 GM20807-PA 1..684 1..681 3231 94.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15313-PA 344 GD15313-PA 1..333 1..333 1669 95.5 Plus
Dsim\GD15313-PA 344 GD15313-PA 95..331 158..388 253 34.5 Plus
Dsim\GD15313-PA 344 GD15313-PA 147..326 309..439 209 37.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21286-PA 611 GJ21286-PA 24..300 28..329 671 50.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21523-PA 615 GK21523-PA 1..615 1..681 1162 46.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24136-PA 663 GE24136-PA 1..663 1..681 2708 83.1 Plus