Clone LP06328 Report

Search the DGRC for LP06328

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:63
Well:28
Vector:pOT2
Associated Gene/TranscriptCG2070-RA
Protein status:LP06328.pep: gold
Preliminary Size:1216
Sequenced Size:1109

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2070 2002-01-01 Sim4 clustering to Release 2
CG2070 2002-05-01 Blastp of sequenced clone
CG2070 2003-01-01 Sim4 clustering to Release 3
CG2070 2008-04-29 Release 5.5 accounting
CG2070 2008-08-15 Release 5.9 accounting
CG2070 2008-12-18 5.12 accounting

Clone Sequence Records

LP06328.complete Sequence

1109 bp (1109 high quality bases) assembled on 2002-05-01

GenBank Submission: AY102695

> LP06328.complete
AGCTGGTAGCATTCGGAGCGGAAAGATGAGTGCACCCACGGATTACCTGT
TCTGCCCGCTGGCATATGGGTCAGCTCTTTCGGCCATCGGAATCTATCTG
CTCCGACAATATATGCAGGGAGGTCAGTTCACCACGAAAACGAATGAGAC
CGGCAGAGTGGCGATTGTGACCGGCTGCAACCAGGGGATTGGCAAGGAGA
CCGTTCTGGAGCTGGCCCGCAGGGGAGCTACCGTGTACATGGCTTGTCGG
GACATGAAGAAGTGCGAGAATGCCCGTCGGGAGATCATCAAAGCGACCAA
CAACCAGAACATCTTCGCACGCCAATTGGACCTGTGCTCCATGAAGTCCA
TTAGGAACTTCGCTGCTGGCTTTAAGCGGGAGCAAAACAAGCTTCACATT
CTTATCAACAACGCCGGCATTATGGACTGCCCCAAAATGCTGACGGAGGA
CGGATTTGAAATGCAAATCGGAGTGAATCACATGGGCCACTTCCTCCTCA
CACTTCTGCTTCTCGATGTCCTGAAGAGTTCCGCGCCCAGTCGCGTTGTG
GTCCTGTCCAGCATTGCTCACCGCTTCGGAAGGATTAAGCGTGACGACCT
GAACAGCGAAAAGTCCTATGACAGAAAGATGGCCTACTGTCAGAGCAAAT
TGGCCAACGTCCTCTTCACCAGGGAGTTGGCGAAACGCCTGAGCGGAACA
GGGGTCACGGTAAATGCCCTACATCCCGGAGTAGTAAACACGGAACTGTT
CCGCAATACACCCTTTTTGGGTTCGTGGTTTGGAAAATTGCTCATAGCCC
CTATTATATGGATATTCATAAAGACGGCTAGGAATGGCGCACAGACGACC
CTGTACGCTGCCCTGGATCCCAGTTTGGAAAAAGTATCTGGAAGATACTT
CAGCGATTGCAAGCAGAAGCACGTGGGCTCGGCCGCCCAGTATGACGATG
ATGCCCAATTCCTATGGGCGGAAAGTGAAAAGTGGACGGGAATTAATATA
TGAGCAACTTTATGACTCTTTTAACTCTTACCCTGTATTGTTGAAATACA
TTTAATAGAATAAGCTAAATGAGCTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA

LP06328.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG2070-RA 1381 CG2070-RA 158..1233 1..1076 5380 100 Plus
CG2070.b 1109 CG2070.b 31..1109 1..1075 5310 99.6 Plus
CG2070.a 1272 CG2070.a 256..1214 118..1076 4795 100 Plus
CG2070.a 1272 CG2070.a 152..256 1..105 525 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3549805..3550222 369..786 2090 100 Plus
chr2R 21145070 chr2R 3550278..3550566 787..1075 1445 100 Plus
chr2R 21145070 chr2R 3549472..3549736 105..369 1325 100 Plus
chr2R 21145070 chr2R 3549319..3549423 1..105 525 100 Plus
chr2R 21145070 chr2R 3551342..3551603 108..369 350 75.6 Plus
chr2R 21145070 chr2R 3551950..3552104 595..749 235 76.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:50:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7662498..7662915 369..786 2090 100 Plus
2R 25286936 2R 7662971..7663260 787..1076 1450 100 Plus
2R 25286936 2R 7662165..7662429 105..369 1325 100 Plus
2R 25286936 2R 7662012..7662116 1..105 525 100 Plus
2R 25286936 2R 7664035..7664296 108..369 350 75.6 Plus
2R 25286936 2R 7664643..7664797 595..749 235 76.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7663697..7664114 369..786 2090 100 Plus
2R 25260384 2R 7664170..7664459 787..1076 1450 100 Plus
2R 25260384 2R 7663364..7663628 105..369 1325 100 Plus
2R 25260384 2R 7663211..7663315 1..105 525 100 Plus
2R 25260384 2R 7665234..7665495 108..369 350 75.5 Plus
2R 25260384 2R 7665879..7665996 632..749 215 78.8 Plus
2R 25260384 2R 7656776..7656865 112..201 180 80 Plus
2R 25260384 2R 7657459..7657515 631..687 180 87.7 Plus
2R 25260384 2R 7667403..7667555 164..316 180 74.5 Plus
2R 25260384 2R 7658615..7658748 110..243 175 75.3 Plus
2R 25260384 2R 7667991..7668040 632..681 160 88 Plus
Blast to na_te.dros performed on 2019-03-15 19:22:57 has no hits.

LP06328.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:23:48 Download gff for LP06328.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3549319..3549423 1..105 100 -> Plus
chr2R 3549473..3549736 106..369 100 -> Plus
chr2R 3549806..3550222 370..786 100 -> Plus
chr2R 3550278..3550566 787..1075 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:37:20 Download gff for LP06328.complete
Subject Subject Range Query Range Percent Splice Strand
CG2070-RA 1..978 26..1003 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:53:42 Download gff for LP06328.complete
Subject Subject Range Query Range Percent Splice Strand
CG2070-RA 1..978 26..1003 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:49:00 Download gff for LP06328.complete
Subject Subject Range Query Range Percent Splice Strand
CG2070-RA 1..978 26..1003 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:46:14 Download gff for LP06328.complete
Subject Subject Range Query Range Percent Splice Strand
CG2070-RA 1..978 26..1003 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:16:07 Download gff for LP06328.complete
Subject Subject Range Query Range Percent Splice Strand
CG2070-RA 1..978 26..1003 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:32:11 Download gff for LP06328.complete
Subject Subject Range Query Range Percent Splice Strand
CG2070-RA 1..1075 1..1075 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:53:42 Download gff for LP06328.complete
Subject Subject Range Query Range Percent Splice Strand
CG2070-RA 1..1075 1..1075 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:49:00 Download gff for LP06328.complete
Subject Subject Range Query Range Percent Splice Strand
CG2070-RA 31..1105 1..1075 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:46:14 Download gff for LP06328.complete
Subject Subject Range Query Range Percent Splice Strand
CG2070-RA 1..1075 1..1075 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:16:07 Download gff for LP06328.complete
Subject Subject Range Query Range Percent Splice Strand
CG2070-RA 31..1105 1..1075 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:23:48 Download gff for LP06328.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7662012..7662116 1..105 100 -> Plus
2R 7662166..7662429 106..369 100 -> Plus
2R 7662499..7662915 370..786 100 -> Plus
2R 7662971..7663259 787..1075 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:23:48 Download gff for LP06328.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7662012..7662116 1..105 100 -> Plus
2R 7662166..7662429 106..369 100 -> Plus
2R 7662499..7662915 370..786 100 -> Plus
2R 7662971..7663259 787..1075 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:23:48 Download gff for LP06328.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7662012..7662116 1..105 100 -> Plus
2R 7662166..7662429 106..369 100 -> Plus
2R 7662499..7662915 370..786 100 -> Plus
2R 7662971..7663259 787..1075 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:49:00 Download gff for LP06328.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3550476..3550764 787..1075 100   Plus
arm_2R 3549517..3549621 1..105 100 -> Plus
arm_2R 3549671..3549934 106..369 100 -> Plus
arm_2R 3550004..3550420 370..786 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:18:45 Download gff for LP06328.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7663365..7663628 106..369 100 -> Plus
2R 7663698..7664114 370..786 100 -> Plus
2R 7664170..7664458 787..1075 100   Plus
2R 7663211..7663315 1..105 100 -> Plus

LP06328.hyp Sequence

Translation from 0 to 1002

> LP06328.hyp
AGSIRSGKMSAPTDYLFCPLAYGSALSAIGIYLLRQYMQGGQFTTKTNET
GRVAIVTGCNQGIGKETVLELARRGATVYMACRDMKKCENARREIIKATN
NQNIFARQLDLCSMKSIRNFAAGFKREQNKLHILINNAGIMDCPKMLTED
GFEMQIGVNHMGHFLLTLLLLDVLKSSAPSRVVVLSSIAHRFGRIKRDDL
NSEKSYDRKMAYCQSKLANVLFTRELAKRLSGTGVTVNALHPGVVNTELF
RNTPFLGSWFGKLLIAPIIWIFIKTARNGAQTTLYAALDPSLEKVSGRYF
SDCKQKHVGSAAQYDDDAQFLWAESEKWTGINI*

LP06328.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG2070-PB 325 CG2070-PB 1..325 9..333 1686 100 Plus
CG2070-PA 325 CG2070-PA 1..325 9..333 1686 100 Plus
CG2064-PA 330 CG2064-PA 6..324 14..332 1106 66.5 Plus
CG2065-PB 300 CG2065-PB 1..295 38..332 1105 71.2 Plus
CG2065-PA 300 CG2065-PA 1..295 38..332 1105 71.2 Plus

LP06328.pep Sequence

Translation from 25 to 1002

> LP06328.pep
MSAPTDYLFCPLAYGSALSAIGIYLLRQYMQGGQFTTKTNETGRVAIVTG
CNQGIGKETVLELARRGATVYMACRDMKKCENARREIIKATNNQNIFARQ
LDLCSMKSIRNFAAGFKREQNKLHILINNAGIMDCPKMLTEDGFEMQIGV
NHMGHFLLTLLLLDVLKSSAPSRVVVLSSIAHRFGRIKRDDLNSEKSYDR
KMAYCQSKLANVLFTRELAKRLSGTGVTVNALHPGVVNTELFRNTPFLGS
WFGKLLIAPIIWIFIKTARNGAQTTLYAALDPSLEKVSGRYFSDCKQKHV
GSAAQYDDDAQFLWAESEKWTGINI*

LP06328.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13190-PA 328 GF13190-PA 6..323 6..323 1164 70.8 Plus
Dana\GF13193-PA 327 GF13193-PA 6..323 6..323 1112 67 Plus
Dana\GF13191-PA 300 GF13191-PA 1..295 30..324 1064 69.2 Plus
Dana\GF13188-PA 331 GF13188-PA 28..323 26..321 1051 65.2 Plus
Dana\GF13192-PA 293 GF13192-PA 5..291 33..323 961 64.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23293-PA 327 GG23293-PA 1..327 1..325 1559 91.1 Plus
Dere\GG23294-PA 329 GG23294-PA 6..324 6..324 1094 65.8 Plus
Dere\GG23292-PA 296 GG23292-PA 1..294 30..323 1020 65.3 Plus
Dere\GG23291-PA 331 GG23291-PA 26..323 24..321 1003 63.8 Plus
Dere\GG19587-PA 405 GG19587-PA 45..353 18..323 786 55.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21882-PA 325 GH21882-PA 6..321 6..321 1075 66.1 Plus
Dgri\GH21880-PA 325 GH21880-PA 6..321 6..321 1068 65.8 Plus
Dgri\GH21876-PA 334 GH21876-PA 24..323 22..321 1029 65 Plus
Dgri\GH21883-PA 573 GH21883-PA 271..568 25..322 989 64.8 Plus
Dgri\GH21881-PA 304 GH21881-PA 25..302 45..321 953 66.5 Plus
Dgri\GH21883-PA 573 GH21883-PA 46..263 27..244 757 68.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG2070-PB 325 CG2070-PB 1..325 1..325 1686 100 Plus
CG2070-PA 325 CG2070-PA 1..325 1..325 1686 100 Plus
CG2064-PA 330 CG2064-PA 6..324 6..324 1106 66.5 Plus
CG2065-PB 300 CG2065-PB 1..295 30..324 1105 71.2 Plus
CG2065-PA 300 CG2065-PA 1..295 30..324 1105 71.2 Plus
CG30491-PB 331 CG30491-PB 26..323 24..321 1017 64.1 Plus
CG30491-PA 331 CG30491-PA 26..323 24..321 1017 64.1 Plus
CG30495-PA 327 CG30495-PA 13..325 11..323 990 61.7 Plus
CG30495-PB 331 CG30495-PB 13..329 11..323 975 60.9 Plus
CG3842-PD 406 CG3842-PD 54..353 23..323 786 55 Plus
CG3842-PC 406 CG3842-PC 54..353 23..323 786 55 Plus
CG3842-PB 406 CG3842-PB 54..353 23..323 786 55 Plus
CG3842-PA 406 CG3842-PA 54..353 23..323 786 55 Plus
CG7675-PD 336 CG7675-PD 28..325 16..319 585 42 Plus
CG7675-PB 336 CG7675-PB 28..325 16..319 585 42 Plus
CG7675-PE 287 CG7675-PE 3..276 43..319 572 43.5 Plus
CG7675-PC 287 CG7675-PC 3..276 43..319 572 43.5 Plus
CG7675-PA 287 CG7675-PA 3..276 43..319 572 43.5 Plus
CG31235-PB 406 CG31235-PB 22..347 17..319 439 36.1 Plus
CG31235-PA 406 CG31235-PA 22..347 17..319 439 36.1 Plus
CG11200-PC 355 CG11200-PC 68..318 44..294 426 39.9 Plus
CG11200-PA 355 CG11200-PA 68..318 44..294 426 39.9 Plus
CG11200-PB 355 CG11200-PB 68..318 44..294 426 39.9 Plus
Wwox-PB 409 CG7221-PB 121..397 43..318 377 36.4 Plus
Wwox-PA 409 CG7221-PA 121..397 43..318 377 36.4 Plus
Ldsdh1-PA 320 CG2254-PA 58..267 43..260 189 25.4 Plus
CG10672-PA 317 CG10672-PA 71..257 43..240 173 28.3 Plus
CG3603-PB 249 CG3603-PB 8..200 43..246 172 27.8 Plus
CG3603-PA 249 CG3603-PA 8..200 43..246 172 27.8 Plus
CG31548-PA 256 CG31548-PA 2..191 40..241 169 26.5 Plus
CG12171-PA 257 CG12171-PA 7..194 44..243 169 27.7 Plus
CG7322-PC 242 CG7322-PC 3..184 39..241 168 32.2 Plus
CG7322-PB 242 CG7322-PB 3..184 39..241 168 32.2 Plus
CG7322-PA 242 CG7322-PA 3..184 39..241 168 32.2 Plus
CG3699-PA 251 CG3699-PA 4..201 42..256 159 27.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20381-PA 417 GI20381-PA 97..411 7..321 1041 65.1 Plus
Dmoj\GI15186-PA 397 GI15186-PA 46..348 20..323 814 56.7 Plus
Dmoj\GI24262-PA 336 GI24262-PA 25..325 13..319 621 42.4 Plus
Dmoj\GI18778-PA 354 GI18778-PA 62..315 41..294 447 39.8 Plus
Dmoj\GI24267-PA 373 GI24267-PA 26..344 21..317 412 33.9 Plus
Dmoj\GI20381-PA 417 GI20381-PA 24..116 22..114 309 62.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11532-PA 327 GL11532-PA 1..323 1..323 1075 65.6 Plus
Dper\GL20020-PA 332 GL20020-PA 28..323 26..321 1026 66.9 Plus
Dper\GL20021-PA 296 GL20021-PA 1..296 30..325 974 62.5 Plus
Dper\GL26852-PA 356 GL26852-PA 54..315 23..323 627 49.3 Plus
Dper\GL23193-PA 336 GL23193-PA 25..329 13..323 570 41.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15218-PA 327 GA15218-PA 1..323 1..323 1068 65 Plus
Dpse\GA15878-PA 332 GA15878-PA 28..323 26..321 1023 66.9 Plus
Dpse\GA15882-PB 324 GA15882-PB 26..324 27..325 986 62.2 Plus
Dpse\GA17725-PA 394 GA17725-PA 54..353 23..323 810 57.3 Plus
Dpse\GA16110-PA 404 GA16110-PA 25..346 20..319 417 35.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20970-PA 325 GM20970-PA 1..325 1..325 1707 97.2 Plus
Dsec\GM20971-PA 300 GM20971-PA 1..295 30..324 1112 71.5 Plus
Dsec\GM20972-PA 330 GM20972-PA 6..324 6..324 1099 65.8 Plus
Dsec\GM20968-PA 331 GM20968-PA 26..323 24..321 1007 63.8 Plus
Dsec\GM20969-PA 327 GM20969-PA 13..325 11..323 967 61.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10499-PA 325 GD10499-PA 1..325 1..325 1715 97.5 Plus
Dsim\GD10500-PA 329 GD10500-PA 1..324 1..324 1110 67.9 Plus
Dsim\GD10497-PA 331 GD10497-PA 26..323 24..321 1008 63.8 Plus
Dsim\GD10498-PA 327 GD10498-PA 13..325 11..323 968 61.7 Plus
Dsim\GD20174-PA 336 GD20174-PA 33..325 26..319 603 42.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22106-PA 327 GJ22106-PA 8..321 8..321 1100 68.5 Plus
Dvir\GJ22107-PA 327 GJ22107-PA 5..322 5..322 1025 63.8 Plus
Dvir\GJ22105-PA 333 GJ22105-PA 11..323 11..321 1015 63.9 Plus
Dvir\GJ17067-PA 390 GJ17067-PA 45..347 20..323 792 55.6 Plus
Dvir\GJ17066-PA 358 GJ17066-PA 26..343 7..324 790 53.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18001-PA 325 GK18001-PA 6..321 6..321 1134 69.3 Plus
Dwil\GK17999-PA 337 GK17999-PA 28..327 26..325 1029 66 Plus
Dwil\GK14727-PA 336 GK14727-PA 26..330 14..323 980 63.3 Plus
Dwil\GK18000-PA 297 GK18000-PA 1..296 30..324 967 60.8 Plus
Dwil\GK14728-PA 292 GK14728-PA 3..291 29..323 957 65.1 Plus
Dwil\GK14727-PA 336 GK14727-PA 1..56 72..131 158 53.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19139-PA 326 GE19139-PA 1..323 1..323 1578 92.3 Plus
Dyak\GE19140-PA 329 GE19140-PA 1..324 1..324 1164 68.5 Plus
Dyak\GE19137-PA 331 GE19137-PA 26..323 24..321 1006 63.8 Plus
Dyak\GE19141-PA 314 GE19141-PA 6..303 6..324 998 63.3 Plus
Dyak\GE19138-PA 327 GE19138-PA 12..325 10..323 986 62.4 Plus