Clone LP06390 Report

Search the DGRC for LP06390

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:63
Well:90
Vector:pOT2
Associated Gene/TranscriptImpL1-RA
Protein status:LP06390.pep: gold
Sequenced Size:1153

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
ImpL1-RA 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

LP06390.complete Sequence

1153 bp assembled on 2011-01-11

GenBank Submission: BT125907.1

> LP06390.complete
CAGCTGACCAGATCAACATGAGGCCATACCAAGTAGTTTGCATCGTAGCA
GTAGCAGCTCTGCTGCTTTTGGAGGCGATTCCCGCGGATGCAAAGCGGCG
CAAGCACAAGGGCTCCGATCATCACTATGAAAAGTCTGATCCCCACAAGA
CCAAGACAAAGACCAAGTGGTCTAGCTCCACGGATTTGGCTGGAAACACT
CCAATTTCCACCGAAGAGCACGGCTACTATGTAAAGCGCACCTTTGCGGC
TCCCGGTGAGATTGGAGCCGCACAGAAGCGTCTAAGTCCCCCCTATTTGG
CCATTCCCATCGCCTGGTTCAGCTGTGAGTCGGGCCAGAAGAATTGCCAG
TCTTCCAATTCCGCGGCTATCAACAGTGCCGCGCAGTCCTTGAGCGAGGG
CTATCTGTGCGACGATGATTGCGATGAACTGTACGAGCCCATCTGCGGCA
GGACCACCTCAGAGGTGGCCGTTTTCTACAACAAGTGCAAGTTGGGTGTA
GCCAAGTGCCGATCCCACGGTCTTTGGACGGACTTCGCCTATGCCGAGTG
CCAGGCGAAATATCCGCAGGAAACTGCCTATGCCGACAAGAAGTTCCGGT
CATCGCCTTATTTCCGGGATGCGGCCATCGTGGAGCAATTGAAGCTGGAG
GAGGAGAAGCGTAAGCAGGAGGAGGAACAACACAAGCTGGAGAAGGAGCA
AAAGAAGAAGGAGAAGGCTGAGAAAAATAAGAACGAGAAGGACAGCAGCG
AAAGCAGCGAGGAGAAGGATGACCAAAAGGAAAACAAGCAGAAGGATCCC
CTTTCCCTAATGCCACAGAAGAAAGTGGAATCCACCCAGAAGCCAGTGCC
AGTTCCTATTCAAGTAGCAGTTCCAAAACCAGTTTCAGTTTTGGAGCCTG
CAAAGACGACCGAGGACATCGCTATGCCGCCTATGCCACTGAAGGACACT
CCCACGCCCAAACCTCTGGAGATCGCGCCCCTTCACCAGCAGACCCAACC
CAAGGGCAAGGACATTGATAGGCTCAAGTACCAAGTAGCTTAGAAAGCAA
TGGCTACACAAATCTCACCTAATTATAGTATTTATTTAATTTATTACAAC
AAATAAAATTCTAAACAACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

LP06390.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 13373135..13374209 46..1120 5375 100 Plus
chr3L 24539361 chr3L 13373015..13373062 1..48 240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13382908..13383983 46..1121 5380 100 Plus
3L 28110227 3L 13382788..13382835 1..48 240 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 13376008..13377083 46..1121 5380 100 Plus
3L 28103327 3L 13375888..13375935 1..48 240 100 Plus
Blast to na_te.dros performed 2019-03-17 01:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 8767..8891 642..760 117 56.8 Plus
micropia 5461 micropia DMDM11 5461bp 3942..3996 526..474 116 72.7 Minus
gypsy9 5349 gypsy9 GYPSY9 5349bp 728..782 1108..1054 112 71.4 Minus

LP06390.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:30:53 Download gff for LP06390.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 13373015..13373062 1..48 100 -> Plus
chr3L 13373138..13373735 49..646 100 == Plus
chr3L 13373886..13374209 797..1120 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-01-11 10:26:33 Download gff for LP06390.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RA 1..1026 18..1043 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:40:52 Download gff for LP06390.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RA 1..1026 18..1043 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:00:03 Download gff for LP06390.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RA 1..1026 18..1043 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:26:32 Download gff for LP06390.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RA 32..1151 1..1120 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:40:52 Download gff for LP06390.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RA 24..1143 1..1120 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:00:03 Download gff for LP06390.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL1-RA 24..1143 1..1120 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:30:53 Download gff for LP06390.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13382788..13382835 1..48 100 -> Plus
3L 13382911..13383982 49..1120 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:30:53 Download gff for LP06390.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13382788..13382835 1..48 100 -> Plus
3L 13382911..13383982 49..1120 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:30:53 Download gff for LP06390.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13382788..13382835 1..48 100 -> Plus
3L 13382911..13383982 49..1120 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:40:52 Download gff for LP06390.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13375888..13375935 1..48 100 -> Plus
arm_3L 13376011..13377082 49..1120 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:55:08 Download gff for LP06390.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13376011..13377082 49..1120 100   Plus
3L 13375888..13375935 1..48 100 -> Plus

LP06390.pep Sequence

Translation from 2 to 1042

> LP06390.pep
ADQINMRPYQVVCIVAVAALLLLEAIPADAKRRKHKGSDHHYEKSDPHKT
KTKTKWSSSTDLAGNTPISTEEHGYYVKRTFAAPGEIGAAQKRLSPPYLA
IPIAWFSCESGQKNCQSSNSAAINSAAQSLSEGYLCDDDCDELYEPICGR
TTSEVAVFYNKCKLGVAKCRSHGLWTDFAYAECQAKYPQETAYADKKFRS
SPYFRDAAIVEQLKLEEEKRKQEEEQHKLEKEQKKKEKAEKNKNEKDSSE
SSEEKDDQKENKQKDPLSLMPQKKVESTQKPVPVPIQVAVPKPVSVLEPA
KTTEDIAMPPMPLKDTPTPKPLEIAPLHQQTQPKGKDIDRLKYQVA*

LP06390.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24041-PA 356 GF24041-PA 1..356 6..346 880 65.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15638-PA 343 GG15638-PA 1..343 6..346 1356 88.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17161-PA 320 GH17161-PA 1..278 6..319 755 51.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL1-PA 341 CG10717-PA 1..341 6..346 1797 100 Plus
ImpL1-PC 340 CG10717-PC 1..340 6..346 1781 99.7 Plus
ImpL1-PB 366 CG10717-PB 1..366 6..346 1761 93.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11776-PA 362 GI11776-PA 1..292 6..316 685 51.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15712-PA 323 GL15712-PA 44..323 48..346 848 59.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10517-PA 323 GA10517-PA 18..323 24..346 875 60.1 Plus
Dpse\GA29257-PA 304 GA29257-PA 18..196 24..213 652 69.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25416-PA 342 GM25416-PA 1..342 6..346 1400 94.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14446-PA 342 GD14446-PA 1..342 6..346 1394 94.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13478-PA 333 GJ13478-PA 1..277 6..314 745 54.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17441-PA 324 GK17441-PA 1..277 6..325 664 50.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21966-PA 348 GE21966-PA 1..348 6..346 1420 90.5 Plus

LP06390.hyp Sequence

Translation from 2 to 1042

> LP06390.hyp
ADQINMRPYQVVCIVAVAALLLLEAIPADAKRRKHKGSDHHYEKSDPHKT
KTKTKWSSSTDLAGNTPISTEEHGYYVKRTFAAPGEIGAAQKRLSPPYLA
IPIAWFSCESGQKNCQSSNSAAINSAAQSLSEGYLCDDDCDELYEPICGR
TTSEVAVFYNKCKLGVAKCRSHGLWTDFAYAECQAKYPQETAYADKKFRS
SPYFRDAAIVEQLKLEEEKRKQEEEQHKLEKEQKKKEKAEKNKNEKDSSE
SSEEKDDQKENKQKDPLSLMPQKKVESTQKPVPVPIQVAVPKPVSVLEPA
KTTEDIAMPPMPLKDTPTPKPLEIAPLHQQTQPKGKDIDRLKYQVA*

LP06390.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL1-PA 341 CG10717-PA 1..341 6..346 1797 100 Plus
ImpL1-PC 340 CG10717-PC 1..340 6..346 1781 99.7 Plus
ImpL1-PB 366 CG10717-PB 1..366 6..346 1761 93.2 Plus