Clone LP06455 Report

Search the DGRC for LP06455

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:64
Well:55
Vector:pOT2
Associated Gene/TranscriptOsi4-RA
Protein status:LP06455.pep: gold
Preliminary Size:1289
Sequenced Size:1534

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10303 2002-01-01 Sim4 clustering to Release 2
CG10303 2002-05-18 Blastp of sequenced clone
CG10303 2003-01-01 Sim4 clustering to Release 3
Osi4 2008-04-29 Release 5.5 accounting
Osi4 2008-08-15 Release 5.9 accounting
Osi4 2008-12-18 5.12 accounting

Clone Sequence Records

LP06455.complete Sequence

1534 bp (1534 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119041

> LP06455.complete
CCATCGAATCGCGATCGATCGCATCCATGTGAAGGATACGCCGTGCTCTC
GTCCTTTTTCTAGTGTCGTGTGTTGTGTTGAGTGTTCTACCGAAAAAGAA
AACCTGAAAAAGCCCGAAAATGCCCAGGCATTTAGTTGCCAGCTGCCTTC
TGCTGGCTTTGGGTCTGAACATGAGCCTGGCGGCGATTCACAAGCGCAGT
GGTGCGAATTCGTTGGGAGTGGATCCCGAGGGCAAGCCTGCGGCGAATCC
TGCGGTCAGTGTGGAGAACACTGACCTGCTGGACAAGCTGAGCTGGAAGT
GCGCAAACAACGCGAGTTGCCTGTACGGGGTGGCCAATGGTCTCATGGCC
TCCTACCGTCGTGGTGAAACCCTCAAGCTGGGGCTTTTCGACCTGGTCAA
GTTGCCCGAACTAGATGCTTCTCGGAAGCACAAGTGGGGCACTGGGCGCG
GTCTCTCCGGCTTTATGGACTTTGTGACGGAAAACGCCATCAGGGTGCCC
GTGGGCCCCATGGTCTTCAGTGTTCAGCGAGCCGAGGACGACAGCGATTA
TATCGAGGTAGCACTGCTGAAAAAGACCTCCAGCAGCACAGGCCGCCTGC
AGGTCAATGGAGGAGGACTACTGGGCGGTGGAGGTGGCCTGGGAGGAAAT
GGTGGCGGTGGAGGAGGCCTGCTGGGCGGCGGAGGTGGTGACAATGGCGG
CGGAGGCGGTCTTCTGGGCGGACGGAGGCGGCACCAGCACCAGGACAAGA
AGCAGTTCCAGATGTTCATACCCATGTACCTGGCGGCCACAACATTCGGG
TGGACGATGGTGGCCGCAAAGGCGGTGGGGCTCCTGACTCTCAAGGCTCT
GATCCTGTCCAAAATTGCCTTCGTGGTAGCCGCAATAGTGTTGATCAAGA
AGCTCATGGACAACGCCAGCGAAAAGATGATGTACCAGTTCCCGGAACAG
ACGCCGTACATGATGCCGTACGGCATGGACTATCCGCTTCATGGAGCGGA
AATATCGCCGGAAATGTACCCGTCATCGCTGCACCACCTGGCGATGGCCG
GAGGCGGCCAGCTGCCAGGACATCCCGGACATCCGGGACTGGAGAGTCTG
AGCGCCGAGAGCCACCTGCACTCCGCCCAGGTGTCCAGCGACGGCAGCAA
TAACACACAGGTGCTCGCCGCCTTGGGTGGTCTGGGTGGACTGGGACACA
AGATCAAACGTGAGGACTCGTGGATGGCGAAGACCACTCCCGCCCGGCGA
CCCCTGATCTACAACTACGTGCAACCACACATGCCGTACTACCGCTCCTG
AGGCGAGAATTAGCCAATTAGCAGCTACCAAAGACCCTTGGGAGGAGGAG
GTTGCTCTGCTGCCATAGGACCCAAATAGCGGACACGTTGCATCGGAAAA
ACAGCCTAGCGAGCTGGCGTATTGTTATTATTTATTGAATTGTATTTAAC
TTAGTTAAACCTGGCGCACACATTTAGTCTAGTTCTTGTCTCTGTAATTA
GCAGTCGAAGTGCTACAAAAAAAAAAAAAAAAAA

LP06455.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
Osi4-RA 1653 Osi4-RA 118..1651 1..1534 7640 99.8 Plus
Osi4.a 1659 Osi4.a 118..1657 1..1534 7555 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2046842..2047433 592..1 2945 99.8 Minus
chr3R 27901430 chr3R 2045871..2046209 926..588 1695 100 Minus
chr3R 27901430 chr3R 2045274..2045585 1233..922 1545 99.7 Minus
chr3R 27901430 chr3R 2043970..2044252 1516..1234 1415 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:51:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6221190..6221781 592..1 2960 100 Minus
3R 32079331 3R 6220219..6220557 926..588 1695 100 Minus
3R 32079331 3R 6219622..6219933 1233..922 1545 99.7 Minus
3R 32079331 3R 6218300..6218600 1534..1234 1475 99.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5962021..5962612 592..1 2960 100 Minus
3R 31820162 3R 5961050..5961388 926..588 1695 100 Minus
3R 31820162 3R 5960453..5960764 1233..922 1545 99.6 Minus
3R 31820162 3R 5959131..5959431 1534..1234 1475 99.3 Minus
Blast to na_te.dros performed on 2019-03-16 18:52:29 has no hits.

LP06455.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:53:19 Download gff for LP06455.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2043970..2044252 1234..1516 100 <- Minus
chr3R 2045274..2045581 926..1233 100 <- Minus
chr3R 2045872..2046205 592..925 100 <- Minus
chr3R 2046843..2047433 1..591 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:37:25 Download gff for LP06455.complete
Subject Subject Range Query Range Percent Splice Strand
Osi4-RA 1..1182 120..1301 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:42:25 Download gff for LP06455.complete
Subject Subject Range Query Range Percent Splice Strand
Osi4-RA 1..1182 120..1301 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:34 Download gff for LP06455.complete
Subject Subject Range Query Range Percent Splice Strand
Osi4-RA 1..1182 120..1301 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:34:34 Download gff for LP06455.complete
Subject Subject Range Query Range Percent Splice Strand
Osi4-RA 1..1182 120..1301 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:21 Download gff for LP06455.complete
Subject Subject Range Query Range Percent Splice Strand
Osi4-RA 1..1182 120..1301 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:16:44 Download gff for LP06455.complete
Subject Subject Range Query Range Percent Splice Strand
Osi4-RA 1..1516 1..1516 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:42:25 Download gff for LP06455.complete
Subject Subject Range Query Range Percent Splice Strand
Osi4-RA 1..1516 1..1516 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:34 Download gff for LP06455.complete
Subject Subject Range Query Range Percent Splice Strand
Osi4-RA 1..1516 1..1516 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:34:34 Download gff for LP06455.complete
Subject Subject Range Query Range Percent Splice Strand
Osi4-RA 1..1516 1..1516 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:21 Download gff for LP06455.complete
Subject Subject Range Query Range Percent Splice Strand
Osi4-RA 1..1516 1..1516 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:53:19 Download gff for LP06455.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6218318..6218600 1234..1516 100 <- Minus
3R 6219622..6219929 926..1233 100 <- Minus
3R 6220220..6220553 592..925 100 <- Minus
3R 6221191..6221781 1..591 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:53:19 Download gff for LP06455.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6218318..6218600 1234..1516 100 <- Minus
3R 6219622..6219929 926..1233 100 <- Minus
3R 6220220..6220553 592..925 100 <- Minus
3R 6221191..6221781 1..591 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:53:19 Download gff for LP06455.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6218318..6218600 1234..1516 100 <- Minus
3R 6219622..6219929 926..1233 100 <- Minus
3R 6220220..6220553 592..925 100 <- Minus
3R 6221191..6221781 1..591 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:34 Download gff for LP06455.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2044040..2044322 1234..1516 100 <- Minus
arm_3R 2045344..2045651 926..1233 100 <- Minus
arm_3R 2045942..2046275 592..925 100 <- Minus
arm_3R 2046913..2047503 1..591 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:06:53 Download gff for LP06455.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5959149..5959431 1234..1516 100 <- Minus
3R 5960453..5960760 926..1233 100 <- Minus
3R 5961051..5961384 592..925 100 <- Minus
3R 5962022..5962612 1..591 100   Minus

LP06455.pep Sequence

Translation from 119 to 1300

> LP06455.pep
MPRHLVASCLLLALGLNMSLAAIHKRSGANSLGVDPEGKPAANPAVSVEN
TDLLDKLSWKCANNASCLYGVANGLMASYRRGETLKLGLFDLVKLPELDA
SRKHKWGTGRGLSGFMDFVTENAIRVPVGPMVFSVQRAEDDSDYIEVALL
KKTSSSTGRLQVNGGGLLGGGGGLGGNGGGGGGLLGGGGGDNGGGGGLLG
GRRRHQHQDKKQFQMFIPMYLAATTFGWTMVAAKAVGLLTLKALILSKIA
FVVAAIVLIKKLMDNASEKMMYQFPEQTPYMMPYGMDYPLHGAEISPEMY
PSSLHHLAMAGGGQLPGHPGHPGLESLSAESHLHSAQVSSDGSNNTQVLA
ALGGLGGLGHKIKREDSWMAKTTPARRPLIYNYVQPHMPYYRS*

LP06455.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18625-PA 389 GF18625-PA 1..389 1..393 1615 85.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10555-PA 396 GG10555-PA 1..396 1..393 1716 94.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14283-PA 403 GH14283-PA 18..403 17..393 1376 79.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
Osi4-PA 393 CG10303-PA 1..393 1..393 2062 100 Plus
Osi4-PB 395 CG10303-PB 1..395 1..393 2045 99.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23175-PA 396 GI23175-PA 1..395 1..392 1428 76.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23480-PA 405 GL23480-PA 20..405 19..393 1412 81.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10232-PA 405 GA10232-PA 20..405 19..393 1413 82.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10564-PA 393 GM10564-PA 1..393 1..393 1997 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19554-PA 386 GD19554-PA 1..386 1..393 1954 95.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14490-PA 399 GJ14490-PA 22..399 21..393 1400 78.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14207-PA 414 GK14207-PA 23..414 22..393 1472 81.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24111-PA 391 GE24111-PA 1..391 1..393 1962 95.9 Plus

LP06455.hyp Sequence

Translation from 119 to 1300

> LP06455.hyp
MPRHLVASCLLLALGLNMSLAAIHKRSGANSLGVDPEGKPAANPAVSVEN
TDLLDKLSWKCANNASCLYGVANGLMASYRRGETLKLGLFDLVKLPELDA
SRKHKWGTGRGLSGFMDFVTENAIRVPVGPMVFSVQRAEDDSDYIEVALL
KKTSSSTGRLQVNGGGLLGGGGGLGGNGGGGGGLLGGGGGDNGGGGGLLG
GRRRHQHQDKKQFQMFIPMYLAATTFGWTMVAAKAVGLLTLKALILSKIA
FVVAAIVLIKKLMDNASEKMMYQFPEQTPYMMPYGMDYPLHGAEISPEMY
PSSLHHLAMAGGGQLPGHPGHPGLESLSAESHLHSAQVSSDGSNNTQVLA
ALGGLGGLGHKIKREDSWMAKTTPARRPLIYNYVQPHMPYYRS*

LP06455.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
Osi4-PA 393 CG10303-PA 1..393 1..393 2062 100 Plus
Osi4-PB 395 CG10303-PB 1..395 1..393 2045 99.2 Plus