Clone LP06554 Report

Search the DGRC for LP06554

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:65
Well:54
Vector:pOT2
Associated Gene/TranscriptCp1-RA
Protein status:LP06554.pep: gold
Sequenced Size:1514

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6692 2003-01-01 Sim4 clustering to Release 3
CG6692 2004-10-04 Blastp of sequenced clone
Cp1 2008-04-29 Release 5.5 accounting
Cp1 2008-08-15 Release 5.9 accounting
Cp1 2008-12-18 5.12 accounting

Clone Sequence Records

LP06554.complete Sequence

1514 bp (1514 high quality bases) assembled on 2004-10-04

GenBank Submission: BT016071

> LP06554.complete
GACTGGTCACTCTGTCGGAGATTTCTTGTTTAAACAATTTCTGCTGGTTT
TCATTAAACAACGAAAGGTCTTTGGGACTGGATCATCAAGAGCGACTTGT
TAAATACAATCGGTTGACTTGCACATTAGTGTTGTTTCAGCCAATTAAAA
AGAGTGCAACAACAGTGATAAATCAGTGAATTTACTGCATTCCTTGCGAC
GCAATTCCGAGTGATTCCAGAACAAATCACAATGCGCACAGCTGTTTTGC
TGCCACTTTTGGCCCTGCTGGCGGTGGCTCAGGCCGTTTCCTTCGCCGAC
GTGGTCATGGAGGAATGGCATACGTTCAAGCTGGAGCACCGCAAGAACTA
TCAGGATGAAACCGAGGAGCGTTTCCGCCTCAAGATCTTCAATGAGAACA
AGCACAAGATTGCCAAGCACAACCAGCGATTCGCCGAGGGCAAGGTGAGC
TTCAAACTGGCGGTCAATAAGTACGCCGATTTGCTGCACCACGAATTCCG
TCAGCTGATGAACGGCTTCAACTACACTCTGCACAAGCAACTGCGTGCCG
CCGATGAAAGCTTCAAGGGAGTCACCTTCATCTCGCCGGCTCATGTGACG
CTGCCCAAATCTGTGGACTGGCGCACCAAGGGAGCTGTGACCGCCGTCAA
GGATCAGGGACACTGCGGCAGCTGCTGGGCCTTCTCCAGCACAGGCGCCC
TCGAGGGTCAGCATTTCCGCAAGTCCGGTGTCCTCGTCTCGCTGTCCGAG
CAGAATCTGGTCGATTGCTCCACCAAGTACGGCAACAATGGATGCAACGG
CGGTCTCATGGACAATGCCTTCCGCTATATTAAGGATAATGGAGGCATCG
ATACCGAGAAGTCCTATCCCTACGAGGCCATCGATGACTCGTGCCACTTT
AACAAGGGCACAGTCGGAGCCACCGATCGTGGATTCACCGATATTCCCCA
GGGTGATGAGAAGAAGATGGCCGAGGCTGTGGCCACCGTTGGTCCCGTTT
CCGTCGCCATCGATGCCTCCCACGAGTCGTTCCAGTTCTACTCGGAGGGC
GTCTACAACGAGCCGCAGTGTGATGCCCAGAATCTGGATCACGGTGTGCT
GGTCGTTGGCTTCGGCACCGACGAGTCCGGCGAGGATTACTGGCTGGTGA
AGAACTCGTGGGGCACCACCTGGGGCGACAAGGGCTTCATCAAGATGCTG
CGCAACAAGGAGAACCAGTGCGGCATCGCTAGCGCCTCCAGCTATCCCCT
GGTCTAGAGCAGAACTGATGTAGTTTAGCCCCAGCATTCATATGATATGA
TTTAGAAAAGAAACAGAAAAGATACCAACGCAAGCATCTCAAAAATGAAC
TTTAATAATTTAGCCCAACCTCATATTTAATGAACTAATTTTGTAATGGG
TCCATTGTATTCGCGTTTCTCTGCCATCATGTATGATATAGGTGAACAAC
AAATCTGTTGATGTTTGTAGAAAAATAAATAAAAATTATATAATTTTAAA
AAAAAAAAAAAAAA

LP06554.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Cp1-RA 1609 Cp1-RA 42..1543 1..1502 7510 100 Plus
Cp1-RC 1379 Cp1-RC 84..1374 212..1502 6455 100 Plus
Cp1-RB 1505 Cp1-RB 218..1500 220..1502 6415 100 Plus
Cp1-RB 1505 Cp1-RB 6..219 1..214 1070 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9854359..9855311 545..1497 4765 100 Plus
chr2R 21145070 chr2R 9854083..9854299 329..545 1085 100 Plus
chr2R 21145070 chr2R 9847994..9848206 1..213 1035 99.1 Plus
chr2R 21145070 chr2R 9849548..9849665 213..330 575 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:51:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13967029..13967986 545..1502 4790 100 Plus
2R 25286936 2R 13966753..13966969 329..545 1085 100 Plus
2R 25286936 2R 13960664..13960876 1..213 1065 100 Plus
2R 25286936 2R 13962219..13962336 213..330 590 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13968228..13969185 545..1502 4790 100 Plus
2R 25260384 2R 13967952..13968168 329..545 1085 100 Plus
2R 25260384 2R 13961863..13962075 1..213 1065 100 Plus
2R 25260384 2R 13963418..13963535 213..330 590 100 Plus
Blast to na_te.dros performed 2019-03-16 18:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 6450..6519 1287..1358 129 68.1 Plus

LP06554.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:18:34 Download gff for LP06554.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9847994..9848206 1..213 99 -> Plus
chr2R 9849549..9849665 214..330 99 -> Plus
chr2R 9854085..9854299 331..545 100 -> Plus
chr2R 9854360..9855283 546..1469 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:37:29 Download gff for LP06554.complete
Subject Subject Range Query Range Percent Splice Strand
Cp1-RC 71..1116 212..1257 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:31:09 Download gff for LP06554.complete
Subject Subject Range Query Range Percent Splice Strand
Cp1-RC 71..1116 212..1257 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:12:35 Download gff for LP06554.complete
Subject Subject Range Query Range Percent Splice Strand
Cp1-RC 71..1116 212..1257 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:14:59 Download gff for LP06554.complete
Subject Subject Range Query Range Percent Splice Strand
Cp1-RC 71..1116 212..1257 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:01 Download gff for LP06554.complete
Subject Subject Range Query Range Percent Splice Strand
Cp1-RC 71..1116 212..1257 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:35:47 Download gff for LP06554.complete
Subject Subject Range Query Range Percent Splice Strand
Cp1-RA 6..1502 1..1497 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:31:08 Download gff for LP06554.complete
Subject Subject Range Query Range Percent Splice Strand
Cp1-RA 6..1502 1..1497 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:12:35 Download gff for LP06554.complete
Subject Subject Range Query Range Percent Splice Strand
Cp1-RA 1..1486 12..1497 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:14:59 Download gff for LP06554.complete
Subject Subject Range Query Range Percent Splice Strand
Cp1-RA 6..1502 1..1497 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:01 Download gff for LP06554.complete
Subject Subject Range Query Range Percent Splice Strand
Cp1-RA 1..1486 12..1497 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:18:34 Download gff for LP06554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13966755..13966969 331..545 100 -> Plus
2R 13960664..13960876 1..213 100 -> Plus
2R 13962220..13962336 214..330 100 -> Plus
2R 13967030..13967981 546..1497 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:18:34 Download gff for LP06554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13966755..13966969 331..545 100 -> Plus
2R 13960664..13960876 1..213 100 -> Plus
2R 13962220..13962336 214..330 100 -> Plus
2R 13967030..13967981 546..1497 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:18:34 Download gff for LP06554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13966755..13966969 331..545 100 -> Plus
2R 13960664..13960876 1..213 100 -> Plus
2R 13962220..13962336 214..330 100 -> Plus
2R 13967030..13967981 546..1497 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:12:35 Download gff for LP06554.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9848169..9848381 1..213 100 -> Plus
arm_2R 9849725..9849841 214..330 100 -> Plus
arm_2R 9854260..9854474 331..545 100 -> Plus
arm_2R 9854535..9855486 546..1497 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:51:53 Download gff for LP06554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13967954..13968168 331..545 100 -> Plus
2R 13961863..13962075 1..213 100 -> Plus
2R 13963419..13963535 214..330 100 -> Plus
2R 13968229..13969180 546..1497 100   Plus

LP06554.pep Sequence

Translation from 231 to 1256

> LP06554.pep
MRTAVLLPLLALLAVAQAVSFADVVMEEWHTFKLEHRKNYQDETEERFRL
KIFNENKHKIAKHNQRFAEGKVSFKLAVNKYADLLHHEFRQLMNGFNYTL
HKQLRAADESFKGVTFISPAHVTLPKSVDWRTKGAVTAVKDQGHCGSCWA
FSSTGALEGQHFRKSGVLVSLSEQNLVDCSTKYGNNGCNGGLMDNAFRYI
KDNGGIDTEKSYPYEAIDDSCHFNKGTVGATDRGFTDIPQGDEKKMAEAV
ATVGPVSVAIDASHESFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESG
EDYWLVKNSWGTTWGDKGFIKMLRNKENQCGIASASSYPLV*

LP06554.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13722-PA 417 GF13722-PA 107..417 31..341 1590 92.6 Plus
Dana\GF17600-PA 333 GF17600-PA 1..333 1..341 1066 57.9 Plus
Dana\GF17358-PA 329 GF17358-PA 1..329 1..341 910 51.9 Plus
Dana\GF13714-PA 352 GF13714-PA 9..352 1..341 619 39 Plus
Dana\GF13132-PA 392 GF13132-PA 68..392 2..341 619 38.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20414-PA 341 GG20414-PA 1..341 1..341 1810 96.5 Plus
Dere\GG20405-PA 352 GG20405-PA 9..352 1..341 616 37.7 Plus
Dere\GG20691-PA 378 GG20691-PA 53..378 14..341 615 39 Plus
Dere\GG11133-PA 615 GG11133-PA 303..610 23..337 600 39.9 Plus
Dere\GG23942-PA 338 GG23942-PA 35..338 28..341 588 36 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22826-PA 340 GH22826-PA 1..340 1..341 1632 85.9 Plus
Dgri\GH20767-PA 329 GH20767-PA 4..329 6..341 783 46.1 Plus
Dgri\GH21411-PA 391 GH21411-PA 81..391 26..341 623 39.1 Plus
Dgri\GH23906-PA 358 GH23906-PA 48..358 26..341 620 39.1 Plus
Dgri\GH21038-PA 349 GH21038-PA 47..349 38..341 610 40.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
Cp1-PC 371 CG6692-PC 31..371 1..341 1822 100 Plus
Cp1-PA 341 CG6692-PA 1..341 1..341 1822 100 Plus
Cp1-PE 338 CG6692-PE 31..338 34..341 1661 100 Plus
Cp1-PD 249 CG6692-PD 1..249 93..341 1349 100 Plus
CG4847-PE 390 CG4847-PE 79..390 26..341 621 41.7 Plus
CG4847-PC 390 CG4847-PC 79..390 26..341 621 41.7 Plus
CG4847-PA 390 CG4847-PA 79..390 26..341 621 41.7 Plus
CG4847-PD 420 CG4847-PD 109..420 26..341 621 41.7 Plus
CG6347-PA 352 CG6347-PA 15..352 7..341 617 39.8 Plus
CG11459-PB 336 CG11459-PB 5..334 2..339 600 37.8 Plus
CG11459-PA 336 CG11459-PA 5..334 2..339 600 37.8 Plus
26-29-p-PA 549 CG8947-PA 241..546 25..338 593 41.6 Plus
CG5367-PA 338 CG5367-PA 35..338 28..341 587 36.3 Plus
CG12163-PB 475 CG12163-PB 163..470 23..337 583 39.3 Plus
CG12163-PA 614 CG12163-PA 302..609 23..337 583 39.3 Plus
Swim-PA 431 CG3074-PA 201..422 136..341 279 32.2 Plus
Swim-PB 431 CG3074-PB 201..422 136..341 279 32.2 Plus
CG6337-PB 340 CG6337-PB 27..336 28..339 227 26.1 Plus
CG6337-PA 340 CG6337-PA 27..336 28..339 227 26.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21205-PA 339 GI21205-PA 1..339 1..341 1667 88 Plus
Dmoj\GI20850-PA 329 GI20850-PA 4..329 6..341 841 49.1 Plus
Dmoj\GI13676-PA 324 GI13676-PA 1..324 1..341 755 43.9 Plus
Dmoj\GI18587-PA 366 GI18587-PA 62..366 32..341 615 40.1 Plus
Dmoj\GI11630-PA 547 GI11630-PA 239..544 25..338 604 42.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17172-PA 341 GL17172-PA 1..341 1..341 1728 91.8 Plus
Dper\GL15686-PA 323 GL15686-PA 1..323 1..341 708 42.6 Plus
Dper\GL11434-PA 372 GL11434-PA 61..372 26..341 625 39.8 Plus
Dper\GL17477-PA 353 GL17477-PA 9..353 1..341 624 38.6 Plus
Dper\GL24978-PA 338 GL24978-PA 20..338 18..341 579 37.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25021-PA 341 GA25021-PA 1..341 1..341 1728 91.8 Plus
Dpse\GA25021-PB 319 GA25021-PB 11..319 33..341 1576 92.9 Plus
Dpse\GA23505-PA 323 GA23505-PA 1..323 1..341 713 42.9 Plus
Dpse\GA24205-PA 353 GA24205-PA 9..353 1..341 624 38.6 Plus
Dpse\GA18475-PA 372 GA18475-PA 61..372 26..341 624 39.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21500-PA 341 GM21500-PA 1..341 1..341 1839 99.1 Plus
Dsec\GM21493-PA 352 GM21493-PA 9..352 1..341 635 39.1 Plus
Dsec\GM21790-PA 382 GM21790-PA 71..382 26..341 627 41.1 Plus
Dsec\GM10853-PA 336 GM10853-PA 8..336 5..341 578 37.1 Plus
Dsec\GM11735-PA 338 GM11735-PA 35..338 28..341 577 35 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10995-PA 341 GD10995-PA 1..341 1..341 1839 99.1 Plus
Dsim\GD10987-PA 352 GD10987-PA 9..352 1..341 632 39.1 Plus
Dsim\GD11280-PA 382 GD11280-PA 71..382 26..341 630 41.1 Plus
Dsim\GD19835-PA 336 GD19835-PA 8..336 5..341 581 36.6 Plus
Dsim\GD22268-PA 338 GD22268-PA 35..338 28..341 576 35 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20806-PA 339 GJ20806-PA 3..339 5..341 1653 87.8 Plus
Dvir\GJ20585-PA 333 GJ20585-PA 4..333 6..341 849 48.1 Plus
Dvir\GJ14012-PA 327 GJ14012-PA 1..327 1..340 800 44.4 Plus
Dvir\GJ13554-PA 331 GJ13554-PA 1..331 1..341 775 45.9 Plus
Dvir\GJ11310-PA 328 GJ11310-PA 7..327 9..340 740 43.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19626-PA 341 GK19626-PA 1..341 1..341 1580 81.8 Plus
Dwil\GK22909-PA 370 GK22909-PA 59..370 26..341 604 39 Plus
Dwil\GK22908-PA 381 GK22908-PA 71..381 26..341 595 39.3 Plus
Dwil\GK14287-PA 610 GK14287-PA 297..609 23..341 585 37.5 Plus
Dwil\GK16790-PA 549 GK16790-PA 245..546 29..338 579 41.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12574-PA 341 GE12574-PA 1..341 1..341 1823 97.9 Plus
Dyak\GE12565-PA 353 GE12565-PA 9..353 1..341 623 38.8 Plus
Dyak\GE11675-PA 384 GE11675-PA 61..384 16..341 621 39.6 Plus
Dyak\GE25302-PA 615 GE25302-PA 309..610 29..337 606 40.2 Plus
Dyak\GE26053-PA 338 GE26053-PA 35..338 28..341 601 36.6 Plus

LP06554.hyp Sequence

Translation from 231 to 1256

> LP06554.hyp
MRTAVLLPLLALLAVAQAVSFADVVMEEWHTFKLEHRKNYQDETEERFRL
KIFNENKHKIAKHNQRFAEGKVSFKLAVNKYADLLHHEFRQLMNGFNYTL
HKQLRAADESFKGVTFISPAHVTLPKSVDWRTKGAVTAVKDQGHCGSCWA
FSSTGALEGQHFRKSGVLVSLSEQNLVDCSTKYGNNGCNGGLMDNAFRYI
KDNGGIDTEKSYPYEAIDDSCHFNKGTVGATDRGFTDIPQGDEKKMAEAV
ATVGPVSVAIDASHESFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESG
EDYWLVKNSWGTTWGDKGFIKMLRNKENQCGIASASSYPLV*

LP06554.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
Cp1-PA 341 CG6692-PA 1..341 1..341 1822 100 Plus
Cp1-PC 371 CG6692-PC 31..371 1..341 1822 100 Plus
Cp1-PE 338 CG6692-PE 31..338 34..341 1661 100 Plus
Cp1-PD 249 CG6692-PD 1..249 93..341 1349 100 Plus
CG4847-PE 390 CG4847-PE 79..390 26..341 621 41.7 Plus