Clone LP06581 Report

Search the DGRC for LP06581

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:65
Well:81
Vector:pOT2
Associated Gene/TranscriptCG8083-RA
Protein status:LP06581.pep: gold
Preliminary Size:2132
Sequenced Size:2108

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8083 2001-01-01 Release 2 assignment
CG8083 2001-07-04 Blastp of sequenced clone
CG8083 2003-01-01 Sim4 clustering to Release 3
CG8083 2008-04-29 Release 5.5 accounting
CG8083 2008-08-15 Release 5.9 accounting
CG8083 2008-12-18 5.12 accounting

Clone Sequence Records

LP06581.complete Sequence

2108 bp (2108 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052046

> LP06581.complete
TTTCAACGAGCTACAATGGCAGTTAGCCAACGTTTTTAGTCTGGCTAAAC
AGATGCATTTATCAGTCATTTGTATTCGGGCAGACAATAACGACGTTAAA
AACCCGTTTCGGCCATAACAAACCTATAGTACTCATCAGATACGAAGCAA
AACAAACAGTAAAAAGGTGAATTAACTGTCGTTCCAAAAATTCAAGATGT
CAGCCGAATCATCAAAAGGAGCTATTAACAATGGCTACGAACTGGATCAT
AAGGAGTTGGACATCCGTGACTCGGAAGAATTCACGGAACATCCACTGGA
TGACACCAGCGAGGTGGCAAATAAAAAGGGATATTTTGAAAAGAATCCAA
AAGTAGCGCGACTGGTGAGGATCTCGATTTATGTACTGCTGCATCTGTGT
GTTGTGGGGTACTTCTCATATGCAACCTACCACTATCACGACATAACCAA
CTATGAGTGCTATTGGAAAGACAACCCATTGTGCGGCATCAACTTCTGCA
CGGGCTATGGAATGCTCCTGCTCCTCCTGGGATTCATCTATTTGGGTCTA
TTCTACTACTATGTCTTTAAGCCGATGGTGGGGCACAGCCTGCACAGGAA
CTATATCAAACCATTTTCAAAGAAATGGCACAACTTCAGCAGAACCAGAG
TTGTGTCATTGGCCAGCATCGCATTGCTCCTGGCCCTTTTGGCCATCTTT
GTGTACTTCGAGTGCCGGGACGAGACCCAAAAACTGGTGTCCCTGGTGGC
ACCCTGCTTCTTCATCCTGTGCGGCTACGTTTTCTCCACGAATCGAAGAG
CCATTAATTGGCGCATAGTCATCACGGGAATCACGTGCCAGTTTCTGCTC
GGCATTTTCTGCATCCGCTGGGAGGTGGGACGAAAAATCTTCGAGTGCTT
GGGCAACAAGGTGGCCACGTTTCTGGGCTATGCCACCGATGGAGCCGAGT
TCGTGTTCGGCGACTTCCTGGTGAACAACAATGTGTTCGCCTTCGCCATC
CTGCCGGTTATCTTCTTCTTCAGCTTCTTCATCTCCATCCTGTACTACAT
GGGTACAATGCAGTGGGTGGTGATCAAACTGGGCTGGATCCTGCAGCAGA
TTCTGGGCACCACTGTTTGCGAAAGCGTGACGGCCGCAGCCAACATCTTC
CTTGGCATGTCCGAGAGCCCGCTGCTCATTCGGCCGTATATCAACAAGCT
GACCAAGAGCGAAATCCACAGCATCATGGTGTCCGGATTTGCGACCGTGT
CCGGAACCGTGTTGGCGGCCTACTTGTCATTCGGTGCATCGGCCGCGCAC
TTGATCACCTCCTCGGTGATGGCAGCTCCCGCTACTCTGGCCATCTCTAA
GCTTTACATGCCCGAAACGGAGGAGAGCCAGACCTCATCCGATTCAATTG
AACTGGAAAAATCACAGGACTCTTCGCTGCTGGACGCAGCGTCCAGTGGT
GCCAGCAACGCCGTGCCCATTGTTCTGGGCATTATCGCTAACATAGTCGC
CTTCGTCGCCTTCATCGCCTTCCTAAATGGTCTGGTCAGTTGGTTTGGTT
ACCTGGTGGGTCTCGAGCAAATCGACTTCGAGTGGATATTCTCTAAGCTG
TTCATCCCGCTGGTCTGGGCCATGGGGGTGCCAAAAGAGGATTGCGATAT
CATCGCCAAGGTGGTGGCCACCAAAACCATTATCAATGAGTTTGTGGCCT
ATGAGCGTCTGGGTCAATACATCGAAAATAATGATATCACTGCCCGCAGC
GCTGGAATCGCCACATTCGCCATCTGCGGCTTTGCCAATCCCAGTTCCCT
GGGCATCCTTATCGGATCCCTCAGTGCTATGGCACCACATCGTCGCTCCA
CCATTACAGCAGTGGCTTTCCGAGCGTTTGTGGTGGGCAGCATAGTCTGT
TTCGTATCCGCCAGCTTTGCAGGCATCCTTATACAAGAAGATGACGAGCG
GGCGAACTACAACAGGATATTCGAGAAGTTGGGTCGAAAGAATGTTACTC
AGTTTTAGTTCCTTAAAGTTGTAGTTCGTGATAATTAGCTGATCAAATTT
AGCAAAATACAATTCTTATTTATTAAAGATGTTTAGGATTAAAAAAAAAA
AAAAAAAA

LP06581.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8083-RA 2110 CG8083-RA 20..2110 1..2091 10455 100 Plus
CG8083-RC 2112 CG8083-RC 183..2080 194..2091 9490 100 Plus
CG8083-RB 2115 CG8083-RB 189..2083 194..2091 9420 99.8 Plus
CG8083-RC 2112 CG8083-RC 20..185 1..166 830 100 Plus
CG8083-RB 2115 CG8083-RB 26..191 1..166 830 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4968295..4969063 645..1413 3815 99.7 Plus
chr2R 21145070 chr2R 4969128..4969456 1414..1742 1645 100 Plus
chr2R 21145070 chr2R 4968035..4968236 447..648 1010 100 Plus
chr2R 21145070 chr2R 4967786..4967981 251..446 980 100 Plus
chr2R 21145070 chr2R 4966309..4966498 1..190 935 99.5 Plus
chr2R 21145070 chr2R 4969523..4969704 1742..1923 910 100 Plus
chr2R 21145070 chr2R 4969763..4969932 1921..2090 850 100 Plus
chr2R 21145070 chr2R 4967672..4967727 195..250 280 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:51:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9080737..9081505 645..1413 3845 100 Plus
2R 25286936 2R 9081570..9081898 1414..1742 1645 100 Plus
2R 25286936 2R 9080477..9080678 447..648 1010 100 Plus
2R 25286936 2R 9078746..9078941 1..196 980 100 Plus
2R 25286936 2R 9080228..9080423 251..446 980 100 Plus
2R 25286936 2R 9081965..9082146 1742..1923 910 100 Plus
2R 25286936 2R 9082205..9082375 1921..2091 855 100 Plus
2R 25286936 2R 9080114..9080169 195..250 280 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9081936..9082704 645..1413 3845 100 Plus
2R 25260384 2R 9082769..9083097 1414..1742 1645 100 Plus
2R 25260384 2R 9081676..9081877 447..648 1010 100 Plus
2R 25260384 2R 9081427..9081622 251..446 980 100 Plus
2R 25260384 2R 9079945..9080140 1..196 980 100 Plus
2R 25260384 2R 9083164..9083345 1742..1923 910 100 Plus
2R 25260384 2R 9083404..9083574 1921..2091 855 100 Plus
2R 25260384 2R 9081313..9081368 195..250 280 100 Plus
2R 25260384 2R 9084866..9084954 1104..1192 175 79.7 Plus
2R 25260384 2R 9085626..9085715 1748..1837 165 78.8 Plus
Blast to na_te.dros performed on 2019-03-16 02:53:43 has no hits.

LP06581.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:54:32 Download gff for LP06581.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4969523..4969703 1742..1922 100 -> Plus
chr2R 4969765..4969932 1923..2090 100   Plus
chr2R 4968035..4968236 447..648 100 -> Plus
chr2R 4966309..4966505 1..196 98 -> Plus
chr2R 4967674..4967727 197..250 100 -> Plus
chr2R 4967786..4967981 251..446 100 -> Plus
chr2R 4968299..4969063 649..1413 99 -> Plus
chr2R 4969128..4969455 1414..1741 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:37:31 Download gff for LP06581.complete
Subject Subject Range Query Range Percent Splice Strand
CG8083-RC 1..1812 197..2008 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:59:09 Download gff for LP06581.complete
Subject Subject Range Query Range Percent Splice Strand
CG8083-RC 1..1812 197..2008 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:40:29 Download gff for LP06581.complete
Subject Subject Range Query Range Percent Splice Strand
CG8083-RA 1..1812 197..2008 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:42:26 Download gff for LP06581.complete
Subject Subject Range Query Range Percent Splice Strand
CG8083-RC 1..1812 197..2008 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:24:03 Download gff for LP06581.complete
Subject Subject Range Query Range Percent Splice Strand
CG8083-RA 1..1812 197..2008 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:14:07 Download gff for LP06581.complete
Subject Subject Range Query Range Percent Splice Strand
CG8083-RA 20..2109 1..2090 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:59:09 Download gff for LP06581.complete
Subject Subject Range Query Range Percent Splice Strand
CG8083-RA 20..2109 1..2090 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:40:29 Download gff for LP06581.complete
Subject Subject Range Query Range Percent Splice Strand
CG8083-RA 26..2115 1..2090 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:42:26 Download gff for LP06581.complete
Subject Subject Range Query Range Percent Splice Strand
CG8083-RA 18..2107 1..2090 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:24:03 Download gff for LP06581.complete
Subject Subject Range Query Range Percent Splice Strand
CG8083-RA 26..2115 1..2090 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:54:32 Download gff for LP06581.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9078746..9078941 1..196 100 -> Plus
2R 9080116..9080169 197..250 100 -> Plus
2R 9080228..9080423 251..446 100 -> Plus
2R 9080477..9080678 447..648 100 -> Plus
2R 9080741..9081505 649..1413 100 -> Plus
2R 9081570..9081897 1414..1741 100 -> Plus
2R 9081965..9082145 1742..1922 100 -> Plus
2R 9082207..9082374 1923..2090 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:54:32 Download gff for LP06581.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9078746..9078941 1..196 100 -> Plus
2R 9080116..9080169 197..250 100 -> Plus
2R 9080228..9080423 251..446 100 -> Plus
2R 9080477..9080678 447..648 100 -> Plus
2R 9080741..9081505 649..1413 100 -> Plus
2R 9081570..9081897 1414..1741 100 -> Plus
2R 9081965..9082145 1742..1922 100 -> Plus
2R 9082207..9082374 1923..2090 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:54:32 Download gff for LP06581.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9078746..9078941 1..196 100 -> Plus
2R 9080116..9080169 197..250 100 -> Plus
2R 9080228..9080423 251..446 100 -> Plus
2R 9080477..9080678 447..648 100 -> Plus
2R 9080741..9081505 649..1413 100 -> Plus
2R 9081570..9081897 1414..1741 100 -> Plus
2R 9081965..9082145 1742..1922 100 -> Plus
2R 9082207..9082374 1923..2090 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:40:29 Download gff for LP06581.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4966251..4966446 1..196 100 -> Plus
arm_2R 4967621..4967674 197..250 100 -> Plus
arm_2R 4967733..4967928 251..446 100 -> Plus
arm_2R 4967982..4968183 447..648 100 -> Plus
arm_2R 4968246..4969010 649..1413 100 -> Plus
arm_2R 4969075..4969402 1414..1741 100 -> Plus
arm_2R 4969470..4969650 1742..1922 100 -> Plus
arm_2R 4969712..4969879 1923..2090 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:25:43 Download gff for LP06581.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9081676..9081877 447..648 100 -> Plus
2R 9081940..9082704 649..1413 100 -> Plus
2R 9082769..9083096 1414..1741 100 -> Plus
2R 9083164..9083344 1742..1922 100 -> Plus
2R 9083406..9083573 1923..2090 100   Plus
2R 9079945..9080140 1..196 100 -> Plus
2R 9081315..9081368 197..250 100 -> Plus
2R 9081427..9081622 251..446 100 -> Plus

LP06581.pep Sequence

Translation from 196 to 2007

> LP06581.pep
MSAESSKGAINNGYELDHKELDIRDSEEFTEHPLDDTSEVANKKGYFEKN
PKVARLVRISIYVLLHLCVVGYFSYATYHYHDITNYECYWKDNPLCGINF
CTGYGMLLLLLGFIYLGLFYYYVFKPMVGHSLHRNYIKPFSKKWHNFSRT
RVVSLASIALLLALLAIFVYFECRDETQKLVSLVAPCFFILCGYVFSTNR
RAINWRIVITGITCQFLLGIFCIRWEVGRKIFECLGNKVATFLGYATDGA
EFVFGDFLVNNNVFAFAILPVIFFFSFFISILYYMGTMQWVVIKLGWILQ
QILGTTVCESVTAAANIFLGMSESPLLIRPYINKLTKSEIHSIMVSGFAT
VSGTVLAAYLSFGASAAHLITSSVMAAPATLAISKLYMPETEESQTSSDS
IELEKSQDSSLLDAASSGASNAVPIVLGIIANIVAFVAFIAFLNGLVSWF
GYLVGLEQIDFEWIFSKLFIPLVWAMGVPKEDCDIIAKVVATKTIINEFV
AYERLGQYIENNDITARSAGIATFAICGFANPSSLGILIGSLSAMAPHRR
STITAVAFRAFVVGSIVCFVSASFAGILIQEDDERANYNRIFEKLGRKNV
TQF*

LP06581.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12225-PA 605 GF12225-PA 1..605 1..603 2673 84.6 Plus
Dana\GF12226-PA 640 GF12226-PA 126..624 95..593 1321 51.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23407-PA 603 GG23407-PA 1..603 1..603 2852 94.7 Plus
Dere\GG23408-PA 605 GG23408-PA 5..577 43..578 1273 48.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21636-PA 588 GH21636-PA 2..587 5..602 2258 74.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
CNT2-PC 603 CG8083-PC 1..603 1..603 3111 100 Plus
CNT2-PA 603 CG8083-PA 1..603 1..603 3111 100 Plus
CNT2-PB 602 CG8083-PB 1..602 1..603 3094 99.8 Plus
CNT1-PB 590 CG11778-PB 6..585 44..582 1398 49.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20090-PA 594 GI20090-PA 1..593 1..601 2279 75.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17614-PA 607 GL17614-PA 1..606 1..602 2560 81.5 Plus
Dper\GL17615-PA 603 GL17615-PA 87..584 95..593 1339 54.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20810-PA 607 GA20810-PA 1..606 1..602 2568 81.7 Plus
Dpse\GA11193-PA 595 GA11193-PA 74..568 82..576 1312 54.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21088-PA 603 GM21088-PA 1..603 1..603 3107 97.3 Plus
Dsec\GM21089-PA 611 GM21089-PA 6..592 44..587 1274 47.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10625-PA 603 GD10625-PA 1..603 1..603 3132 98 Plus
Dsim\GD10626-PA 611 GD10626-PA 11..592 48..587 1274 47.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19856-PA 599 GJ19856-PA 1..597 1..603 2373 75.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17994-PA 600 GK17994-PA 3..598 7..601 2421 77.7 Plus
Dwil\GK14798-PA 625 GK14798-PA 108..623 90..603 1384 53.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19248-PA 603 GE19248-PA 1..603 1..603 3094 96.5 Plus
Dyak\GE19249-PA 533 GE19249-PA 10..522 48..518 1052 45.2 Plus

LP06581.hyp Sequence

Translation from 196 to 2007

> LP06581.hyp
MSAESSKGAINNGYELDHKELDIRDSEEFTEHPLDDTSEVANKKGYFEKN
PKVARLVRISIYVLLHLCVVGYFSYATYHYHDITNYECYWKDNPLCGINF
CTGYGMLLLLLGFIYLGLFYYYVFKPMVGHSLHRNYIKPFSKKWHNFSRT
RVVSLASIALLLALLAIFVYFECRDETQKLVSLVAPCFFILCGYVFSTNR
RAINWRIVITGITCQFLLGIFCIRWEVGRKIFECLGNKVATFLGYATDGA
EFVFGDFLVNNNVFAFAILPVIFFFSFFISILYYMGTMQWVVIKLGWILQ
QILGTTVCESVTAAANIFLGMSESPLLIRPYINKLTKSEIHSIMVSGFAT
VSGTVLAAYLSFGASAAHLITSSVMAAPATLAISKLYMPETEESQTSSDS
IELEKSQDSSLLDAASSGASNAVPIVLGIIANIVAFVAFIAFLNGLVSWF
GYLVGLEQIDFEWIFSKLFIPLVWAMGVPKEDCDIIAKVVATKTIINEFV
AYERLGQYIENNDITARSAGIATFAICGFANPSSLGILIGSLSAMAPHRR
STITAVAFRAFVVGSIVCFVSASFAGILIQEDDERANYNRIFEKLGRKNV
TQF*

LP06581.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8083-PC 603 CG8083-PC 1..603 1..603 3111 100 Plus
CG8083-PA 603 CG8083-PA 1..603 1..603 3111 100 Plus
CG8083-PB 602 CG8083-PB 1..602 1..603 3094 99.8 Plus
CNT1-PB 590 CG11778-PB 6..585 44..582 1398 49.5 Plus