Clone LP06719 Report

Search the DGRC for LP06719

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:67
Well:19
Vector:pOT2
Associated Gene/TranscriptLysS-RA
Protein status:LP06719.pep: gold
Preliminary Size:472
Sequenced Size:501

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1165 2002-01-01 Sim4 clustering to Release 2
CG1165 2002-05-18 Blastp of sequenced clone
CG1165 2003-01-01 Sim4 clustering to Release 3
LysS 2008-04-29 Release 5.5 accounting
LysS 2008-08-15 Release 5.9 accounting
LysS 2008-12-18 5.12 accounting

Clone Sequence Records

LP06719.complete Sequence

501 bp (501 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119049

> LP06719.complete
CAACATGAAGGCTTTCTTTGCTCTGGTGCTCCTGGCCATTGCCGCTCCTG
CCCTGGCAGGTCGCACCCTCGACCGCTGCTCGCTGGCCCGCGAGATGGCC
GACTTGGGAGTTCCCCGCGACCAGCTGGACAAGTGGACCTGCATTGCCCA
GCACGAGAGTGACTACCGCACCTGGGTGGTGGGACCTGCCAACTCCGATG
GCTCCAACGACTACGGAATCTTCCAGATCAACGATCTGTACTGGTGCCAG
GCCGACGGACGCTTCTCCTACAACGAGTGCGGCTTGAGCTGCAATGCCCT
CTTGACCGACGACATCACCAACTCTGTCCGTTGCGCCCAGAAGGTCCTCA
GCCAGCAGGGATGGTCCGCCTGGGCCGTCTGGCATTACTGCAGCGGATGG
TTGCCGTCCATCGATGAGTGCTTCTAAACTGACTTCGACCACAAATAAAA
TCACAAAGAGTACGGAAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A

LP06719.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
LysS-RA 472 LysS-RA 1..472 1..472 2360 100 Plus
LysE-RA 490 LysE-RA 280..474 256..450 705 90.7 Plus
LysD-RA 480 LysD-RA 271..465 256..450 690 90.2 Plus
LysE-RA 490 LysE-RA 80..253 59..232 375 81 Plus
LysD-RA 480 LysD-RA 71..259 59..247 360 79.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1227280..1227750 1..471 2340 99.8 Plus
chr3L 24539361 chr3L 1206913..1207362 2..451 1055 83.2 Plus
chr3L 24539361 chr3L 1212464..1212913 1..450 995 82.3 Plus
chr3L 24539361 chr3L 1210238..1210632 450..59 950 83.3 Minus
chr3L 24539361 chr3L 1217799..1218117 398..83 735 82.8 Minus
chr3L 24539361 chr3L 1194409..1194776 423..59 575 77.7 Minus
chr3L 24539361 chr3L 1210042..1210230 59..247 510 84.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:51:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1227768..1228239 1..472 2360 100 Plus
3L 28110227 3L 1207391..1207840 2..451 1040 83 Plus
3L 28110227 3L 1212948..1213397 1..450 1010 82.6 Plus
3L 28110227 3L 1210732..1211126 450..59 950 83.3 Minus
3L 28110227 3L 1218286..1218595 398..92 735 83.2 Minus
3L 28110227 3L 1194874..1195241 423..59 560 77.4 Minus
3L 28110227 3L 1210536..1210724 59..247 495 84.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1227768..1228239 1..472 2360 100 Plus
3L 28103327 3L 1218286..1218595 398..92 745 83.2 Minus
3L 28103327 3L 1207645..1207840 256..451 740 91.8 Plus
3L 28103327 3L 1213203..1213397 256..450 705 90.7 Plus
3L 28103327 3L 1210732..1210926 450..256 690 90.2 Minus
3L 28103327 3L 1210536..1210724 59..247 495 84.1 Plus
3L 28103327 3L 1195050..1195241 250..59 465 82.8 Minus
3L 28103327 3L 1213003..1213176 59..232 375 81 Plus
3L 28103327 3L 1210938..1211126 247..59 360 79.3 Minus
3L 28103327 3L 1207520..1207633 134..247 255 81.5 Plus
3L 28103327 3L 1194874..1195034 423..263 205 75.1 Minus
Blast to na_te.dros performed on 2019-03-16 22:11:20 has no hits.

LP06719.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:12:21 Download gff for LP06719.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1227280..1227750 1..471 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:37:37 Download gff for LP06719.complete
Subject Subject Range Query Range Percent Splice Strand
LysS-RA 1..423 5..427 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:42:30 Download gff for LP06719.complete
Subject Subject Range Query Range Percent Splice Strand
LysS-RA 1..423 5..427 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:12:14 Download gff for LP06719.complete
Subject Subject Range Query Range Percent Splice Strand
LysS-RA 1..423 5..427 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:34:41 Download gff for LP06719.complete
Subject Subject Range Query Range Percent Splice Strand
LysS-RA 1..423 5..427 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:40 Download gff for LP06719.complete
Subject Subject Range Query Range Percent Splice Strand
LysS-RA 1..423 5..427 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:16:52 Download gff for LP06719.complete
Subject Subject Range Query Range Percent Splice Strand
LysS-RA 1..471 1..471 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:42:30 Download gff for LP06719.complete
Subject Subject Range Query Range Percent Splice Strand
LysS-RA 22..492 1..471 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:14 Download gff for LP06719.complete
Subject Subject Range Query Range Percent Splice Strand
LysS-RA 22..492 1..471 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:34:41 Download gff for LP06719.complete
Subject Subject Range Query Range Percent Splice Strand
LysS-RA 1..471 1..471 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:40 Download gff for LP06719.complete
Subject Subject Range Query Range Percent Splice Strand
LysS-RA 22..492 1..471 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:12:21 Download gff for LP06719.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1227768..1228238 1..471 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:12:21 Download gff for LP06719.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1227768..1228238 1..471 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:12:21 Download gff for LP06719.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1227768..1228238 1..471 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:14 Download gff for LP06719.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1227768..1228238 1..471 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:06:58 Download gff for LP06719.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1227768..1228238 1..471 100   Plus

LP06719.hyp Sequence

Translation from 0 to 426

> LP06719.hyp
NMKAFFALVLLAIAAPALAGRTLDRCSLAREMADLGVPRDQLDKWTCIAQ
HESDYRTWVVGPANSDGSNDYGIFQINDLYWCQADGRFSYNECGLSCNAL
LTDDITNSVRCAQKVLSQQGWSAWAVWHYCSGWLPSIDECF*

LP06719.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
LysS-PA 140 CG1165-PA 1..140 2..141 776 100 Plus
LysB-PB 140 CG1179-PB 1..140 2..141 630 81.6 Plus
LysB-PA 140 CG1179-PA 1..140 2..141 630 81.6 Plus
LysC-PA 140 CG9111-PA 1..140 2..141 629 81.6 Plus
LysD-PA 140 CG9118-PA 1..140 2..141 623 80.9 Plus

LP06719.pep Sequence

Translation from 4 to 426

> LP06719.pep
MKAFFALVLLAIAAPALAGRTLDRCSLAREMADLGVPRDQLDKWTCIAQH
ESDYRTWVVGPANSDGSNDYGIFQINDLYWCQADGRFSYNECGLSCNALL
TDDITNSVRCAQKVLSQQGWSAWAVWHYCSGWLPSIDECF*

LP06719.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24437-PA 140 GF24437-PA 1..140 1..140 656 91.4 Plus
Dana\GF10070-PA 141 GF10070-PA 1..141 1..140 566 71.6 Plus
Dana\GF24436-PA 140 GF24436-PA 1..140 1..140 560 75.9 Plus
Dana\GF10072-PA 140 GF10072-PA 1..140 1..140 557 79.4 Plus
Dana\GF10073-PA 140 GF10073-PA 1..140 1..140 537 77.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14763-PA 140 GG14763-PA 20..140 20..140 619 95 Plus
Dere\GG14620-PA 142 GG14620-PA 1..141 1..140 593 77.3 Plus
Dere\GG14615-PA 141 GG14615-PA 1..141 1..140 583 77.3 Plus
Dere\GG14617-PA 140 GG14617-PA 1..140 1..140 564 78.7 Plus
Dere\GG19822-PA 140 GG19822-PA 1..140 1..140 564 78.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15987-PA 140 GH15987-PA 3..140 4..140 549 73.9 Plus
Dgri\GH15989-PA 140 GH15989-PA 3..140 4..140 549 73.9 Plus
Dgri\GH15486-PA 140 GH15486-PA 3..140 4..140 543 73.2 Plus
Dgri\GH15485-PA 140 GH15485-PA 3..140 4..140 543 73.2 Plus
Dgri\GH15988-PA 143 GH15988-PA 1..143 1..140 514 67.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
LysS-PA 140 CG1165-PA 1..140 1..140 776 100 Plus
LysB-PB 140 CG1179-PB 1..140 1..140 630 81.6 Plus
LysB-PA 140 CG1179-PA 1..140 1..140 630 81.6 Plus
LysD-PA 140 CG9118-PA 1..140 1..140 623 80.9 Plus
LysE-PA 140 CG1180-PA 1..140 1..140 622 81.6 Plus
LysP-PA 141 CG9116-PA 1..141 1..140 582 74.5 Plus
LysX-PA 142 CG9120-PA 1..141 1..140 577 70.9 Plus
CG30062-PB 171 CG30062-PB 23..151 15..140 337 49.2 Plus
CG7798-PA 148 CG7798-PA 1..140 1..140 321 44.4 Plus
CG8492-PD 1360 CG8492-PD 585..724 9..140 241 36.2 Plus
CG8492-PD 1360 CG8492-PD 438..552 19..127 236 41.9 Plus
CG8492-PD 1360 CG8492-PD 184..297 19..126 224 39.1 Plus
CG8492-PD 1360 CG8492-PD 6..133 9..129 208 36.9 Plus
CG16756-PA 152 CG16756-PA 18..137 8..129 196 36.3 Plus
CG11159-PA 146 CG11159-PA 12..146 4..139 195 32.6 Plus
CG16799-PB 179 CG16799-PB 28..145 7..126 162 28.1 Plus
CG16799-PA 179 CG16799-PA 28..145 7..126 162 28.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16637-PA 140 GI16637-PA 1..140 1..140 546 75.2 Plus
Dmoj\GI16638-PA 140 GI16638-PA 1..140 1..140 546 75.2 Plus
Dmoj\GI16642-PA 140 GI16642-PA 1..140 1..140 537 73 Plus
Dmoj\GI16762-PA 140 GI16762-PA 1..140 1..140 532 72.3 Plus
Dmoj\GI16761-PA 140 GI16761-PA 1..140 1..140 531 76.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16159-PA 140 GL16159-PA 1..140 1..140 571 83 Plus
Dper\GL16083-PA 140 GL16083-PA 1..140 1..140 571 83 Plus
Dper\GL14512-PA 140 GL14512-PA 1..140 1..140 571 83 Plus
Dper\GL16157-PA 120 GL16157-PA 1..120 22..140 549 85 Plus
Dper\GL16156-PA 140 GL16156-PA 1..140 1..140 540 79.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11118-PA 141 GA11118-PA 1..141 1..140 708 95 Plus
Dpse\GA28405-PA 140 GA28405-PA 1..140 1..140 615 82.3 Plus
Dpse\GA28479-PA 144 GA28479-PA 1..144 1..140 576 75 Plus
Dpse\GA28409-PA 140 GA28409-PA 1..140 1..140 571 83 Plus
Dpse\GA28406-PA 140 GA28406-PA 1..140 1..140 570 83 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14380-PA 140 GM14380-PA 1..140 1..140 567 79.4 Plus
Dsec\GM14229-PA 140 GM14229-PA 1..140 1..140 567 79.4 Plus
Dsec\GM14378-PA 140 GM14378-PA 1..140 1..140 565 78.7 Plus
Dsec\GM14382-PA 140 GM14382-PA 1..140 1..140 557 79.4 Plus
Dsec\GM14233-PA 149 GM14233-PA 44..130 55..140 361 75.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17618-PA 140 GD17618-PA 1..140 1..140 731 97.9 Plus
Dsim\GD17617-PA 140 GD17617-PA 1..140 1..140 731 97.9 Plus
Dsim\GD13493-PA 160 GD13493-PA 1..141 1..140 574 73 Plus
Dsim\GD13593-PA 140 GD13593-PA 1..140 1..140 565 78.7 Plus
Dsim\GD13594-PA 140 GD13594-PA 1..140 1..140 557 79.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12508-PA 140 GJ12508-PA 1..140 1..140 613 83 Plus
Dvir\GJ12507-PA 140 GJ12507-PA 1..140 1..140 613 83 Plus
Dvir\GJ12895-PA 140 GJ12895-PA 1..140 1..140 608 81.6 Plus
Dvir\GJ12893-PA 140 GJ12893-PA 1..140 1..140 586 77.3 Plus
Dvir\GJ12896-PA 120 GJ12896-PA 1..120 22..140 555 85 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21117-PA 142 GK21117-PA 1..142 1..140 605 85.9 Plus
Dwil\GK12154-PA 141 GK12154-PA 1..141 1..140 579 79.4 Plus
Dwil\GK21084-PA 141 GK21084-PA 1..141 1..140 579 79.4 Plus
Dwil\GK12260-PA 141 GK12260-PA 1..141 1..140 579 79.4 Plus
Dwil\GK21106-PA 141 GK21106-PA 15..141 14..140 570 83.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\LysS-PA 140 GE21126-PA 1..140 1..140 730 98.6 Plus
Dyak\GE21125-PA 140 GE21125-PA 1..140 1..140 582 81.6 Plus
Dyak\GE21123-PA 140 GE21123-PA 1..140 1..140 580 81.6 Plus
Dyak\GE20981-PA 142 GE20981-PA 1..141 1..140 579 75.9 Plus
Dyak\GE20976-PA 141 GE20976-PA 1..141 1..140 577 75.2 Plus