Clone LP06762 Report

Search the DGRC for LP06762

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:67
Well:62
Vector:pOT2
Associated Gene/TranscriptCG9596-RB
Protein status:LP06762.pep: gold
Preliminary Size:1437
Sequenced Size:1435

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9596 2002-01-01 Sim4 clustering to Release 2
CG9596 2002-05-18 Blastp of sequenced clone
CG9596 2003-01-01 Sim4 clustering to Release 3
CG9596 2008-04-29 Release 5.5 accounting
CG9596 2008-08-15 Release 5.9 accounting
CG9596 2008-12-18 5.12 accounting

Clone Sequence Records

LP06762.complete Sequence

1435 bp (1435 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119050

> LP06762.complete
CAAACACGTTGTTTATAAGAATTATAACATAGAGTTGCAACCATGGCCAC
CGAAGAGGACATCCCCAGAATCCAATTGGGCGACTACATCGTCATCCAGC
GGCAGAAATATACGAAGCTACAAAAATTCGGCAGTCTGGACACCACGGCC
ACATTGGGCAAAGAAACACTGGAGCTGAAGTCTCTTTTGGACCAACCCTA
TGGCTCCACGTTCAAGATGTGCGTCAAAGAGACAAAGCCGGGTAAAAGGG
GCGCCCAGAGACAACACACCTTGGAGCTGTGCAGCGAGACTGAGCTGAGA
AGCACGCGAGAGGTTCTGGGCATCTCCAGCAGTGGAGCGGATAATCGGGA
CATCCGGGATGATGGAGAAGCGCAGACCCTGAAACCAGAGGACATTGCGC
AGCTGCGTGAGGAGTGCAACGACTCCAGCAAAATCATCGAGAAGCTGGTG
GAGAATTCTAAGACTTTCCACAACCGAACGGAGTACTCCCAAGAGAAGTA
CCTGCTAAAGAAGGAGAAAAAGTATTTCGAGTTCGTTCAAATCCGCCAGC
CAACGATCCGTCTGATGCTGGACATCTTCTACCGCCAAGACTCGGAAAAG
GTCATGGGCATTCGCGTTGACACTTTATCGCAAATTATTTCTTACTCGGG
CGTTTGTGGATTCGGCAGCTATCTGCTGTACGAGAGTGGTACCAATGGTC
TACTGCCGGCTGCCATGCTCAACTCTATAGGCGCAGGCACGGAGGGCACC
CTGGTGCACATGCACCCGGGCAATGTGCCCCAGAAGCAGGCGCTCTCAGC
TCTGAAACTACCCCTGGAGCAGCAACAGCGATGTGTTTCCGTTAATCTCT
ATTCCGTTTTAAGGGAGTTTTACCAAGGAGGGGACGCGAAGGCCACAGAT
ATTCCCGTTGTGGAGCCCAGTGAAAACGAACCTCAGGAAACCCAGCTGGA
GACGCCAACGGAGGAACAACCTGAGGCGATAGAACCGACCACAAAGAAAC
CCAAGCTGGATGAGTCAAATAGTGGTAGAGAAGGAGCAAAGGGACCTCCG
CGCTGGCATTTGGAAAACAAGCGGGCCACGGCCCTGATGCACGCCGAATT
CGACAGTCTGGTGGTGGCCGCCAAGGAGCACCCATCCAACATTCTGCAAG
CCCTGCTGCCTCTTGTGAAACCCTCAAGACCCGTGGTGGTATTCAGCACC
TGCAAGGAGCTGTTACAAGAGACATTCATGGAGCTGAAAACAACAGGCAA
GGTGACGGGTCTGCACTTGACCTCGAACTGGCTGCGCACCTACCAGATCC
TGCCCAATCGCACACATCCGGAAGTGAATATGAGCGGAAATAGTGGCTAC
CTTTTGACGGGCTATACGCTTAGATAGTTGTTGTGCGTCTAACAAATACA
TGTAAGCCTTTGTTTTGATAAAAAAAAAAAAAAAA

LP06762.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9596-RB 1557 CG9596-RB 96..1516 1..1421 7105 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6559555..6560588 1034..1 5095 99.5 Minus
chr2L 23010047 chr2L 6559110..6559497 1419..1032 1910 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:51:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6560576..6561609 1034..1 5170 100 Minus
2L 23513712 2L 6560129..6560518 1421..1032 1950 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6560576..6561609 1034..1 5170 100 Minus
2L 23513712 2L 6560129..6560518 1421..1032 1950 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:33:23 has no hits.

LP06762.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:34:01 Download gff for LP06762.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6559110..6559495 1034..1419 99 <- Minus
chr2L 6559556..6560588 1..1033 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:37:41 Download gff for LP06762.complete
Subject Subject Range Query Range Percent Splice Strand
CG9596-RB 1..1335 43..1377 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:42:31 Download gff for LP06762.complete
Subject Subject Range Query Range Percent Splice Strand
CG9596-RB 1..1335 43..1377 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:25:02 Download gff for LP06762.complete
Subject Subject Range Query Range Percent Splice Strand
CG9596-RB 1..1335 43..1377 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:34:42 Download gff for LP06762.complete
Subject Subject Range Query Range Percent Splice Strand
CG9596-RB 1..1335 43..1377 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:28:06 Download gff for LP06762.complete
Subject Subject Range Query Range Percent Splice Strand
CG9596-RB 1..1335 43..1377 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:16:54 Download gff for LP06762.complete
Subject Subject Range Query Range Percent Splice Strand
CG9596-RB 52..1470 1..1419 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:42:31 Download gff for LP06762.complete
Subject Subject Range Query Range Percent Splice Strand
CG9596-RB 52..1470 1..1419 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:25:02 Download gff for LP06762.complete
Subject Subject Range Query Range Percent Splice Strand
CG9596-RB 52..1470 1..1419 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:34:42 Download gff for LP06762.complete
Subject Subject Range Query Range Percent Splice Strand
CG9596-RB 1..1419 1..1419 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:28:06 Download gff for LP06762.complete
Subject Subject Range Query Range Percent Splice Strand
CG9596-RB 52..1470 1..1419 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:34:01 Download gff for LP06762.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6560131..6560516 1034..1419 100 <- Minus
2L 6560577..6561609 1..1033 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:34:01 Download gff for LP06762.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6560131..6560516 1034..1419 100 <- Minus
2L 6560577..6561609 1..1033 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:34:01 Download gff for LP06762.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6560131..6560516 1034..1419 100 <- Minus
2L 6560577..6561609 1..1033 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:25:02 Download gff for LP06762.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6560131..6560516 1034..1419 100 <- Minus
arm_2L 6560577..6561609 1..1033 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:06:59 Download gff for LP06762.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6560131..6560516 1034..1419 100 <- Minus
2L 6560577..6561609 1..1033 100   Minus

LP06762.pep Sequence

Translation from 42 to 1376

> LP06762.pep
MATEEDIPRIQLGDYIVIQRQKYTKLQKFGSLDTTATLGKETLELKSLLD
QPYGSTFKMCVKETKPGKRGAQRQHTLELCSETELRSTREVLGISSSGAD
NRDIRDDGEAQTLKPEDIAQLREECNDSSKIIEKLVENSKTFHNRTEYSQ
EKYLLKKEKKYFEFVQIRQPTIRLMLDIFYRQDSEKVMGIRVDTLSQIIS
YSGVCGFGSYLLYESGTNGLLPAAMLNSIGAGTEGTLVHMHPGNVPQKQA
LSALKLPLEQQQRCVSVNLYSVLREFYQGGDAKATDIPVVEPSENEPQET
QLETPTEEQPEAIEPTTKKPKLDESNSGREGAKGPPRWHLENKRATALMH
AEFDSLVVAAKEHPSNILQALLPLVKPSRPVVVFSTCKELLQETFMELKT
TGKVTGLHLTSNWLRTYQILPNRTHPEVNMSGNSGYLLTGYTLR*

LP06762.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15697-PA 437 GF15697-PA 4..437 8..444 2085 89.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23610-PA 444 GG23610-PA 1..444 1..444 2292 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13028-PA 444 GH13028-PA 4..444 7..444 1845 81.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9596-PD 444 CG9596-PD 1..444 1..444 2287 100 Plus
CG9596-PC 444 CG9596-PC 1..444 1..444 2287 100 Plus
CG9596-PB 444 CG9596-PB 1..444 1..444 2287 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18178-PA 432 GI18178-PA 4..432 10..444 1792 80.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26092-PA 438 GL26092-PA 1..438 1..444 1949 85.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21902-PA 438 GA21902-PA 1..438 1..444 1940 85.4 Plus
Dpse\GA28174-PA 438 GA28174-PA 1..438 1..444 1933 85.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14132-PA 444 GM14132-PA 1..444 1..444 2302 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22565-PA 444 GD22565-PA 1..444 1..444 2313 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14638-PA 446 GJ14638-PA 1..446 7..444 1803 79.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14794-PA 442 GK14794-PA 7..442 8..444 1855 82.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18430-PA 444 GE18430-PA 1..444 1..444 2197 95.9 Plus

LP06762.hyp Sequence

Translation from 42 to 1376

> LP06762.hyp
MATEEDIPRIQLGDYIVIQRQKYTKLQKFGSLDTTATLGKETLELKSLLD
QPYGSTFKMCVKETKPGKRGAQRQHTLELCSETELRSTREVLGISSSGAD
NRDIRDDGEAQTLKPEDIAQLREECNDSSKIIEKLVENSKTFHNRTEYSQ
EKYLLKKEKKYFEFVQIRQPTIRLMLDIFYRQDSEKVMGIRVDTLSQIIS
YSGVCGFGSYLLYESGTNGLLPAAMLNSIGAGTEGTLVHMHPGNVPQKQA
LSALKLPLEQQQRCVSVNLYSVLREFYQGGDAKATDIPVVEPSENEPQET
QLETPTEEQPEAIEPTTKKPKLDESNSGREGAKGPPRWHLENKRATALMH
AEFDSLVVAAKEHPSNILQALLPLVKPSRPVVVFSTCKELLQETFMELKT
TGKVTGLHLTSNWLRTYQILPNRTHPEVNMSGNSGYLLTGYTLR*

LP06762.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9596-PD 444 CG9596-PD 1..444 1..444 2287 100 Plus
CG9596-PC 444 CG9596-PC 1..444 1..444 2287 100 Plus
CG9596-PB 444 CG9596-PB 1..444 1..444 2287 100 Plus