BDGP Sequence Production Resources |
Search the DGRC for LP06848
Library: | LP |
Tissue Source: | Drosophila melanogaster larval-early pupal |
Created by: | Ling Hong |
Date Registered: | 1998-06-11 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 68 |
Well: | 48 |
Vector: | pOT2 |
Associated Gene/Transcript | Trf4-2-RA |
Protein status: | LP06848.pep: gold |
Preliminary Size: | 1473 |
Sequenced Size: | 1555 |
Gene | Date | Evidence |
---|---|---|
CG17462 | 2002-01-01 | Sim4 clustering to Release 2 |
CG17462 | 2002-05-18 | Blastp of sequenced clone |
CG17462 | 2003-01-01 | Sim4 clustering to Release 3 |
CG17462 | 2008-04-29 | Release 5.5 accounting |
CG17462 | 2008-08-15 | Release 5.9 accounting |
CG17462 | 2008-12-18 | 5.12 accounting |
1555 bp (1555 high quality bases) assembled on 2002-05-18
GenBank Submission: AY119052
> LP06848.complete CTCGCCAGTTCTTGTGTTATTTTTTTTTAAATTTGACTTATCTTTTATTC AAATTGAGAAAACTTTGACTACTACGTTCTTTTACACCAAAAGGAATCAG TTGGCATTCCAGTTCGGATAACGGCACTATTCGCGTTTTACAGATTCCTT CGTTTCTCGTCCGTATTCTTCTTTCTATCTCCGTCACACTTATATTTTTC TTTCTCTCAATTCCTTTTTCGCGTAAAGCAATACGCGGGACGCAAAATGT GTGACGAAGCGAATCCAGCGAAGCCGTGGCAGCTTCCCGATGTGGTGTAC GGCAATGGGATTCCGGCGCTGTGCCTGCTGCACCAGGAGATCGAGCAGTT CTACAACTACATCCGGTCCACGCCAACAGAGTTCTGCTTGCGGGCAGGTG CAGTGCGTCGCATCGAGGATGTGGTGCTTTCCATTTGGCCAAGCGCATCC GTCGATCTCTTTGGCTCATTTCGGACCGGGCTAAATCTGCCGGACTCGGA CATTGATCTGGTTGTGTACTATAAGTTCTGGAACCCCAGGCTGCTGCATG AGCTTCAAAACGAACTAGTCAGCCAAGGAGTAACTGATCCGGACACTGTG ACCGTCCTCGACAAGGCCTCTGTGCCAGTGGTCAAGTTTACGGACCTCAT TTCCCGCATCAGGTTCGATGTGACCTTCAACTCCGTAGCATCCGGCGTTC AGGCCGCCGACCTGATCAAGGACTTTATCCGCCATTTTCCCGAACTACCC AAACTGGTCATGGTGCTCAAGCAGTTCCTCAGCCTTCACGGATTCAACGA GGTCTACAACTCCGGCGGAGTCTCGTCCTACGCACTCACGCTAATGGTGA TCAGCTTTCTGCAGCAGCATGCGCGCTCCAACAGGCGTTTAAGTGAACAC AGTAAGCTGGCCCTGCTGCTCATTCAGTTTCTAGACTACTACGGCCGCAA GTTTGACTTCTTCAAGTATGGAATTTCTGTCCTCGGCCAAGGCGGTTGCG TGGAGAAGGCTCGACTTCGCTCCACGCTCGGCGAGAACAACTGGCAGTCG GTGCTTTGCATAGAGGATCCAGTGACGCCGACCAACGACATAGGGAGGAG CTCCTATGGGGTGCTCGGCGTGATGCAGGGATTCGGGGCAGCCTTCGTGA AGCTCTCGAAGCTGGTGGACTCCGACTCGTCCAAGATCGTCGGCCCCATA CTGGCCAACATTGTAGAGGTGCCGCAGTCCATCATCAACTACCGGGCTTG GGTGCACTACAACTTCCAGCACCTTTTGACACCGGAATTGCCTTGTGCCG ATTCCCTTGTACAACCGTCGCCTACGGGATCCACATCCCCCTCCGCCTCC GCCTCCGCCTCCGAGGATGAGCGCTCGGGCGGGCCGGCTACTATTGGATT CGGCCGATGTGATGATCCTCCCCAAAACATAGACATAGTTGCCGACCTTG CAAACCTTAAGATGAATTAAGAATGGTACGCTTATACTACCAGTGATTTT TAAAAACTAATTATATCTTTTTATTAGCATAAAAAAAAAAAAAAAAAAAA AAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Trf4-2-RA | 1639 | Trf4-2-RA | 110..1639 | 1..1530 | 7650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 20748511..20750040 | 1..1530 | 7650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 24925325..24926855 | 1..1531 | 7655 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 24666156..24667686 | 1..1531 | 7655 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 20748511..20750040 | 1..1530 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17462-RA | 1..1224 | 247..1470 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trf4-2-RA | 1..1224 | 247..1470 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trf4-2-RA | 1..1224 | 247..1470 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17462-RA | 1..1224 | 247..1470 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trf4-2-RA | 1..1224 | 247..1470 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17462-RA | 21..1550 | 1..1530 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trf4-2-RA | 110..1639 | 1..1530 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trf4-2-RA | 110..1639 | 1..1530 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17462-RA | 21..1550 | 1..1530 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trf4-2-RA | 110..1639 | 1..1530 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24925325..24926854 | 1..1530 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24925325..24926854 | 1..1530 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24925325..24926854 | 1..1530 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 20751047..20752576 | 1..1530 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24666156..24667685 | 1..1530 | 100 | Plus |
Translation from 246 to 1469
> LP06848.hyp MCDEANPAKPWQLPDVVYGNGIPALCLLHQEIEQFYNYIRSTPTEFCLRA GAVRRIEDVVLSIWPSASVDLFGSFRTGLNLPDSDIDLVVYYKFWNPRLL HELQNELVSQGVTDPDTVTVLDKASVPVVKFTDLISRIRFDVTFNSVASG VQAADLIKDFIRHFPELPKLVMVLKQFLSLHGFNEVYNSGGVSSYALTLM VISFLQQHARSNRRLSEHSKLALLLIQFLDYYGRKFDFFKYGISVLGQGG CVEKARLRSTLGENNWQSVLCIEDPVTPTNDIGRSSYGVLGVMQGFGAAF VKLSKLVDSDSSKIVGPILANIVEVPQSIINYRAWVHYNFQHLLTPELPC ADSLVQPSPTGSTSPSASASASEDERSGGPATIGFGRCDDPPQNIDIVAD LANLKMN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Trf4-2-PB | 407 | CG17462-PB | 1..407 | 1..407 | 2116 | 100 | Plus |
Trf4-2-PA | 407 | CG17462-PA | 1..407 | 1..407 | 2116 | 100 | Plus |
Trf4-1-PG | 802 | CG11265-PG | 56..409 | 9..372 | 772 | 45.9 | Plus |
Trf4-1-PF | 802 | CG11265-PF | 56..409 | 9..372 | 772 | 45.9 | Plus |
Trf4-1-PJ | 1001 | CG11265-PJ | 255..608 | 9..372 | 772 | 45.9 | Plus |
Translation from 246 to 1469
> LP06848.pep MCDEANPAKPWQLPDVVYGNGIPALCLLHQEIEQFYNYIRSTPTEFCLRA GAVRRIEDVVLSIWPSASVDLFGSFRTGLNLPDSDIDLVVYYKFWNPRLL HELQNELVSQGVTDPDTVTVLDKASVPVVKFTDLISRIRFDVTFNSVASG VQAADLIKDFIRHFPELPKLVMVLKQFLSLHGFNEVYNSGGVSSYALTLM VISFLQQHARSNRRLSEHSKLALLLIQFLDYYGRKFDFFKYGISVLGQGG CVEKARLRSTLGENNWQSVLCIEDPVTPTNDIGRSSYGVLGVMQGFGAAF VKLSKLVDSDSSKIVGPILANIVEVPQSIINYRAWVHYNFQHLLTPELPC ADSLVQPSPTGSTSPSASASASEDERSGGPATIGFGRCDDPPQNIDIVAD LANLKMN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16314-PA | 394 | GF16314-PA | 5..387 | 1..385 | 1369 | 68.5 | Plus |
Dana\GF21834-PA | 1092 | GF21834-PA | 337..669 | 8..344 | 773 | 48.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11338-PA | 405 | GG11338-PA | 1..405 | 1..407 | 1737 | 81.7 | Plus |
Dere\GG18260-PA | 1008 | GG18260-PA | 242..574 | 8..344 | 772 | 47.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19417-PA | 340 | GH19417-PA | 7..328 | 9..343 | 968 | 57.9 | Plus |
Dgri\GH24509-PA | 489 | GH24509-PA | 253..480 | 10..245 | 580 | 51.7 | Plus |
Dgri\GH13010-PA | 359 | GH13010-PA | 17..316 | 10..321 | 566 | 42 | Plus |
Dgri\GH24510-PA | 575 | GH24510-PA | 8..87 | 268..343 | 180 | 45 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Trf4-2-PB | 407 | CG17462-PB | 1..407 | 1..407 | 2116 | 100 | Plus |
Trf4-2-PA | 407 | CG17462-PA | 1..407 | 1..407 | 2116 | 100 | Plus |
Trf4-1-PG | 802 | CG11265-PG | 56..409 | 9..372 | 772 | 45.9 | Plus |
Trf4-1-PF | 802 | CG11265-PF | 56..409 | 9..372 | 772 | 45.9 | Plus |
Trf4-1-PJ | 1001 | CG11265-PJ | 255..608 | 9..372 | 772 | 45.9 | Plus |
Trf4-1-PI | 1001 | CG11265-PI | 255..608 | 9..372 | 772 | 45.9 | Plus |
Trf4-1-PH | 1001 | CG11265-PH | 255..608 | 9..372 | 772 | 45.9 | Plus |
Trf4-1-PE | 1001 | CG11265-PE | 255..608 | 9..372 | 772 | 45.9 | Plus |
Trf4-1-PC | 1001 | CG11265-PC | 255..608 | 9..372 | 772 | 45.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22217-PA | 397 | GI22217-PA | 1..338 | 1..343 | 974 | 59.9 | Plus |
Dmoj\GI15833-PA | 807 | GI15833-PA | 285..614 | 10..343 | 739 | 47.1 | Plus |
Dmoj\GI12386-PA | 348 | GI12386-PA | 11..340 | 10..347 | 568 | 39.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24402-PA | 400 | GL24402-PA | 1..345 | 1..344 | 1192 | 64.5 | Plus |
Dper\GL14678-PA | 1197 | GL14678-PA | 295..627 | 8..344 | 778 | 47.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14518-PA | 400 | GA14518-PA | 1..345 | 1..344 | 1209 | 64.5 | Plus |
Dpse\GA10875-PA | 1202 | GA10875-PA | 294..626 | 8..344 | 778 | 47.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17772-PA | 403 | GM17772-PA | 1..403 | 1..407 | 1996 | 93.4 | Plus |
Dsec\GM26647-PA | 403 | GM26647-PA | 1..403 | 1..407 | 1996 | 93.4 | Plus |
Dsec\GM17777-PA | 236 | GM17777-PA | 1..222 | 1..222 | 1126 | 95 | Plus |
Dsec\GM21691-PA | 1000 | GM21691-PA | 255..587 | 8..344 | 781 | 48.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21148-PA | 403 | GD21148-PA | 1..403 | 1..407 | 2006 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24338-PA | 397 | GJ24338-PA | 1..339 | 1..344 | 1073 | 62.6 | Plus |
Dvir\GJ18687-PA | 1111 | GJ18687-PA | 254..583 | 10..343 | 766 | 47.6 | Plus |
Dvir\GJ17879-PA | 416 | GJ17879-PA | 11..342 | 10..347 | 645 | 42.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25231-PA | 1048 | GK25231-PA | 271..601 | 10..344 | 775 | 48.4 | Plus |