Clone LP06848 Report

Search the DGRC for LP06848

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:68
Well:48
Vector:pOT2
Associated Gene/TranscriptTrf4-2-RA
Protein status:LP06848.pep: gold
Preliminary Size:1473
Sequenced Size:1555

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17462 2002-01-01 Sim4 clustering to Release 2
CG17462 2002-05-18 Blastp of sequenced clone
CG17462 2003-01-01 Sim4 clustering to Release 3
CG17462 2008-04-29 Release 5.5 accounting
CG17462 2008-08-15 Release 5.9 accounting
CG17462 2008-12-18 5.12 accounting

Clone Sequence Records

LP06848.complete Sequence

1555 bp (1555 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119052

> LP06848.complete
CTCGCCAGTTCTTGTGTTATTTTTTTTTAAATTTGACTTATCTTTTATTC
AAATTGAGAAAACTTTGACTACTACGTTCTTTTACACCAAAAGGAATCAG
TTGGCATTCCAGTTCGGATAACGGCACTATTCGCGTTTTACAGATTCCTT
CGTTTCTCGTCCGTATTCTTCTTTCTATCTCCGTCACACTTATATTTTTC
TTTCTCTCAATTCCTTTTTCGCGTAAAGCAATACGCGGGACGCAAAATGT
GTGACGAAGCGAATCCAGCGAAGCCGTGGCAGCTTCCCGATGTGGTGTAC
GGCAATGGGATTCCGGCGCTGTGCCTGCTGCACCAGGAGATCGAGCAGTT
CTACAACTACATCCGGTCCACGCCAACAGAGTTCTGCTTGCGGGCAGGTG
CAGTGCGTCGCATCGAGGATGTGGTGCTTTCCATTTGGCCAAGCGCATCC
GTCGATCTCTTTGGCTCATTTCGGACCGGGCTAAATCTGCCGGACTCGGA
CATTGATCTGGTTGTGTACTATAAGTTCTGGAACCCCAGGCTGCTGCATG
AGCTTCAAAACGAACTAGTCAGCCAAGGAGTAACTGATCCGGACACTGTG
ACCGTCCTCGACAAGGCCTCTGTGCCAGTGGTCAAGTTTACGGACCTCAT
TTCCCGCATCAGGTTCGATGTGACCTTCAACTCCGTAGCATCCGGCGTTC
AGGCCGCCGACCTGATCAAGGACTTTATCCGCCATTTTCCCGAACTACCC
AAACTGGTCATGGTGCTCAAGCAGTTCCTCAGCCTTCACGGATTCAACGA
GGTCTACAACTCCGGCGGAGTCTCGTCCTACGCACTCACGCTAATGGTGA
TCAGCTTTCTGCAGCAGCATGCGCGCTCCAACAGGCGTTTAAGTGAACAC
AGTAAGCTGGCCCTGCTGCTCATTCAGTTTCTAGACTACTACGGCCGCAA
GTTTGACTTCTTCAAGTATGGAATTTCTGTCCTCGGCCAAGGCGGTTGCG
TGGAGAAGGCTCGACTTCGCTCCACGCTCGGCGAGAACAACTGGCAGTCG
GTGCTTTGCATAGAGGATCCAGTGACGCCGACCAACGACATAGGGAGGAG
CTCCTATGGGGTGCTCGGCGTGATGCAGGGATTCGGGGCAGCCTTCGTGA
AGCTCTCGAAGCTGGTGGACTCCGACTCGTCCAAGATCGTCGGCCCCATA
CTGGCCAACATTGTAGAGGTGCCGCAGTCCATCATCAACTACCGGGCTTG
GGTGCACTACAACTTCCAGCACCTTTTGACACCGGAATTGCCTTGTGCCG
ATTCCCTTGTACAACCGTCGCCTACGGGATCCACATCCCCCTCCGCCTCC
GCCTCCGCCTCCGAGGATGAGCGCTCGGGCGGGCCGGCTACTATTGGATT
CGGCCGATGTGATGATCCTCCCCAAAACATAGACATAGTTGCCGACCTTG
CAAACCTTAAGATGAATTAAGAATGGTACGCTTATACTACCAGTGATTTT
TAAAAACTAATTATATCTTTTTATTAGCATAAAAAAAAAAAAAAAAAAAA
AAAAA

LP06848.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
Trf4-2-RA 1639 Trf4-2-RA 110..1639 1..1530 7650 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20748511..20750040 1..1530 7650 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:51:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24925325..24926855 1..1531 7655 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24666156..24667686 1..1531 7655 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:17:05 has no hits.

LP06848.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:17:40 Download gff for LP06848.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20748511..20750040 1..1530 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:37:45 Download gff for LP06848.complete
Subject Subject Range Query Range Percent Splice Strand
CG17462-RA 1..1224 247..1470 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:42:18 Download gff for LP06848.complete
Subject Subject Range Query Range Percent Splice Strand
Trf4-2-RA 1..1224 247..1470 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:15:38 Download gff for LP06848.complete
Subject Subject Range Query Range Percent Splice Strand
Trf4-2-RA 1..1224 247..1470 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:34:25 Download gff for LP06848.complete
Subject Subject Range Query Range Percent Splice Strand
CG17462-RA 1..1224 247..1470 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:45 Download gff for LP06848.complete
Subject Subject Range Query Range Percent Splice Strand
Trf4-2-RA 1..1224 247..1470 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:16:36 Download gff for LP06848.complete
Subject Subject Range Query Range Percent Splice Strand
CG17462-RA 21..1550 1..1530 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:42:18 Download gff for LP06848.complete
Subject Subject Range Query Range Percent Splice Strand
Trf4-2-RA 110..1639 1..1530 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:15:38 Download gff for LP06848.complete
Subject Subject Range Query Range Percent Splice Strand
Trf4-2-RA 110..1639 1..1530 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:34:26 Download gff for LP06848.complete
Subject Subject Range Query Range Percent Splice Strand
CG17462-RA 21..1550 1..1530 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:45 Download gff for LP06848.complete
Subject Subject Range Query Range Percent Splice Strand
Trf4-2-RA 110..1639 1..1530 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:40 Download gff for LP06848.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24925325..24926854 1..1530 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:40 Download gff for LP06848.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24925325..24926854 1..1530 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:40 Download gff for LP06848.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24925325..24926854 1..1530 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:15:38 Download gff for LP06848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20751047..20752576 1..1530 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:06:46 Download gff for LP06848.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24666156..24667685 1..1530 100   Plus

LP06848.hyp Sequence

Translation from 246 to 1469

> LP06848.hyp
MCDEANPAKPWQLPDVVYGNGIPALCLLHQEIEQFYNYIRSTPTEFCLRA
GAVRRIEDVVLSIWPSASVDLFGSFRTGLNLPDSDIDLVVYYKFWNPRLL
HELQNELVSQGVTDPDTVTVLDKASVPVVKFTDLISRIRFDVTFNSVASG
VQAADLIKDFIRHFPELPKLVMVLKQFLSLHGFNEVYNSGGVSSYALTLM
VISFLQQHARSNRRLSEHSKLALLLIQFLDYYGRKFDFFKYGISVLGQGG
CVEKARLRSTLGENNWQSVLCIEDPVTPTNDIGRSSYGVLGVMQGFGAAF
VKLSKLVDSDSSKIVGPILANIVEVPQSIINYRAWVHYNFQHLLTPELPC
ADSLVQPSPTGSTSPSASASASEDERSGGPATIGFGRCDDPPQNIDIVAD
LANLKMN*

LP06848.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
Trf4-2-PB 407 CG17462-PB 1..407 1..407 2116 100 Plus
Trf4-2-PA 407 CG17462-PA 1..407 1..407 2116 100 Plus
Trf4-1-PG 802 CG11265-PG 56..409 9..372 772 45.9 Plus
Trf4-1-PF 802 CG11265-PF 56..409 9..372 772 45.9 Plus
Trf4-1-PJ 1001 CG11265-PJ 255..608 9..372 772 45.9 Plus

LP06848.pep Sequence

Translation from 246 to 1469

> LP06848.pep
MCDEANPAKPWQLPDVVYGNGIPALCLLHQEIEQFYNYIRSTPTEFCLRA
GAVRRIEDVVLSIWPSASVDLFGSFRTGLNLPDSDIDLVVYYKFWNPRLL
HELQNELVSQGVTDPDTVTVLDKASVPVVKFTDLISRIRFDVTFNSVASG
VQAADLIKDFIRHFPELPKLVMVLKQFLSLHGFNEVYNSGGVSSYALTLM
VISFLQQHARSNRRLSEHSKLALLLIQFLDYYGRKFDFFKYGISVLGQGG
CVEKARLRSTLGENNWQSVLCIEDPVTPTNDIGRSSYGVLGVMQGFGAAF
VKLSKLVDSDSSKIVGPILANIVEVPQSIINYRAWVHYNFQHLLTPELPC
ADSLVQPSPTGSTSPSASASASEDERSGGPATIGFGRCDDPPQNIDIVAD
LANLKMN*

LP06848.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16314-PA 394 GF16314-PA 5..387 1..385 1369 68.5 Plus
Dana\GF21834-PA 1092 GF21834-PA 337..669 8..344 773 48.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11338-PA 405 GG11338-PA 1..405 1..407 1737 81.7 Plus
Dere\GG18260-PA 1008 GG18260-PA 242..574 8..344 772 47.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19417-PA 340 GH19417-PA 7..328 9..343 968 57.9 Plus
Dgri\GH24509-PA 489 GH24509-PA 253..480 10..245 580 51.7 Plus
Dgri\GH13010-PA 359 GH13010-PA 17..316 10..321 566 42 Plus
Dgri\GH24510-PA 575 GH24510-PA 8..87 268..343 180 45 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
Trf4-2-PB 407 CG17462-PB 1..407 1..407 2116 100 Plus
Trf4-2-PA 407 CG17462-PA 1..407 1..407 2116 100 Plus
Trf4-1-PG 802 CG11265-PG 56..409 9..372 772 45.9 Plus
Trf4-1-PF 802 CG11265-PF 56..409 9..372 772 45.9 Plus
Trf4-1-PJ 1001 CG11265-PJ 255..608 9..372 772 45.9 Plus
Trf4-1-PI 1001 CG11265-PI 255..608 9..372 772 45.9 Plus
Trf4-1-PH 1001 CG11265-PH 255..608 9..372 772 45.9 Plus
Trf4-1-PE 1001 CG11265-PE 255..608 9..372 772 45.9 Plus
Trf4-1-PC 1001 CG11265-PC 255..608 9..372 772 45.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22217-PA 397 GI22217-PA 1..338 1..343 974 59.9 Plus
Dmoj\GI15833-PA 807 GI15833-PA 285..614 10..343 739 47.1 Plus
Dmoj\GI12386-PA 348 GI12386-PA 11..340 10..347 568 39.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24402-PA 400 GL24402-PA 1..345 1..344 1192 64.5 Plus
Dper\GL14678-PA 1197 GL14678-PA 295..627 8..344 778 47.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14518-PA 400 GA14518-PA 1..345 1..344 1209 64.5 Plus
Dpse\GA10875-PA 1202 GA10875-PA 294..626 8..344 778 47.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17772-PA 403 GM17772-PA 1..403 1..407 1996 93.4 Plus
Dsec\GM26647-PA 403 GM26647-PA 1..403 1..407 1996 93.4 Plus
Dsec\GM17777-PA 236 GM17777-PA 1..222 1..222 1126 95 Plus
Dsec\GM21691-PA 1000 GM21691-PA 255..587 8..344 781 48.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21148-PA 403 GD21148-PA 1..403 1..407 2006 93.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24338-PA 397 GJ24338-PA 1..339 1..344 1073 62.6 Plus
Dvir\GJ18687-PA 1111 GJ18687-PA 254..583 10..343 766 47.6 Plus
Dvir\GJ17879-PA 416 GJ17879-PA 11..342 10..347 645 42.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25231-PA 1048 GK25231-PA 271..601 10..344 775 48.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23533-PA 405 GE23533-PA 1..405 1..407 1759 83.1 Plus
Dyak\GE15792-PA 1014 GE15792-PA 243..575 8..344 778 48.1 Plus