Clone LP06940 Report

Search the DGRC for LP06940

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:69
Well:40
Vector:pOT2
Associated Gene/TranscriptCG6788-RA
Protein status:LP06940.pep: gold
Preliminary Size:845
Sequenced Size:1167

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6788 2002-01-01 Sim4 clustering to Release 2
CG6788 2002-05-18 Blastp of sequenced clone
CG32496 2003-01-01 Sim4 clustering to Release 3
CG6788 2003-01-01 Sim4 clustering to Release 3
CG6788 2008-04-29 Release 5.5 accounting
CG6788 2008-08-15 Release 5.9 accounting
CG6788 2008-12-18 5.12 accounting

Clone Sequence Records

LP06940.complete Sequence

1167 bp (1167 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119053

> LP06940.complete
GCACAGTTCGCATGTTCAGGATAATGAAAACCGCATACCTCATCCTGATT
CTTTCGCTCTCGATATCCACTTCCTTGGCTAACGATCCGCAGAGGTCCTT
CGATCAGAATGCGGACAATCCGTGCAGTGCTCACCGCATTTGGGTTTGGA
GACCCATCCTCGATCGATTCGCCAAGGTGAACTCCAGCGATGAGCTGAAG
AACCAGGTCAACGCCATGTCGGAAACCATCAAGGACCTGCAGACGCGCAT
TGGCCACAAGAACGAGCTGCTCCTGCTGCAAGCCGGTCAGATCAAGGACC
AAAGTGCCAGGCTCAACGTTTTGATCAAAAACATGAAAGTCCTTCGAAGT
GAGTGTCTGAATGCCCAGGCGGAGATCAAAAGCAAGGACATACAAATACA
ATTGAGCGCGGCAAAGATCAAGCAAATGAGCAACGAACTGGTGACGCAGT
GCAGCCGCCAGGACACGTGTCCCATCGACGGCAAAGGTGGCATCTATAAG
CTGAAGATCCGTGAATTGCCAGCATTCGAGGCGCCGTGCAGTTCCAACGG
CTGGTTGACCATACAGAAACGATACGATGGCGCCGAGAACTTCGATCGCG
GTTGGAAGGACTACAAGGATGGTTTCGGACGCGTGAGAGGTGAGTTTTTC
ATCGGCCTGGAGAAAGTGCACCTTATGACGCGGCAACGACGCCACGAACT
GTACATTAAGCTGGGCAAGATTGATGGCACCACTAGCCACGCCCACTACG
ACAACTTCGAACTCGGCGGCGAGATTGAATCCTATGAGCTAAAGTCACTG
GGCCGCTACAATGGCACAGCCGGCGATTCTCTGCGGCCACATGAGCGCCA
AAAGTTCACCACCAACGACAAGGACAACGATGCCTATCGGTTCAACTGTG
CCGCCGACGAATATGGTGGCTGGTGGTACTACGATTGCGCCAAGAGCATG
CTCAATGGCAAGTTCTACAAGGAGGGCCGCTCGCGGAATGGAAAAACCAA
TGGCATCCTGTGGGGCTCCTGGCACAACAACGATTGGACCTACTCGCTAA
CCTTCGTGGAGATGATGATAAGGCCGCGAATAGATTAGCTATTACAGTAA
GAATAAAAAAATGGCACAAATAAACGAAAAGGTCTCATTTGTAATCATTA
AAAAAAAAAAAAAAAAA

LP06940.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6788-RA 1198 CG6788-RA 50..1198 1..1149 5745 100 Plus
nc_CG6788_pseudogene.a 756 nc_CG6788_pseudogene.a 1..756 333..1088 3780 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17777528..17778473 1..946 4715 99.9 Plus
chrX 22417052 chrX 17787987..17788628 305..946 3210 100 Plus
chrX 22417052 chrX 17778550..17778754 945..1149 1025 100 Plus
chrX 22417052 chrX 17788705..17788909 945..1149 1025 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:51:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17888178..17889123 1..946 4730 100 Plus
X 23542271 X 17898637..17899278 305..946 3210 100 Plus
X 23542271 X 17889200..17889405 945..1150 1030 100 Plus
X 23542271 X 17899355..17899560 945..1150 1030 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17896276..17897221 1..946 4730 100 Plus
X 23527363 X 17906735..17907376 305..946 3210 100 Plus
X 23527363 X 17907453..17907658 945..1150 1030 100 Plus
X 23527363 X 17897298..17897503 945..1150 1030 100 Plus
Blast to na_te.dros performed 2019-03-16 18:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 9438..9490 1082..1130 111 73.6 Plus

LP06940.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:53:34 Download gff for LP06940.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17777528..17778473 1..946 99 -> Plus
chrX 17778552..17778754 947..1149 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:37:47 Download gff for LP06940.complete
Subject Subject Range Query Range Percent Splice Strand
CG6788-RA 1..1077 12..1088 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:42:20 Download gff for LP06940.complete
Subject Subject Range Query Range Percent Splice Strand
CG6788-RA 1..1077 12..1088 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:56 Download gff for LP06940.complete
Subject Subject Range Query Range Percent Splice Strand
CG6788-RA 1..1077 12..1088 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:34:27 Download gff for LP06940.complete
Subject Subject Range Query Range Percent Splice Strand
CG6788-RA 1..1077 12..1088 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:46 Download gff for LP06940.complete
Subject Subject Range Query Range Percent Splice Strand
CG6788-RA 1..1077 12..1088 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:16:38 Download gff for LP06940.complete
Subject Subject Range Query Range Percent Splice Strand
CG6788-RA 2..1150 1..1149 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:42:19 Download gff for LP06940.complete
Subject Subject Range Query Range Percent Splice Strand
CG6788-RA 2..1150 1..1149 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:56 Download gff for LP06940.complete
Subject Subject Range Query Range Percent Splice Strand
CG6788-RA 2..1150 1..1149 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:34:27 Download gff for LP06940.complete
Subject Subject Range Query Range Percent Splice Strand
CG6788-RA 2..1150 1..1149 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:46 Download gff for LP06940.complete
Subject Subject Range Query Range Percent Splice Strand
CG6788-RA 2..1150 1..1149 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:53:34 Download gff for LP06940.complete
Subject Subject Range Query Range Percent Splice Strand
X 17889202..17889404 947..1149 100   Plus
X 17888178..17889123 1..946 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:53:34 Download gff for LP06940.complete
Subject Subject Range Query Range Percent Splice Strand
X 17889202..17889404 947..1149 100   Plus
X 17888178..17889123 1..946 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:53:34 Download gff for LP06940.complete
Subject Subject Range Query Range Percent Splice Strand
X 17889202..17889404 947..1149 100   Plus
X 17888178..17889123 1..946 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:56 Download gff for LP06940.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17782211..17783156 1..946 100 -> Plus
arm_X 17783235..17783437 947..1149 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:06:47 Download gff for LP06940.complete
Subject Subject Range Query Range Percent Splice Strand
X 17896276..17897221 1..946 100 -> Plus
X 17897300..17897502 947..1149 100   Plus

LP06940.hyp Sequence

Translation from 2 to 1087

> LP06940.hyp
TVRMFRIMKTAYLILILSLSISTSLANDPQRSFDQNADNPCSAHRIWVWR
PILDRFAKVNSSDELKNQVNAMSETIKDLQTRIGHKNELLLLQAGQIKDQ
SARLNVLIKNMKVLRSECLNAQAEIKSKDIQIQLSAAKIKQMSNELVTQC
SRQDTCPIDGKGGIYKLKIRELPAFEAPCSSNGWLTIQKRYDGAENFDRG
WKDYKDGFGRVRGEFFIGLEKVHLMTRQRRHELYIKLGKIDGTTSHAHYD
NFELGGEIESYELKSLGRYNGTAGDSLRPHERQKFTTNDKDNDAYRFNCA
ADEYGGWWYYDCAKSMLNGKFYKEGRSRNGKTNGILWGSWHNNDWTYSLT
FVEMMIRPRID*

LP06940.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6788-PA 358 CG6788-PA 1..358 4..361 1914 100 Plus
CG31832-PB 227 CG31832-PB 20..225 151..359 525 46.7 Plus
CG8642-PB 429 CG8642-PB 106..413 58..359 482 36.8 Plus
CG30280-PB 272 CG30280-PB 11..263 107..359 472 36.7 Plus
CG30281-PA 291 CG30281-PA 8..274 89..359 427 34.6 Plus

LP06940.pep Sequence

Translation from 11 to 1087

> LP06940.pep
MFRIMKTAYLILILSLSISTSLANDPQRSFDQNADNPCSAHRIWVWRPIL
DRFAKVNSSDELKNQVNAMSETIKDLQTRIGHKNELLLLQAGQIKDQSAR
LNVLIKNMKVLRSECLNAQAEIKSKDIQIQLSAAKIKQMSNELVTQCSRQ
DTCPIDGKGGIYKLKIRELPAFEAPCSSNGWLTIQKRYDGAENFDRGWKD
YKDGFGRVRGEFFIGLEKVHLMTRQRRHELYIKLGKIDGTTSHAHYDNFE
LGGEIESYELKSLGRYNGTAGDSLRPHERQKFTTNDKDNDAYRFNCAADE
YGGWWYYDCAKSMLNGKFYKEGRSRNGKTNGILWGSWHNNDWTYSLTFVE
MMIRPRID*

LP06940.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21743-PA 240 GF21743-PA 4..238 121..356 637 50.4 Plus
Dana\GF22929-PA 423 GF22929-PA 109..421 62..356 619 42.3 Plus
Dana\GF21645-PA 277 GF21645-PA 30..276 113..357 609 47 Plus
Dana\GF22918-PA 451 GF22918-PA 137..449 62..356 608 42.9 Plus
Dana\GF22781-PA 284 GF22781-PA 26..274 113..357 594 47.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24228-PA 227 GG24228-PA 20..226 148..357 510 46.5 Plus
Dere\GG10629-PA 417 GG10629-PA 178..401 135..356 462 40.4 Plus
Dere\GG22161-PA 288 GG22161-PA 27..279 104..356 448 35.5 Plus
Dere\GG23629-PA 277 GG23629-PA 6..272 105..356 429 33.1 Plus
Dere\GG22162-PA 291 GG22162-PA 20..274 97..356 427 36.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10950-PA 350 GH10950-PA 2..348 38..356 504 34.2 Plus
Dgri\GH13721-PA 331 GH13721-PA 42..328 56..358 495 35.7 Plus
Dgri\GH10782-PA 258 GH10782-PA 18..256 114..356 476 40.9 Plus
Dgri\GH21805-PA 336 GH21805-PA 30..331 60..356 469 35 Plus
Dgri\GH23023-PA 253 GH23023-PA 14..249 131..356 438 40.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6788-PA 358 CG6788-PA 1..358 1..358 1914 100 Plus
CG31832-PB 227 CG31832-PB 20..225 148..356 525 46.7 Plus
CG8642-PB 429 CG8642-PB 106..413 55..356 482 36.8 Plus
CG30280-PD 288 CG30280-PD 27..279 104..356 472 36.7 Plus
CG30281-PA 291 CG30281-PA 8..274 86..356 427 34.6 Plus
CG9500-PB 292 CG9500-PB 53..287 119..356 423 34.3 Plus
CG1791-PA 334 CG1791-PA 68..330 105..355 413 37.9 Plus
CG1791-PC 333 CG1791-PC 125..329 156..355 410 43.7 Plus
CG1791-PB 195 CG1791-PB 16..191 180..355 402 46.9 Plus
CG5550-PA 246 CG5550-PA 46..246 158..356 388 39.2 Plus
CG5550-PB 250 CG5550-PB 46..250 158..356 373 38.5 Plus
CG1889-PC 332 CG1889-PC 151..329 178..356 347 41.1 Plus
CG1889-PA 332 CG1889-PA 151..329 178..356 347 41.1 Plus
CG1889-PD 338 CG1889-PD 157..335 178..356 347 41.1 Plus
CG10359-PG 459 CG10359-PG 255..449 160..355 327 39.6 Plus
CG10359-PE 485 CG10359-PE 281..475 160..355 327 39.6 Plus
CG41520-PD 627 CG41520-PD 409..616 158..357 327 34.3 Plus
CG41520-PA 745 CG41520-PA 527..734 158..357 327 34.3 Plus
CG7668-PC 422 CG7668-PC 178..420 99..355 312 33.5 Plus
CG7668-PA 422 CG7668-PA 178..420 99..355 312 33.5 Plus
sca-PB 799 CG17579-PB 479..723 59..342 294 28.9 Plus
sca-PA 799 CG17579-PA 479..723 59..342 294 28.9 Plus
CG41520-PB 729 CG41520-PB 549..718 185..357 285 35.6 Plus
CG9593-PB 382 CG9593-PB 196..370 181..355 242 32.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21406-PA 397 GI21406-PA 131..393 94..357 509 38.6 Plus
Dmoj\GI20776-PA 378 GI20776-PA 103..374 61..356 487 34.4 Plus
Dmoj\GI21094-PA 389 GI21094-PA 116..384 88..355 475 38.5 Plus
Dmoj\GI18379-PA 330 GI18379-PA 17..326 47..355 473 33.5 Plus
Dmoj\GI10115-PA 380 GI10115-PA 26..378 45..356 457 34.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25703-PA 356 GL25703-PA 4..354 7..356 629 37.5 Plus
Dper\GL25701-PA 401 GL25701-PA 4..367 7..356 610 37 Plus
Dper\GL18754-PA 239 GL18754-PA 10..234 130..355 599 51.3 Plus
Dper\GL25691-PA 472 GL25691-PA 189..471 70..357 565 39.8 Plus
Dper\GL26064-PA 458 GL26064-PA 142..447 60..356 563 38.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25398-PA 368 GA25398-PA 4..364 7..356 617 36.9 Plus
Dpse\GA28713-PA 328 GA28713-PA 40..326 60..356 598 39.6 Plus
Dpse\GA25261-PA 262 GA25261-PA 9..251 119..356 551 44.4 Plus
Dpse\GA25394-PA 281 GA25394-PA 18..280 93..357 548 40.6 Plus
Dpse\GA25399-PA 201 GA25399-PA 1..199 160..356 539 51.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22864-PA 358 GM22864-PA 1..358 1..358 1676 90.2 Plus
Dsec\GM14577-PA 227 GM14577-PA 20..225 148..356 537 49.5 Plus
Dsec\GM20674-PA 418 GM20674-PA 126..402 61..356 477 34.9 Plus
Dsec\GM15881-PA 288 GM15881-PA 27..279 104..356 453 36.7 Plus
Dsec\GM15883-PA 292 GM15883-PA 8..275 86..356 429 35.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17373-PA 358 GD17373-PA 1..358 1..358 1683 90.2 Plus
Dsim\GD11644-PA 288 GD11644-PA 32..279 114..356 445 38.6 Plus
Dsim\GD11645-PA 292 GD11645-PA 8..275 86..356 438 35.5 Plus
Dsim\GD22585-PA 292 GD22585-PA 37..287 100..356 424 34.5 Plus
Dsim\GD24553-PA 306 GD24553-PA 44..302 102..355 397 37.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11201-PA 339 GJ11201-PA 41..335 61..357 505 35.9 Plus
Dvir\GJ20942-PA 376 GJ20942-PA 107..370 96..355 498 39.7 Plus
Dvir\GJ18368-PA 262 GJ18368-PA 14..260 111..356 480 40.9 Plus
Dvir\GJ20511-PA 390 GJ20511-PA 81..385 58..356 462 32.5 Plus
Dvir\GJ17114-PA 359 GJ17114-PA 86..355 87..355 458 37.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15074-PA 332 GK15074-PA 6..327 45..355 587 40.9 Plus
Dwil\GK15072-PA 238 GK15072-PA 23..233 146..355 549 52.1 Plus
Dwil\GK15546-PA 211 GK15546-PA 12..210 160..357 526 51 Plus
Dwil\GK24749-PA 282 GK24749-PA 5..281 100..357 468 36.4 Plus
Dwil\GK20369-PA 234 GK20369-PA 30..230 160..357 463 46.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17696-PA 363 GE17696-PA 1..361 1..356 1514 79.3 Plus
Dyak\GE24720-PA 227 GE24720-PA 20..226 148..357 520 46.9 Plus
Dyak\GE22879-PA 418 GE22879-PA 127..403 61..356 463 34.2 Plus
Dyak\GE12241-PA 288 GE12241-PA 27..279 104..356 448 36.3 Plus
Dyak\GE12242-PA 288 GE12242-PA 31..275 119..356 438 38.2 Plus