Clone LP07257 Report

Search the DGRC for LP07257

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:72
Well:57
Vector:pOT2
Associated Gene/TranscriptCG7992-RA
Protein status:LP07257.pep: gold
Preliminary Size:1548
Sequenced Size:1680

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7992 2002-01-01 Sim4 clustering to Release 2
CG7992 2002-05-18 Blastp of sequenced clone
CG7992 2003-01-01 Sim4 clustering to Release 3
CG7992 2008-04-29 Release 5.5 accounting
CG7992 2008-08-15 Release 5.9 accounting
CG7992 2008-12-18 5.12 accounting

Clone Sequence Records

LP07257.complete Sequence

1680 bp (1680 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119058

> LP07257.complete
TAGGCATCTCCATTCCAGCTGCTCGCTAAAATGCTCTAAGCTCCTTCGAT
AGACGAACCTTCCTCTCCCTGCTGCTGGACTAACTAACGCAAATCTATCG
CAAAAATGTCGAATGTGTGGGGCAAACTGGTGCTGAAGTTCTTTAAATAT
GCGCCCAGCTATGTGGTCTGCCTGTGCTTCCTGCCCTGCGGCATGATCTT
TGGCTATACGATCTGCGCCTTTGTTGCGGAGCGGAACCTCAACGCTGGAC
TCATTCACTATGGACCATTGATTCTGGGCGCCTGCTGGGCGTTGATCACT
GCCCTGGCCATGCTGACGGTCAAGTTCGTGAAGAAGTGCATCGTCTACTG
GCAGCCATGGCTGCTCCTGGCAGCCGGAGTCTTTAATCTCATAGGCAGCT
GCTTCTACTTTGCCGATGGATTTGACCACGTCGGAGCCTATATATCGTAC
TTGGCGCACAGCATGACCTTCGTGGCCGGCTATAGCTTCCTGCTCACGAT
CAGCTCCAAGGGCAGCAGGTCGCTGTTCCTCTCGGGCAGCTGCAGCTGCT
ACCTGCTGGGCGTGGCGTCCGCCGTCAGCCTGATCGTGGCCTCCTACAGC
CGGAATGTAAAGGAGCTGGCCGGACAGACGGTGACCACGGAGCAACTGAT
CGATGGCATCTATGTAAACTTCGCCGGCACCTACTTGAGTGTGGCGGCCG
CCGTGTTGGCCATTCTGGTGGGCCAGAAGGTGCTCCACTTTCTGGGCACC
GTCGACCTGGTGAACAGCATGGACAACGACCTGCGGATCGCCAACTCGAA
TGGCAGCATCTTCGAGCAGCGATCGGAGGTCATCAAGCGACTGCAGTTCT
TCTACGTGACCAAGAACCAGCAGTGGAACATAATGCTACTGCTCCTCTTC
ACGGAGGCCGTGCAGTTCGCCCTGTTCGTGTACTTTGTCTACTGGTTTGC
CCTTAATCCGGCCATCCGGCTGACAGAGTTCTCCGGCATCGACGGCATGT
TCTGGGTGATCTTTGCGGGCAGCCTGCTGGCCCTCATCTGCCAGTGGTTC
CTGTCGGTGAAGGTCACCTTTGTGGGCTCGCAGGTGGCCCTCATCTCCTT
CACTCTGCTGGCCATGATCCTCTGCAGCGTTACGGACTCCAGGTGGTCGC
TCTGGCTGCTCCTTGTGCTCTTTGGCCTGTCGTACTCGCAGCAGCAGATT
CTCCTGCTGGAGGTCACCCATCTGCGCTTCACCGAATGCATCATATGCAT
CTCGTATGTGCTCAAGTTGATCTGCACCAGCATCGTGTACTTCTACTTTG
TGGCGGATGCGAAGAACTCCTACTTCTATGCCACCGACTCGAGCACTCTG
ATGGCCCAGGGATTCGTCTTTCTCATCATCACCTCGCTGCTGGCACTCGT
GGTGGGCATGAAGGTGCCCCGGACGCATCGCGCCCAGCTGCTGGAGATCC
AGTACGAGGTGTACGGCATCATCTTTATGAAGCACCAGATCGAGCAGCTC
AACGTCCGTTGGCTGAACGACGGCACCATTCCCACCATCAACCAGTGAGC
CCGAATTTGAGCTTAGGTCCCCGAGCTGTACACACACACTTTCTTATCTT
ATCACAAATACTCAGTATTTAATGAATCGAAAATAAAAAGACTTCTCAGT
CTTTATCCACATAAAAAAAAAAAAAAAAAA

LP07257.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7992-RA 1860 CG7992-RA 89..1751 1..1663 8315 100 Plus
CG7992.a 2073 CG7992.a 302..1964 1..1663 8315 100 Plus
CG7889-RA 1559 CG7889-RA 1492..1559 1663..1596 340 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19134076..19135314 1662..424 6180 99.9 Minus
chrX 22417052 chrX 19135655..19135913 424..166 1295 100 Minus
chrX 22417052 chrX 19135972..19136135 166..3 805 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:51:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19245157..19246396 1663..424 6200 100 Minus
X 23542271 X 19246737..19246995 424..166 1295 100 Minus
X 23542271 X 19247054..19247219 166..1 830 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19253255..19254494 1663..424 6200 100 Minus
X 23527363 X 19254835..19255093 424..166 1295 100 Minus
X 23527363 X 19255152..19255317 166..1 830 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:23:02 has no hits.

LP07257.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:23:51 Download gff for LP07257.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19134076..19135313 425..1662 99 <- Minus
chrX 19135655..19135912 167..424 100 <- Minus
chrX 19135972..19136137 1..166 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:38:03 Download gff for LP07257.complete
Subject Subject Range Query Range Percent Splice Strand
CG7992-RA 1..1443 106..1548 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:42:10 Download gff for LP07257.complete
Subject Subject Range Query Range Percent Splice Strand
CG7992-RA 1..1443 106..1548 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:49:07 Download gff for LP07257.complete
Subject Subject Range Query Range Percent Splice Strand
CG7992-RA 1..1443 106..1548 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:34:18 Download gff for LP07257.complete
Subject Subject Range Query Range Percent Splice Strand
CG7992-RA 1..1443 106..1548 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:16:11 Download gff for LP07257.complete
Subject Subject Range Query Range Percent Splice Strand
CG7992-RA 1..1443 106..1548 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:16:25 Download gff for LP07257.complete
Subject Subject Range Query Range Percent Splice Strand
CG7992-RA 1..1662 1..1662 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:42:10 Download gff for LP07257.complete
Subject Subject Range Query Range Percent Splice Strand
CG7992-RA 1..1662 1..1662 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:49:07 Download gff for LP07257.complete
Subject Subject Range Query Range Percent Splice Strand
CG7992-RA 32..1693 1..1662 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:34:18 Download gff for LP07257.complete
Subject Subject Range Query Range Percent Splice Strand
CG7992-RA 1..1662 1..1662 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:16:11 Download gff for LP07257.complete
Subject Subject Range Query Range Percent Splice Strand
CG7992-RA 32..1693 1..1662 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:23:51 Download gff for LP07257.complete
Subject Subject Range Query Range Percent Splice Strand
X 19245158..19246395 425..1662 100 <- Minus
X 19246737..19246994 167..424 100 <- Minus
X 19247054..19247219 1..166 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:23:51 Download gff for LP07257.complete
Subject Subject Range Query Range Percent Splice Strand
X 19245158..19246395 425..1662 100 <- Minus
X 19246737..19246994 167..424 100 <- Minus
X 19247054..19247219 1..166 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:23:51 Download gff for LP07257.complete
Subject Subject Range Query Range Percent Splice Strand
X 19245158..19246395 425..1662 100 <- Minus
X 19246737..19246994 167..424 100 <- Minus
X 19247054..19247219 1..166 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:49:07 Download gff for LP07257.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19139191..19140428 425..1662 100 <- Minus
arm_X 19140770..19141027 167..424 100 <- Minus
arm_X 19141087..19141252 1..166 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:06:38 Download gff for LP07257.complete
Subject Subject Range Query Range Percent Splice Strand
X 19253256..19254493 425..1662 100 <- Minus
X 19254835..19255092 167..424 100 <- Minus
X 19255152..19255317 1..166 100   Minus

LP07257.hyp Sequence

Translation from 105 to 1547

> LP07257.hyp
MSNVWGKLVLKFFKYAPSYVVCLCFLPCGMIFGYTICAFVAERNLNAGLI
HYGPLILGACWALITALAMLTVKFVKKCIVYWQPWLLLAAGVFNLIGSCF
YFADGFDHVGAYISYLAHSMTFVAGYSFLLTISSKGSRSLFLSGSCSCYL
LGVASAVSLIVASYSRNVKELAGQTVTTEQLIDGIYVNFAGTYLSVAAAV
LAILVGQKVLHFLGTVDLVNSMDNDLRIANSNGSIFEQRSEVIKRLQFFY
VTKNQQWNIMLLLLFTEAVQFALFVYFVYWFALNPAIRLTEFSGIDGMFW
VIFAGSLLALICQWFLSVKVTFVGSQVALISFTLLAMILCSVTDSRWSLW
LLLVLFGLSYSQQQILLLEVTHLRFTECIICISYVLKLICTSIVYFYFVA
DAKNSYFYATDSSTLMAQGFVFLIITSLLALVVGMKVPRTHRAQLLEIQY
EVYGIIFMKHQIEQLNVRWLNDGTIPTINQ*

LP07257.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7992-PA 480 CG7992-PA 1..480 1..480 2472 100 Plus

LP07257.pep Sequence

Translation from 105 to 1547

> LP07257.pep
MSNVWGKLVLKFFKYAPSYVVCLCFLPCGMIFGYTICAFVAERNLNAGLI
HYGPLILGACWALITALAMLTVKFVKKCIVYWQPWLLLAAGVFNLIGSCF
YFADGFDHVGAYISYLAHSMTFVAGYSFLLTISSKGSRSLFLSGSCSCYL
LGVASAVSLIVASYSRNVKELAGQTVTTEQLIDGIYVNFAGTYLSVAAAV
LAILVGQKVLHFLGTVDLVNSMDNDLRIANSNGSIFEQRSEVIKRLQFFY
VTKNQQWNIMLLLLFTEAVQFALFVYFVYWFALNPAIRLTEFSGIDGMFW
VIFAGSLLALICQWFLSVKVTFVGSQVALISFTLLAMILCSVTDSRWSLW
LLLVLFGLSYSQQQILLLEVTHLRFTECIICISYVLKLICTSIVYFYFVA
DAKNSYFYATDSSTLMAQGFVFLIITSLLALVVGMKVPRTHRAQLLEIQY
EVYGIIFMKHQIEQLNVRWLNDGTIPTINQ*

LP07257.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15954-PA 480 GF15954-PA 1..480 1..480 2186 84.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18068-PA 480 GG18068-PA 1..480 1..480 2358 95.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24229-PA 480 GH24229-PA 1..480 1..480 1835 71.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7992-PA 480 CG7992-PA 1..480 1..480 2472 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15736-PA 480 GI15736-PA 1..480 1..480 1847 71 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12993-PA 480 GL12993-PA 1..480 1..480 2161 83.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20748-PA 480 GA20748-PA 1..480 1..480 2168 83.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22755-PA 458 GM22755-PA 1..407 1..407 2049 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15589-PA 480 GD15589-PA 1..480 1..480 2450 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15263-PA 480 GJ15263-PA 1..480 1..480 1844 73.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16257-PA 481 GK16257-PA 1..481 1..480 1939 77.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17403-PA 480 GE17403-PA 1..480 1..480 2347 94.8 Plus