Clone LP07378 Report

Search the DGRC for LP07378

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:73
Well:78
Vector:pOT2
Associated Gene/TranscriptDpck-RA
Protein status:LP07378.pep: gold
Sequenced Size:900

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1939 2002-01-01 Sim4 clustering to Release 2

Clone Sequence Records

LP07378.complete Sequence

900 bp assembled on 2011-09-15

GenBank Submission: BT128902.1

> LP07378.complete
ACGAACAAAACGATAAAAAACATTCCTACCATCGAATTATAGTATTTTAA
CTGCCGTTGAATAATGTTTATTGTGGCTGTAACTGGCGGTATCGCCACGG
GAAAAAGTACCATCAGCAAAGTGTTCGAACGCCAGGGTATTCCAGTCATC
GACGCCGACAAAATCGCCAGGGAGATTGTGGAACCAGGTCAGCCGTGCTG
GCGGCAGATTCGGGAAGTCTTCGGAGATGAGGTCCTCCTGCCCAGCAAGG
AGATCAACCGCGCTGTTCTGGGTAAGATGATCTTCGAGGACAAGGAGCTG
CGCGGAAAGCTGAACAAGATCACCCATCCGACCATCCATCGCAAGATCTT
TTGGCAAGTGTGCAAGCTGCTGGTCACGGGGCACGCGTGGATCGTCCTCG
ACCTGCCACTGCTCTTTGAGACCGGCGTGCTGATGGACTTTATACACAAG
ATCGTCTGTGTAACCTGCGACTCGGACAAGCAGCTGGAGCGATTAATAGC
CCGCAATGAGCTCTCGGAATCGGAAGCCCGGCATCGCGTCGATTCACAAA
TGCCGCTGGACAAGAAGTGCGAGAAGTCTCACTTCGTCATTGACAATAAC
GGGAGCGTGGAGGAGGCGGAGAGCTCGGCCATGAGCATTTACAACCTGAT
GCGCGACTCCAAGCAGCACTGGCTGAACCGCATCAGCTTCCTGGGGCTGT
TCCTAATCGTGGGCTTCACAATATATATGCTGCTGAAGGTGTTCAACCGG
CTGCCCGAGTCCTGGCAGATGTAGTCCGTGTCTGTGCGTGCCATACGAGG
TCACTTTATGTGTTAATGCAAATGATACCAAACCAATTATACAATTTAAA
AGCTTGTTAGTGAAATATATAGCCGAAACGTGAAAAAAAAAAAAAAAAAA

LP07378.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2908863..2909278 467..882 2065 99.8 Plus
chr3R 27901430 chr3R 2908501..2908792 176..467 1460 100 Plus
chr3R 27901430 chr3R 2908241..2908415 1..175 875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7082836..7083252 467..883 2070 99.8 Plus
3R 32079331 3R 7082474..7082765 176..467 1460 100 Plus
3R 32079331 3R 7082214..7082388 1..175 875 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6823667..6824083 467..883 2070 99.7 Plus
3R 31820162 3R 6823305..6823596 176..467 1460 100 Plus
3R 31820162 3R 6823045..6823219 1..175 875 100 Plus
Blast to na_te.dros performed on 2019-03-15 11:01:32 has no hits.

LP07378.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:02:30 Download gff for LP07378.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2908241..2908415 1..175 100 -> Plus
chr3R 2908501..2908792 176..467 100 -> Plus
chr3R 2908864..2909278 468..882 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-09-15 11:17:03 Download gff for LP07378.complete
Subject Subject Range Query Range Percent Splice Strand
Dpck-RA 1..711 64..774 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:33:44 Download gff for LP07378.complete
Subject Subject Range Query Range Percent Splice Strand
Dpck-RA 1..711 64..774 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:19:54 Download gff for LP07378.complete
Subject Subject Range Query Range Percent Splice Strand
Dpck-RA 1..711 64..774 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-15 11:17:03 Download gff for LP07378.complete
Subject Subject Range Query Range Percent Splice Strand
Dpck-RA 26..907 1..882 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:33:44 Download gff for LP07378.complete
Subject Subject Range Query Range Percent Splice Strand
Dpck-RA 33..914 1..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:54 Download gff for LP07378.complete
Subject Subject Range Query Range Percent Splice Strand
Dpck-RA 33..914 1..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:02:30 Download gff for LP07378.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7082214..7082388 1..175 100 -> Plus
3R 7082474..7082765 176..467 100 -> Plus
3R 7082837..7083251 468..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:02:30 Download gff for LP07378.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7082214..7082388 1..175 100 -> Plus
3R 7082474..7082765 176..467 100 -> Plus
3R 7082837..7083251 468..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:02:30 Download gff for LP07378.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7082214..7082388 1..175 100 -> Plus
3R 7082474..7082765 176..467 100 -> Plus
3R 7082837..7083251 468..882 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:33:44 Download gff for LP07378.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2907936..2908110 1..175 100 -> Plus
arm_3R 2908196..2908487 176..467 100 -> Plus
arm_3R 2908559..2908973 468..882 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:48:32 Download gff for LP07378.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6823305..6823596 176..467 100 -> Plus
3R 6823668..6824082 468..882 99   Plus
3R 6823045..6823219 1..175 100 -> Plus

LP07378.hyp Sequence

Translation from 63 to 773

> LP07378.hyp
MFIVAVTGGIATGKSTISKVFERQGIPVIDADKIAREIVEPGQPCWRQIR
EVFGDEVLLPSKEINRAVLGKMIFEDKELRGKLNKITHPTIHRKIFWQVC
KLLVTGHAWIVLDLPLLFETGVLMDFIHKIVCVTCDSDKQLERLIARNEL
SESEARHRVDSQMPLDKKCEKSHFVIDNNGSVEEAESSAMSIYNLMRDSK
QHWLNRISFLGLFLIVGFTIYMLLKVFNRLPESWQM*

LP07378.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpck-PA 236 CG1939-PA 1..236 1..236 1226 100 Plus
Ppat-Dpck-PA 518 CG10575-PA 312..507 2..196 243 29.9 Plus

LP07378.pep Sequence

Translation from 63 to 773

> LP07378.pep
MFIVAVTGGIATGKSTISKVFERQGIPVIDADKIAREIVEPGQPCWRQIR
EVFGDEVLLPSKEINRAVLGKMIFEDKELRGKLNKITHPTIHRKIFWQVC
KLLVTGHAWIVLDLPLLFETGVLMDFIHKIVCVTCDSDKQLERLIARNEL
SESEARHRVDSQMPLDKKCEKSHFVIDNNGSVEEAESSAMSIYNLMRDSK
QHWLNRISFLGLFLIVGFTIYMLLKVFNRLPESWQM*

LP07378.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17648-PA 236 GF17648-PA 1..236 1..236 1172 90.7 Plus
Dana\GF10448-PA 524 GF10448-PA 318..492 2..175 244 33 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13797-PA 236 GG13797-PA 1..236 1..236 1218 96.2 Plus
Dere\GG14115-PA 520 GG14115-PA 315..509 3..196 233 29.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19000-PA 236 GH19000-PA 1..234 1..234 1016 78.2 Plus
Dgri\GH15947-PA 518 GH15947-PA 309..471 2..163 245 33.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpck-PA 236 CG1939-PA 1..236 1..236 1226 100 Plus
Ppat-Dpck-PA 518 CG10575-PA 312..507 2..196 243 29.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24502-PA 236 GI24502-PA 1..236 1..236 985 75 Plus
Dmoj\GI16599-PA 514 GI16599-PA 307..481 2..175 234 31.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11944-PA 233 GL11944-PA 1..232 1..232 1025 79.3 Plus
Dper\GL16316-PA 517 GL16316-PA 311..498 3..189 240 31.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15141-PA 233 GA15141-PA 1..232 1..232 1018 78.9 Plus
Dpse\GA10406-PA 517 GA10406-PA 311..498 3..189 249 31.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10930-PA 236 GM10930-PA 1..236 1..236 1246 99.6 Plus
Dsec\GM13900-PA 518 GM13900-PA 312..507 2..196 234 29.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19908-PA 236 GD19908-PA 1..236 1..236 1252 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24567-PA 236 GJ24567-PA 1..236 1..236 986 74.6 Plus
Dvir\GJ12852-PA 515 GJ12852-PA 308..512 2..202 252 29.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14519-PA 238 GK14519-PA 1..238 1..236 1005 76.1 Plus
Dwil\GK16881-PA 524 GK16881-PA 314..490 2..175 232 33.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24899-PA 236 GE24899-PA 1..236 1..236 1224 96.6 Plus
Dyak\GE20540-PA 518 GE20540-PA 313..507 3..196 237 29.1 Plus