Clone LP07668 Report

Search the DGRC for LP07668

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:76
Well:68
Vector:pOT2
Associated Gene/TranscriptCG10479-RA
Protein status:LP07668.pep: gold
Preliminary Size:1658
Sequenced Size:1665

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10479 2001-01-01 Release 2 assignment
CG10479 2001-07-04 Blastp of sequenced clone
CG10479 2003-01-01 Sim4 clustering to Release 3
CG10479 2008-04-29 Release 5.5 accounting
CG10479 2008-08-15 Release 5.9 accounting
CG10479 2008-12-18 5.12 accounting

Clone Sequence Records

LP07668.complete Sequence

1665 bp (1665 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052053

> LP07668.complete
ATCGCTCGTATCGCTCCCGGGACTCAAAATCCGAGTACGGATTCGAATTC
GAAACGAACCCATAACCGAAACTCAACACTCGCCGGACTTCGACTGCAAT
TCAAATACCATTTACGCGCTAAGTTATTGAACACTCGTGAAGGGCGCATA
AAGTTCTTGAAATTACGACTTTAGCATATTGTGCTTGTGTTTAAAGAGCA
AAGTGTAAACAAATCCGAAGAGTTATCTTCACATCTTAAGAAAATGGGTC
GCCTGTTCCAATACAATCGCTTTGGCGCCACGGATGGCATCAACAAAAAC
ACCAGCAAAAAGGATACTCAGCAAAAGAACAAAATGCTACGCAATGCCAT
CAAATGTCCTGGCTACTCGGACATCTATGGTCAGTACAATAAGGACTCGT
CCTTCGAGAAGTGCGATGAATGGAGCAACAAGCTGCAATTCCCAGCCGCC
GGAGAAATGGATAAACAGGAACCGATCCAGAGTCGCACGCACAAGGTCTA
CGACAGCATGAAGAGTTTTCTGCAGCGCAAACTCTTCGCGCAACCCTCGC
ATAAAGAGCAGATCTTAAACGAAGAACCCACAAGCGACTATGATGAGGAC
CTTCTCGACTCCTCGTACCACGCCGACGCGGAAGAAGAGGAGGAGGAACG
CGATGCGGACTGCAGCTGCAGCTCCACCGGCAGTAGCAGCACCAGCAGCA
GCAGCCCAACCACGCCGAAACGATCACCCCAAAAGTCCCTGCTGTCCCTC
AACTGCTGGCAGAGCAGTCAGCCAAGCAGTGACTCCAATCCCGAAGAGGA
GCAGGATGAGGAGGCAGAAGAGGACTCCGACGCTGGAATCTCCGATTGCT
GTCAACTCTTAGCTGAGAATTCCCCCAACACCATGAGCAAACGCCGTCGA
GCTGCACCTCTATTCACCAGATACATCAGCGCCAACCAGAACTCCGACGA
TGATGAGGACGAGGAGCCGGAGCTCCTGGCGTGTCCCTGGTATCAGCCCA
GGATCACGGCCAAGGCAGCTTTGGAGCACCTGCAGCAGGCCACACCTGGA
AGCTTTCTTCTGCGACGCAGTACGCCGCGACATTTCGAACTGGTCCTGCG
ACTCGAGAGGAACAACAAGGTCAAGACCTATCCCGTGCAGTCCACCCGGA
ACCAGATGTACCGCCTGAAGGGAGCCAAGAAACAGTTCACCAGCCTGAAA
GCGCTGATCACCCACCACTCCGTGATGGCCGAACAACTGCCATTGGTATT
GGATATGCCCAGGGAGCGTCATGTGGTGAAGCCCTCATCAGTGCGCTATG
CAGATGACTTCGAGCCGCTGGAGTCCCTGCAGCTACTCGGCATCCTGAGG
AGTCTGCAGGCGAAAAGCATTGAGATATAGAAAATAATTATTAATCGGGG
TTTCATGGGGCGGGTCAAATAATATCGAACTGCAAAGGGAACGATAGGTG
AAAGTAATTAGGAATTTGTTTTGTTCTATGCATAAGTACATGTGATATAG
TTTACGGAATTGCGGGCTGAGCAACCCTCGAATTTAGTTAGGCCTACCAA
CTAATTGAAATATTTTGTATCCGACATAGGGCTAAGTTTTCTATTGTGAA
AGTGTAATATGAATAAAAATCAAACAATGGCATTCAGCAAAAACGCAAAA
AAAAAAAAAAAAAAA

LP07668.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10479-RA 1986 CG10479-RA 259..1906 1..1648 8240 100 Plus
CG10479.a 1989 CG10479.a 259..1909 1..1648 8185 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5960187..5961237 1646..596 5180 99.5 Minus
chr3L 24539361 chr3L 5968289..5968624 336..1 1680 100 Minus
chr3L 24539361 chr3L 5961457..5961719 598..336 1300 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:52:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5967543..5968595 1648..596 5265 100 Minus
3L 28110227 3L 5975645..5975980 336..1 1680 100 Minus
3L 28110227 3L 5968813..5969075 598..336 1315 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5960643..5961695 1648..596 5265 100 Minus
3L 28103327 3L 5968745..5969080 336..1 1680 100 Minus
3L 28103327 3L 5961913..5962175 598..336 1315 100 Minus
Blast to na_te.dros performed on 2019-03-16 06:17:40 has no hits.

LP07668.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:18:45 Download gff for LP07668.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5960187..5961235 598..1646 95 <- Minus
chr3L 5961458..5961718 337..597 99 <- Minus
chr3L 5968289..5968624 1..336 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:38:33 Download gff for LP07668.complete
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 1..1137 244..1380 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:14:01 Download gff for LP07668.complete
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 1..1137 244..1380 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:18:13 Download gff for LP07668.complete
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 1..1137 244..1380 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:45:18 Download gff for LP07668.complete
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 1..1137 244..1380 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:19:55 Download gff for LP07668.complete
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 1..1137 244..1380 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:06:57 Download gff for LP07668.complete
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 26..1671 1..1646 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:14:01 Download gff for LP07668.complete
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 26..1671 1..1646 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:13 Download gff for LP07668.complete
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 28..1673 1..1646 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:45:18 Download gff for LP07668.complete
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 26..1671 1..1646 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:19:55 Download gff for LP07668.complete
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 28..1673 1..1646 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:18:45 Download gff for LP07668.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5967545..5968593 598..1646 100 <- Minus
3L 5968814..5969074 337..597 100 <- Minus
3L 5975645..5975980 1..336 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:18:45 Download gff for LP07668.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5967545..5968593 598..1646 100 <- Minus
3L 5968814..5969074 337..597 100 <- Minus
3L 5975645..5975980 1..336 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:18:45 Download gff for LP07668.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5967545..5968593 598..1646 100 <- Minus
3L 5968814..5969074 337..597 100 <- Minus
3L 5975645..5975980 1..336 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:13 Download gff for LP07668.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5960645..5961693 598..1646 100 <- Minus
arm_3L 5961914..5962174 337..597 100 <- Minus
arm_3L 5968745..5969080 1..336 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:23:06 Download gff for LP07668.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5960645..5961693 598..1646 100 <- Minus
3L 5961914..5962174 337..597 100 <- Minus
3L 5968745..5969080 1..336 100   Minus

LP07668.pep Sequence

Translation from 243 to 1379

> LP07668.pep
MGRLFQYNRFGATDGINKNTSKKDTQQKNKMLRNAIKCPGYSDIYGQYNK
DSSFEKCDEWSNKLQFPAAGEMDKQEPIQSRTHKVYDSMKSFLQRKLFAQ
PSHKEQILNEEPTSDYDEDLLDSSYHADAEEEEEERDADCSCSSTGSSST
SSSSPTTPKRSPQKSLLSLNCWQSSQPSSDSNPEEEQDEEAEEDSDAGIS
DCCQLLAENSPNTMSKRRRAAPLFTRYISANQNSDDDEDEEPELLACPWY
QPRITAKAALEHLQQATPGSFLLRRSTPRHFELVLRLERNNKVKTYPVQS
TRNQMYRLKGAKKQFTSLKALITHHSVMAEQLPLVLDMPRERHVVKPSSV
RYADDFEPLESLQLLGILRSLQAKSIEI*

LP07668.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23754-PA 370 GF23754-PA 1..370 1..378 1300 78.7 Plus
Dana\GF10662-PA 460 GF10662-PA 312..455 233..377 260 43.3 Plus
Dana\GF23755-PA 424 GF23755-PA 282..384 240..340 193 44.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14098-PA 375 GG14098-PA 1..375 1..378 1948 96.8 Plus
Dere\GG15304-PA 478 GG15304-PA 335..473 238..377 254 44.8 Plus
Dere\GG14099-PA 426 GG14099-PA 282..384 240..340 196 44.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16449-PA 383 GH16449-PA 1..382 1..377 1205 66.8 Plus
Dgri\GH15019-PA 503 GH15019-PA 360..500 236..377 258 44.2 Plus
Dgri\GH23743-PA 274 GH23743-PA 131..271 236..377 255 44.2 Plus
Dgri\GH16450-PA 453 GH16450-PA 306..412 240..344 199 43.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10479-PA 378 CG10479-PA 1..378 1..378 1971 100 Plus
CG10479-PB 379 CG10479-PB 1..379 1..378 1959 99.7 Plus
PVRAP-PA 474 CG32406-PA 331..469 238..377 241 44.1 Plus
CG33993-PB 258 CG33993-PB 114..216 240..340 189 44.2 Plus
CG33993-PA 421 CG33993-PA 277..379 240..340 189 44.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16706-PA 375 GI16706-PA 1..374 1..377 1185 67.4 Plus
Dmoj\GI16674-PA 481 GI16674-PA 339..478 237..377 261 45.2 Plus
Dmoj\GI16708-PA 425 GI16708-PA 280..386 240..344 200 43.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15532-PA 349 GL15532-PA 1..349 31..378 1215 77.6 Plus
Dper\GL15534-PA 487 GL15534-PA 338..481 233..377 258 44 Plus
Dper\GL16312-PA 426 GL16312-PA 282..388 240..344 205 44.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10339-PA 380 GA10339-PA 1..380 1..378 1340 77.4 Plus
Dpse\GA16878-PA 487 GA16878-PA 338..481 233..377 260 44 Plus
Dpse\GA23858-PA 424 GA23858-PA 280..386 240..344 205 44.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13881-PA 378 GM13881-PA 1..378 1..378 1978 97.1 Plus
Dsec\GM14737-PA 474 GM14737-PA 326..469 230..377 251 43.8 Plus
Dsec\GM13883-PA 418 GM13883-PA 274..376 240..340 196 44.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13163-PA 378 GD13163-PA 1..378 1..378 1997 98.1 Plus
Dsim\GD13917-PA 435 GD13917-PA 287..430 230..377 249 43.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12447-PA 394 GJ12447-PA 1..393 1..377 1004 60.3 Plus
Dvir\GJ12926-PA 494 GJ12926-PA 346..491 231..377 257 42.4 Plus
Dvir\GJ12450-PA 419 GJ12450-PA 274..380 240..344 203 43.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17289-PA 388 GK17289-PA 1..388 1..378 1057 61.8 Plus
Dwil\GK16887-PA 460 GK16887-PA 309..452 233..377 264 44 Plus
Dwil\GK17294-PA 457 GK17294-PA 272..381 240..347 204 43.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20519-PA 378 GE20519-PA 1..378 1..378 1972 96.8 Plus
Dyak\GE21524-PA 481 GE21524-PA 338..476 238..377 254 44.8 Plus
Dyak\GE20521-PA 441 GE20521-PA 297..399 240..340 194 44.2 Plus

LP07668.hyp Sequence

Translation from 243 to 1379

> LP07668.hyp
MGRLFQYNRFGATDGINKNTSKKDTQQKNKMLRNAIKCPGYSDIYGQYNK
DSSFEKCDEWSNKLQFPAAGEMDKQEPIQSRTHKVYDSMKSFLQRKLFAQ
PSHKEQILNEEPTSDYDEDLLDSSYHADAEEEEEERDADCSCSSTGSSST
SSSSPTTPKRSPQKSLLSLNCWQSSQPSSDSNPEEEQDEEAEEDSDAGIS
DCCQLLAENSPNTMSKRRRAAPLFTRYISANQNSDDDEDEEPELLACPWY
QPRITAKAALEHLQQATPGSFLLRRSTPRHFELVLRLERNNKVKTYPVQS
TRNQMYRLKGAKKQFTSLKALITHHSVMAEQLPLVLDMPRERHVVKPSSV
RYADDFEPLESLQLLGILRSLQAKSIEI*

LP07668.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10479-PA 378 CG10479-PA 1..378 1..378 1971 100 Plus
CG10479-PB 379 CG10479-PB 1..379 1..378 1959 99.7 Plus
PVRAP-PA 474 CG32406-PA 331..469 238..377 241 44.1 Plus
CG33993-PB 258 CG33993-PB 114..216 240..340 189 44.2 Plus
CG33993-PA 421 CG33993-PA 277..379 240..340 189 44.2 Plus