Clone LP07727 Report

Search the DGRC for LP07727

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:77
Well:27
Vector:pOT2
Associated Gene/TranscriptCG2063-RA
Protein status:LP07727.pep: gold
Preliminary Size:1266
Sequenced Size:1173

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2063 2001-01-01 Release 2 assignment
CG2063 2003-01-01 Sim4 clustering to Release 3
CG2063 2003-04-23 Blastp of sequenced clone
CG2063 2008-04-29 Release 5.5 accounting
CG2063 2008-08-15 Release 5.9 accounting
CG2063 2008-12-18 5.12 accounting

Clone Sequence Records

LP07727.complete Sequence

1173 bp (1173 high quality bases) assembled on 2003-04-23

GenBank Submission: AY069745

> LP07727.complete
AAACAATTTCTTAAAATAAGTTGTAGTCATCTAAGTTTTAAATACATCCA
ATTAAATGGCTGCCCTGGCCAGCTTGACTGCCCAGTACACGGATTCCGAG
AACGAGGGCGATGCTAGTCCGGATTCACAAAACTCCACGGCGTCCCTGGT
AATCATACCGCCCAAGCGACCCACGCCGACGCCCACCAAACAGGACGAAG
AAAGCAAGCGATCTAAGGAGAAGAAAAAGAAGCGGGCCAAGAAGGTGCGT
CGGTTGGTGAGCTACCAGGATGACACCCTGATTTCTGACGAGGACGAGGA
CCGCGCCGCAGCGTCCTCTAGTGAAGAGGAGTCCAGCAGTGGCGACGAGA
GCAATAGTTCCAATTCCCAGAGCGAAGACAGTCCCAAAGCCAAGGATAAA
AGCAATGCTGGTAGTGGTTCCAAGGACGGGGACACGCCCATGGAGGTGGA
CGAGGAGCCGGCATGTTTCCCGGTCGAAGAACGCACGGCTGAGAGCTACG
AAAAGGATGCCAAGTACGCCAAGTACAAGTTCCAGCTGCCACCCGAGCCA
AAGGGGAAGCCGTCCGCCGAATTAGTGGCCAAAATCACTAAAATGTACAC
AAAGATGAACCAGACCAATATGGACATGAATCGCGTAATACAGGATCGCA
AGGAATTTCGCAATCCCAGCATATATGACAAACTAATAAGCTTTTGCGAC
ATCAACGAGTTCGGTACCAACTATCCGCCCGAGATCTATGATCCTTTGCA
GTGGGGCGAGGAGTCCTATTACGAGTCCTTGGCGGCGGTCCAGAAAACGG
AGATGGTGAAGCGGCAGAAAGATCGCAAGGACATGGACAAGGTGGAGCAG
GCCACTGCGTTGGCCCGGAAAGTCGAGGAGGAGGCCAAAAAGCGCAAATC
CAAGTGGGATCAACCGGCACCTTCGTCAACCGTTGTTAAGACCACTCTTC
CGGCTCTAACCACCACGGTTACGGGCACCAAGGGCACTGTCATTTCCGCC
TTTGGATCGCTGCCGAAGAAGCCAGCCGTTTAGATTTTAATTTTTAAATA
AACATTTAGTTTTAAACATTCTCATCCCAAGGCTTTCAATAGAAGCCTTT
TTTGGGTTTGTTTTTCCTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA

LP07727.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG2063-RA 1343 CG2063-RA 124..1247 1..1124 5620 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5173132..5173882 894..144 3740 99.9 Minus
chr2R 21145070 chr2R 5172839..5173068 1123..894 1150 100 Minus
chr2R 21145070 chr2R 5173942..5174091 150..1 750 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:52:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9285603..9286353 894..144 3740 99.9 Minus
2R 25286936 2R 9285309..9285539 1124..894 1155 100 Minus
2R 25286936 2R 9286413..9286562 150..1 750 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9286802..9287552 894..144 3740 99.8 Minus
2R 25260384 2R 9286508..9286738 1124..894 1155 100 Minus
2R 25260384 2R 9287612..9287761 150..1 750 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:34:20 has no hits.

LP07727.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:35:32 Download gff for LP07727.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5172839..5173067 895..1123 100 <- Minus
chr2R 5173132..5173877 149..894 100 <- Minus
chr2R 5173944..5174091 1..148 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:38:34 Download gff for LP07727.complete
Subject Subject Range Query Range Percent Splice Strand
CG2063-RA 1..978 56..1033 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:38:27 Download gff for LP07727.complete
Subject Subject Range Query Range Percent Splice Strand
CG2063-RA 1..978 56..1033 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:25:14 Download gff for LP07727.complete
Subject Subject Range Query Range Percent Splice Strand
CG2063-RA 1..978 56..1033 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:15:17 Download gff for LP07727.complete
Subject Subject Range Query Range Percent Splice Strand
CG2063-RA 1..978 56..1033 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:28:16 Download gff for LP07727.complete
Subject Subject Range Query Range Percent Splice Strand
CG2063-RA 1..978 56..1033 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:42:51 Download gff for LP07727.complete
Subject Subject Range Query Range Percent Splice Strand
CG2063-RA 68..1190 1..1123 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:38:27 Download gff for LP07727.complete
Subject Subject Range Query Range Percent Splice Strand
CG2063-RA 68..1190 1..1123 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:25:14 Download gff for LP07727.complete
Subject Subject Range Query Range Percent Splice Strand
CG2063-RA 73..1195 1..1123 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:15:17 Download gff for LP07727.complete
Subject Subject Range Query Range Percent Splice Strand
CG2063-RA 68..1190 1..1123 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:28:16 Download gff for LP07727.complete
Subject Subject Range Query Range Percent Splice Strand
CG2063-RA 73..1195 1..1123 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:35:32 Download gff for LP07727.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9286415..9286562 1..148 100   Minus
2R 9285310..9285538 895..1123 100 <- Minus
2R 9285603..9286348 149..894 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:35:32 Download gff for LP07727.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9286415..9286562 1..148 100   Minus
2R 9285310..9285538 895..1123 100 <- Minus
2R 9285603..9286348 149..894 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:35:32 Download gff for LP07727.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9286415..9286562 1..148 100   Minus
2R 9285310..9285538 895..1123 100 <- Minus
2R 9285603..9286348 149..894 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:25:14 Download gff for LP07727.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5173920..5174067 1..148 100   Minus
arm_2R 5172815..5173043 895..1123 100 <- Minus
arm_2R 5173108..5173853 149..894 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:51:12 Download gff for LP07727.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9286509..9286737 895..1123 100 <- Minus
2R 9286802..9287547 149..894 100 <- Minus
2R 9287614..9287761 1..148 100   Minus

LP07727.hyp Sequence

Translation from 55 to 1032

> LP07727.hyp
MAALASLTAQYTDSENEGDASPDSQNSTASLVIIPPKRPTPTPTKQDEES
KRSKEKKKKRAKKVRRLVSYQDDTLISDEDEDRAAASSSEEESSSGDESN
SSNSQSEDSPKAKDKSNAGSGSKDGDTPMEVDEEPACFPVEERTAESYEK
DAKYAKYKFQLPPEPKGKPSAELVAKITKMYTKMNQTNMDMNRVIQDRKE
FRNPSIYDKLISFCDINEFGTNYPPEIYDPLQWGEESYYESLAAVQKTEM
VKRQKDRKDMDKVEQATALARKVEEEAKKRKSKWDQPAPSSTVVKTTLPA
LTTTVTGTKGTVISAFGSLPKKPAV*

LP07727.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG2063-PA 325 CG2063-PA 1..325 1..325 1662 100 Plus

LP07727.pep Sequence

Translation from 55 to 1032

> LP07727.pep
MAALASLTAQYTDSENEGDASPDSQNSTASLVIIPPKRPTPTPTKQDEES
KRSKEKKKKRAKKVRRLVSYQDDTLISDEDEDRAAASSSEEESSSGDESN
SSNSQSEDSPKAKDKSNAGSGSKDGDTPMEVDEEPACFPVEERTAESYEK
DAKYAKYKFQLPPEPKGKPSAELVAKITKMYTKMNQTNMDMNRVIQDRKE
FRNPSIYDKLISFCDINEFGTNYPPEIYDPLQWGEESYYESLAAVQKTEM
VKRQKDRKDMDKVEQATALARKVEEEAKKRKSKWDQPAPSSTVVKTTLPA
LTTTVTGTKGTVISAFGSLPKKPAV*

LP07727.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18961-PA 322 GF18961-PA 1..322 1..325 1160 86.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10568-PA 325 GG10568-PA 1..325 1..325 1344 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20026-PA 323 GH20026-PA 4..323 2..325 1044 74.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2063-PA 325 CG2063-PA 1..325 1..325 1662 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19205-PA 322 GI19205-PA 4..322 2..325 1056 76.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16897-PA 316 GL16897-PA 1..315 1..324 1102 78.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15217-PA 316 GA15217-PA 1..315 1..324 1095 78.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20614-PA 325 GM20614-PA 1..325 1..325 1668 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10087-PA 287 GD10087-PA 1..244 1..244 1259 98.4 Plus
Dsim\GD10088-PA 347 GD10088-PA 1..347 1..325 1210 89.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20272-PA 320 GJ20272-PA 4..320 2..325 1006 74.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15835-PA 326 GK15835-PA 1..326 1..325 956 74.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22412-PA 325 GE22412-PA 1..325 1..325 1268 95.7 Plus