Clone LP07794 Report

Search the DGRC for LP07794

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:77
Well:94
Vector:pOT2
Associated Gene/TranscriptCG9014-RA
Protein status:LP07794.pep: gold
Preliminary Size:1130
Sequenced Size:1379

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9014 2002-01-01 Sim4 clustering to Release 2
CG9014 2002-12-10 Blastp of sequenced clone
CG9014 2003-01-01 Sim4 clustering to Release 3
CG9014 2008-04-29 Release 5.5 accounting
CG9014 2008-08-15 Release 5.9 accounting
CG9014 2008-12-18 5.12 accounting

Clone Sequence Records

LP07794.complete Sequence

1379 bp (1379 high quality bases) assembled on 2002-12-10

GenBank Submission: BT003232

> LP07794.complete
CCAGCTCGGACACAACTCAGCGCCGACGTAAAAACTAACTTTTTGATCGA
AATATTGTAAAAATCGAGTTTCGGATATAGGTATAAGTACATATCGAACT
CAGTGCGACATAAACTTCGGTATAGAAATCAAACCATTTCGTCATGGGCT
TTGATCTAAACTGCATTGTGGGCCACGTTGACGAGGAGCTCATCTGTCCA
ATTTGCACAGATGTCCTGGAGGAGCCGGTCCAGTCATCGGAATGCGAGCA
CGCCTTCTGTCGCGCCTGCATCGACAAGTGGATGATCCAGAAACAGATTT
GCCCGGTGGACCGCTCCGGGCTACTGACCTCACATCTGGTGCCCGTTTCG
CGCCTAATGCGCAACATGCTATCCCGCCTAAAGATCAAGTGCACCTTCTC
GCAAAGCGGTTGTGCCCAAATGCTGGCCCTCGAGGAGTTCCGGACCCATG
TCGCCGCCTGCGAGCATAATCCCAAGGTGGTTGTCGAGTGCAGCAAGGGG
TGCGGAATGAAGGTACCCAAGGACGAGATGTCGCGCCACAACTGTGTGTT
CGAACTGCGCGAGCTGGTGGAGAAACTGGCGAAGGAGGTTTCCGATCTGA
AGCAGAAGCAATCCGATATGGAGGAGCAGAGCTCCAGCCAGCGCCGAGAG
ATGGAGCTGTTCCAGTACTATATCGCAGCACTGCGATCGACCAATCCCAT
GCTGCGCAACATTGGCGAACAACTGGACCGCTTCTCACTGATGCAGTGGG
GCCATGGACTCCCTCTGGCCAACATCCATACGTGGGGCAGTCTGATCTCC
ACGCCGGACAATCCCATGCACCTGATGGTGCGCGACGTTTTGCGTGAAAG
CGGCTGTCCGATGCATATGCTCAATATGCTGGTTGAACGTTGCCACGAGG
ATCGCTGGCCCGAAGGTCTGATGACGTTGGACGATCGCCGCGAGAACCAA
CATCTCATGAGTCGGTATGTCACCCGATTGGTGCCCGGTCTGGTCATTGG
CAAACCGTGCGTGGTTGTTCTGGGCGGCGAAAACACCCACATGCCGGAGA
ATCTGCGCCCCATCCTCGGACTGGTCATGATCTTCGTCGACGGTGTGAAT
GAGGTAATATTTGGCGAAGAGATTATTTAAGCCAATGATGGGTCACCACA
TCCTGCTTGTATCCTCCACATCTAAATTCATTTTGGTAACACAACACAAA
AGCGCAACTGGCTGCCCGTTTTCCACGTCCTTGTTTTGGAATGATGGTCA
TGTTGCTTCACTGTCTTAAATTACACGATCGTACTTCAAAAGTCGTCAAA
ATGAAAAATATAAATATGTTTTATCAATTCGAGTTACGTAAATAGAAAAC
AAACAAATGGTAAAAAAAAAAAAAAAAAA

LP07794.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9014-RA 1387 CG9014-RA 24..1385 1..1361 6770 99.9 Plus
CG9014.a 1415 CG9014.a 167..1415 105..1352 6205 99.9 Plus
CG9014.a 1415 CG9014.a 7..111 1..105 525 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13720819..13721669 1359..510 4190 99.8 Minus
chr2L 23010047 chr2L 13721723..13722132 514..105 2035 99.8 Minus
chr2L 23010047 chr2L 13722189..13722293 105..1 525 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:52:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13722161..13723013 1361..510 4215 99.9 Minus
2L 23513712 2L 13723067..13723476 514..105 2050 100 Minus
2L 23513712 2L 13723532..13723636 105..1 525 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13722161..13723013 1361..510 4225 99.8 Minus
2L 23513712 2L 13723067..13723476 514..105 2050 100 Minus
2L 23513712 2L 13723532..13723636 105..1 525 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:14:54 has no hits.

LP07794.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:15:45 Download gff for LP07794.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13722189..13722293 1..105 100   Minus
chr2L 13720817..13721666 513..1361 99 <- Minus
chr2L 13721725..13722131 106..512 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:38:40 Download gff for LP07794.complete
Subject Subject Range Query Range Percent Splice Strand
CG9014-RA 1..987 144..1130 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:01:34 Download gff for LP07794.complete
Subject Subject Range Query Range Percent Splice Strand
CG9014-RA 1..987 144..1130 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:57:21 Download gff for LP07794.complete
Subject Subject Range Query Range Percent Splice Strand
CG9014-RA 1..987 144..1130 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:52:01 Download gff for LP07794.complete
Subject Subject Range Query Range Percent Splice Strand
CG9014-RA 1..987 144..1130 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:30:55 Download gff for LP07794.complete
Subject Subject Range Query Range Percent Splice Strand
CG9014-RA 1..987 144..1130 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:19:23 Download gff for LP07794.complete
Subject Subject Range Query Range Percent Splice Strand
CG9014-RA 7..1359 1..1352 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:01:34 Download gff for LP07794.complete
Subject Subject Range Query Range Percent Splice Strand
CG9014-RA 7..1359 1..1352 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:21 Download gff for LP07794.complete
Subject Subject Range Query Range Percent Splice Strand
CG9014-RA 7..1368 1..1361 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:52:01 Download gff for LP07794.complete
Subject Subject Range Query Range Percent Splice Strand
CG9014-RA 7..1359 1..1352 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:30:55 Download gff for LP07794.complete
Subject Subject Range Query Range Percent Splice Strand
CG9014-RA 7..1368 1..1361 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:45 Download gff for LP07794.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13722161..13723010 513..1361 99 <- Minus
2L 13723069..13723475 106..512 100 <- Minus
2L 13723532..13723636 1..105 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:45 Download gff for LP07794.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13722161..13723010 513..1361 99 <- Minus
2L 13723069..13723475 106..512 100 <- Minus
2L 13723532..13723636 1..105 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:15:45 Download gff for LP07794.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13722161..13723010 513..1361 99 <- Minus
2L 13723069..13723475 106..512 100 <- Minus
2L 13723532..13723636 1..105 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:21 Download gff for LP07794.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13722161..13723010 513..1361 99 <- Minus
arm_2L 13723069..13723475 106..512 100 <- Minus
arm_2L 13723532..13723636 1..105 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:23:56 Download gff for LP07794.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13722161..13723010 513..1361 99 <- Minus
2L 13723069..13723475 106..512 100 <- Minus
2L 13723532..13723636 1..105 100   Minus

LP07794.hyp Sequence

Translation from 143 to 1129

> LP07794.hyp
MGFDLNCIVGHVDEELICPICTDVLEEPVQSSECEHAFCRACIDKWMIQK
QICPVDRSGLLTSHLVPVSRLMRNMLSRLKIKCTFSQSGCAQMLALEEFR
THVAACEHNPKVVVECSKGCGMKVPKDEMSRHNCVFELRELVEKLAKEVS
DLKQKQSDMEEQSSSQRREMELFQYYIAALRSTNPMLRNIGEQLDRFSLM
QWGHGLPLANIHTWGSLISTPDNPMHLMVRDVLRESGCPMHMLNMLVERC
HEDRWPEGLMTLDDRRENQHLMSRYVTRLVPGLVIGKPCVVVLGGENTHM
PENLRPILGLVMIFVDGVNEVIFGEEII*

LP07794.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9014-PB 328 CG9014-PB 1..328 1..328 1749 100 Plus
CG9014-PA 328 CG9014-PA 1..328 1..328 1749 100 Plus
elgi-PB 315 CG17033-PB 1..314 1..318 804 45.3 Plus
elgi-PA 315 CG17033-PA 1..314 1..318 804 45.3 Plus
Traf6-PA 475 CG10961-PA 91..194 10..108 162 35.2 Plus

LP07794.pep Sequence

Translation from 143 to 1129

> LP07794.pep
MGFDLNCIVGHVDEELICPICTDVLEEPVQSSECEHAFCRACIDKWMIQK
QICPVDRSGLLTSHLVPVSRLMRNMLSRLKIKCTFSQSGCAQMLALEEFR
THVAACEHNPKVVVECSKGCGMKVPKDEMSRHNCVFELRELVEKLAKEVS
DLKQKQSDMEEQSSSQRREMELFQYYIAALRSTNPMLRNIGEQLDRFSLM
QWGHGLPLANIHTWGSLISTPDNPMHLMVRDVLRESGCPMHMLNMLVERC
HEDRWPEGLMTLDDRRENQHLMSRYVTRLVPGLVIGKPCVVVLGGENTHM
PENLRPILGLVMIFVDGVNEVIFGEEII*

LP07794.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21698-PA 332 GF21698-PA 1..322 1..322 1357 75.8 Plus
Dana\GF24099-PA 315 GF24099-PA 1..314 1..318 799 45.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10187-PA 332 GG10187-PA 1..320 1..320 1494 87.5 Plus
Dere\GG15934-PA 315 GG15934-PA 1..314 1..318 799 45.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13876-PA 336 GH13876-PA 1..321 1..321 1084 60.7 Plus
Dgri\GH14771-PA 315 GH14771-PA 1..314 1..318 791 44.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9014-PB 328 CG9014-PB 1..328 1..328 1749 100 Plus
CG9014-PA 328 CG9014-PA 1..328 1..328 1749 100 Plus
elgi-PB 315 CG17033-PB 1..314 1..318 804 45.3 Plus
elgi-PA 315 CG17033-PA 1..314 1..318 804 45.3 Plus
Traf6-PA 475 CG10961-PA 91..194 10..108 162 35.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17673-PA 334 GI17673-PA 1..321 1..321 1212 65.7 Plus
Dmoj\GI10082-PA 334 GI10082-PA 1..321 1..321 1191 65.4 Plus
Dmoj\GI11873-PA 315 GI11873-PA 1..314 1..318 796 45 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15421-PA 314 GL15421-PA 1..314 1..315 1044 59 Plus
Dper\GL25216-PA 315 GL25216-PA 1..314 1..318 797 45 Plus
Dper\GL25685-PA 193 GL25685-PA 1..193 1..194 655 61.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21478-PA 327 GA21478-PA 1..320 1..321 1063 58.9 Plus
Dpse\GA14285-PA 315 GA14285-PA 1..314 1..318 797 45 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25378-PA 332 GM25378-PA 1..322 1..322 1630 94.4 Plus
Dsec\GM25563-PA 315 GM25563-PA 1..314 1..318 799 45.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22050-PA 332 GD22050-PA 1..322 1..322 1630 94.4 Plus
Dsim\GD14579-PA 314 GD14579-PA 1..313 1..318 745 44.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17869-PA 334 GJ17869-PA 1..322 1..322 1224 66.5 Plus
Dvir\GJ18365-PA 334 GJ18365-PA 1..321 1..321 1204 66 Plus
Dvir\GJ13569-PA 315 GJ13569-PA 1..314 1..318 798 44.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16866-PA 361 GK16866-PA 1..322 1..322 1203 67.4 Plus
Dwil\GK24545-PA 323 GK24545-PA 1..323 1..323 1071 60.1 Plus
Dwil\GK24430-PA 315 GK24430-PA 1..314 1..318 801 45.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11492-PA 332 GE11492-PA 1..322 1..322 1544 87.9 Plus
Dyak\GE22867-PA 315 GE22867-PA 1..314 1..318 799 45.3 Plus
Dyak\GE22283-PA 315 GE22283-PA 29..314 29..318 698 43.4 Plus