Clone LP07906 Report

Search the DGRC for LP07906

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:79
Well:6
Vector:pOT2
Associated Gene/TranscriptCG32447-RB
Protein status:LP07906.pep: gold
Preliminary Size:2686
Sequenced Size:2990

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14571 2001-01-01 Release 2 assignment
CG7155 2001-01-01 Release 2 assignment
CG32447 2002-06-12 Blastp of sequenced clone
CG32447 2003-01-01 Sim4 clustering to Release 3
CG32447 2008-04-29 Release 5.5 accounting
CG32447 2008-08-15 Release 5.9 accounting
CG32447 2008-12-18 5.12 accounting

Clone Sequence Records

LP07906.complete Sequence

2990 bp (2990 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122212

> LP07906.complete
TCGATCGGAGCGAGCGGACGTTTTAGCGCGAGAATCGAGAAGAAGAATTC
ATGATCTAGGGCCTGCGAGGACTGAAGAATTTACGAACCTGAACAATCGC
GATCGCGAGTGCGTGGTTAGTGTGCGTTTGCAAGAGATGTGCCGCGTTTG
ATTATATTGTCAGAGGTCCAGGGCATCGAAGGTCACCACATCCAATGGCC
GGTAGACGCCACCTGCTGCTGATCCTGCTGCTGATCATGCAGTTGATCGC
CACCACGCCGGCGTCGCGCAGCCTCAGCGTTAATGGCAACAACATTTGGC
GGCGGGTGCGCCTGGTGACCAGCCAGGAATCGGATCGCAACGCCTACCAG
GTGCTTAAGCCGAGTAGCCGTAATGCCACCAGCACCACCACTACTACCAG
CACGACTACAAGTACTACAAGTAGCACCACTAGTACCACTACTCCGGCAG
CTCCTCAGACCCAGCGATCTGCCAAACAATTGGATCTCAATTTTCCGGGT
GGCAATGTCTCCAGTGCTGCCCGTCTCGAAATGTCGACGGAATTCTTTGT
GGTACCCACACTATCGGCCAGCAGTTCTAGCAGCACCACGTCCACCACCA
CACCAGCCACGCCCCGTCGGAGTTCAGGGGCGAAGGCGCGAGCAGCCGGC
ACCACTGGACGGGTGACTCCCGGGAGCAGCTCCAACAGCACACCGCCCAG
TATAGTGTCCACCCACTTGCCCTTCGCGGGACTACGCAAGGAGCCGTGGG
TGGTGCCGGTGCTAGTCCTGGCCACCCTCACCATGCTCATGATGGCAGCG
TTCGAGATCTTTGTGCTCTTCAAGGCCTGGCGGACGTCCCCGTCGCGTAG
GCACCTCTTTCTGGGCCAGATGCTGCTTCTCGGTCTGTTCGCCTGCGCTA
GTTTGGGGGCCATCATCACCGCACAGCCCTCGTTGATCAGTTGCGGGGCC
ATCCGCTTCGGAGTGGGCGTGGCCTACGCCCTGGTCTTTGCCGCCCTGCT
GGTCAAATGCGTATTTCTGATTAGTCTAAATGGAGGGGTGTATCTGCCGG
CTCCATACCAGGGATTGCTGCTCCTCTTTGCGCTGCTCATCCAGGTAGCG
ATCGGAGGGCAGTGGCTGCTCACCCAACCACCGGAGGTATACACCACCAG
TGTGCCTGTGATGGGCAGTGGCTTCCTTAGCACCACGGTGGCCTCACAGA
CCAACTACTCGGCACTGTTTTACCCCACGTCCTACACAACGCTGGACGGG
ACTCCGGAGATCTACACCCGGATAGCGGCGGTTAGCACCGTACTAATACC
GCTCTGCAAGACGCAGTTCTCGGAGCTGCTCTTCTCGCTGATCTACATTG
TCTTTCTGATCGTCTTCATCGCCGTGCTAGCCATCAAGTCGCGCGGCATC
AGGGACAACTACCGTGAGGCCACCTACATTGGGCTGGCCATCGGAGGAGC
CATCCCCATCTGGCTGGGATGGATGCTATGCGGCCTGGCCGTGGCCGAGC
GGCACAAGGACGCTTGCGTGGCCTTCGGTCTGGTAGCCACATCCGCCACG
GTCTTCTTGGTGATGTTCATGCCCAAGGGCAGGCAACTGGCGGCCATGGG
CAAGGAGGGCCTGTACGTGGAGGACCGCGAGGAGCAGTTCAGTTCCCTGA
GTCGCGCCGGTTCCGGCTACTCGCCCTCGTTCTTCCACTTCAAGCCCATC
AAGTACGGCGTGATGAGCGGCTGCGGACTGCCCAACTCTGCATCCAACAC
GGGCCAGGGACTCAGCTCCAAACACTGCTCCAGTGCCAACAATGGAGGTG
ATCGGGTTGCTCTGGTCACTGCCGCACCGCCGAGCTATACGCGTATGTAT
CACTATTTTCCAGCACACCTGAGTCCGCACCCGTTCTGCTATTATCCTCC
CGCACCACCACCACCACTGCCACCGCAACCACCGCCACCACAGCAAGCCG
CACCGCCCACGCTCACGCCGTTGACCCTCAAGCAGTTGGGCAACTCGCTA
AGCTCCATGACACAAGCGGCGCAGTTGGCCAAAACGCTGCGCTATGCGCC
AGGCATGTTTATACGACCAGACGAAACGAATCTTTACACCACGCTGGAGC
CCACGTTGAGCAGCAATCCGAATGTGTACTTCCAGCGCAGCGGGGCCGTC
CATCCCGGCATCCTGTACTGAGTAATCCCGAGGAGATCCCAAGGAGTGCC
GAGCATCGAGAACACTGGAACTGAGTATTTTTTCTTAACTTTAAGGTACG
GCTCCCAAGGAGCAGCAATAAGAAAATGATATTCCACGATCATTTCACAT
AGTGTAATATTTTTGTCATAACTGCTAAGATCTTTGCATCTAAGTTTAGT
AGACTAAGGATGGCCCCACCTGACCCTGGGAATTTTGATATATTCCTATC
GGTCGGTCAGAGGGTTCGTGGAAGTTCGTGGATCTGCAGAAAGCAACACC
TACATATAGTTTAGCAATATCGACCATCTACACTGGTTACATTTTACACA
CTCGCTGTAGCAACGATTCTATCAAATAAGTCCTTGAAGGCCTTGCGATT
CTTAAATAATTATACCGAGTTATTTCTGGCTTGTGATTTATTAAAGTAAA
TTGTCCCTCAAAAGTTTTGATAGCATTCAAACAGCTCTACTGCTCTGAAA
TAACTCAAGAACGCAGGGGCAAACCATGTGGATGAAATAACTTGGCTCGA
ATTTGCGTTAAGAGCTTTCAGCTCAATTGTAAAGGCAGTGAGAAGTCCCT
GGAATCCACCTGACGCTCGTCGAGTATATTTGTACAGATGTTTTGCCCCT
GTGAACACACATACTCCAGTAAGTAATAGTAATAGGCTTAATACCCATTT
GACTAGCCAAGTAAAGCGATCGCCTAAGCAAACACGAAATGTTGTACATA
CTGCAATGGCCCCGAGCCACACACACACACACTCGGTGAGCAAGCCAATC
TCAATAAAAGAAAAGAAGCCGAAAAAAAAAAAAAAAAAAA

LP07906.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG32447.e 3893 CG32447.e 48..3020 1..2973 14850 99.9 Plus
CG32447-RB 3256 CG32447-RB 72..3044 1..2973 14850 99.9 Plus
CG32447.d 3470 CG32447.d 48..3020 1..2973 14850 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21693483..21695282 1800..1 9000 100 Minus
chr3L 24539361 chr3L 21681739..21682660 2971..2050 4595 99.9 Minus
chr3L 24539361 chr3L 21683250..21683503 2053..1800 1270 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:52:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21704548..21706347 1800..1 9000 100 Minus
3L 28110227 3L 21692801..21693724 2973..2050 4605 99.9 Minus
3L 28110227 3L 21694315..21694568 2053..1800 1270 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21697648..21699447 1800..1 9000 100 Minus
3L 28103327 3L 21685901..21686824 2973..2050 4605 99.8 Minus
3L 28103327 3L 21687415..21687668 2053..1800 1270 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:55:35 has no hits.

LP07906.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:56:44 Download gff for LP07906.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21681739..21682657 2053..2971 99 <- Minus
chr3L 21683251..21683502 1801..2052 84 <- Minus
chr3L 21693483..21694840 443..1800 100 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:02:19 Download gff for LP07906.complete
Subject Subject Range Query Range Percent Splice Strand
CG32447-RB 1..1977 195..2171 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:22:33 Download gff for LP07906.complete
Subject Subject Range Query Range Percent Splice Strand
CG32447-RB 1..1977 195..2171 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:28:46 Download gff for LP07906.complete
Subject Subject Range Query Range Percent Splice Strand
CG32447-RB 1..1977 195..2171 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:13:20 Download gff for LP07906.complete
Subject Subject Range Query Range Percent Splice Strand
CG32447-RB 1..1977 195..2171 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:03 Download gff for LP07906.complete
Subject Subject Range Query Range Percent Splice Strand
CG32447-RB 1..1977 195..2171 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:02:18 Download gff for LP07906.complete
Subject Subject Range Query Range Percent Splice Strand
CG32447-RB 1..2971 1..2971 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:22:33 Download gff for LP07906.complete
Subject Subject Range Query Range Percent Splice Strand
CG32447-RB 1..2971 1..2971 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:46 Download gff for LP07906.complete
Subject Subject Range Query Range Percent Splice Strand
CG32447-RB 19..2989 1..2971 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:13:20 Download gff for LP07906.complete
Subject Subject Range Query Range Percent Splice Strand
CG32447-RB 1..2971 1..2971 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:03 Download gff for LP07906.complete
Subject Subject Range Query Range Percent Splice Strand
CG32447-RB 19..2989 1..2971 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:56:44 Download gff for LP07906.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21692803..21693721 2053..2971 99 <- Minus
3L 21694316..21694567 1801..2052 100 <- Minus
3L 21704548..21706347 1..1800 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:56:44 Download gff for LP07906.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21692803..21693721 2053..2971 99 <- Minus
3L 21694316..21694567 1801..2052 100 <- Minus
3L 21704548..21706347 1..1800 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:56:44 Download gff for LP07906.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21692803..21693721 2053..2971 99 <- Minus
3L 21694316..21694567 1801..2052 100 <- Minus
3L 21704548..21706347 1..1800 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:46 Download gff for LP07906.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21685903..21686821 2053..2971 99 <- Minus
arm_3L 21687416..21687667 1801..2052 100 <- Minus
arm_3L 21697648..21699447 1..1800 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:46:06 Download gff for LP07906.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21685903..21686821 2053..2971 99 <- Minus
3L 21687416..21687667 1801..2052 100 <- Minus
3L 21697648..21699447 1..1800 100   Minus

LP07906.pep Sequence

Translation from 194 to 2170

> LP07906.pep
MAGRRHLLLILLLIMQLIATTPASRSLSVNGNNIWRRVRLVTSQESDRNA
YQVLKPSSRNATSTTTTTSTTTSTTSSTTSTTTPAAPQTQRSAKQLDLNF
PGGNVSSAARLEMSTEFFVVPTLSASSSSSTTSTTTPATPRRSSGAKARA
AGTTGRVTPGSSSNSTPPSIVSTHLPFAGLRKEPWVVPVLVLATLTMLMM
AAFEIFVLFKAWRTSPSRRHLFLGQMLLLGLFACASLGAIITAQPSLISC
GAIRFGVGVAYALVFAALLVKCVFLISLNGGVYLPAPYQGLLLLFALLIQ
VAIGGQWLLTQPPEVYTTSVPVMGSGFLSTTVASQTNYSALFYPTSYTTL
DGTPEIYTRIAAVSTVLIPLCKTQFSELLFSLIYIVFLIVFIAVLAIKSR
GIRDNYREATYIGLAIGGAIPIWLGWMLCGLAVAERHKDACVAFGLVATS
ATVFLVMFMPKGRQLAAMGKEGLYVEDREEQFSSLSRAGSGYSPSFFHFK
PIKYGVMSGCGLPNSASNTGQGLSSKHCSSANNGGDRVALVTAAPPSYTR
MYHYFPAHLSPHPFCYYPPAPPPPLPPQPPPPQQAAPPTLTPLTLKQLGN
SLSSMTQAAQLAKTLRYAPGMFIRPDETNLYTTLEPTLSSNPNVYFQRSG
AVHPGILY*

LP07906.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24644-PA 662 GF24644-PA 1..662 1..658 2822 93 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13210-PA 704 GG13210-PA 1..704 1..658 3318 91.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15099-PA 681 GH15099-PA 54..681 34..658 2564 83.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG32447-PB 658 CG32447-PB 1..658 1..658 3368 100 Plus
CG32447-PC 637 CG32447-PC 1..637 1..658 3221 96.8 Plus
CG32447-PD 574 CG32447-PD 1..562 1..567 2705 95.6 Plus
CG32447-PD 574 CG32447-PD 512..574 598..658 210 69.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13749-PA 721 GI13749-PA 23..721 19..658 2496 78.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25281-PA 533 GL25281-PA 21..533 18..545 1811 75.8 Plus
Dper\GL25282-PA 597 GL25282-PA 7..84 542..619 428 98.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16912-PA 675 GA16912-PA 21..675 18..658 2710 90.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22118-PA 706 GM22118-PA 1..706 1..658 3352 92.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12096-PA 724 GD12096-PA 1..662 1..614 3053 90.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14094-PA 664 GJ14094-PA 24..664 16..658 2558 83.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17129-PA 678 GK17129-PA 29..678 28..658 2605 83.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22304-PA 634 GE22304-PA 1..634 1..658 3228 95.1 Plus
Dyak\GE22989-PA 160 GE22989-PA 30..160 530..658 398 82.4 Plus
Dyak\GE22989-PA 160 GE22989-PA 1..58 1..58 221 96.6 Plus

LP07906.hyp Sequence

Translation from 194 to 2170

> LP07906.hyp
MAGRRHLLLILLLIMQLIATTPASRSLSVNGNNIWRRVRLVTSQESDRNA
YQVLKPSSRNATSTTTTTSTTTSTTSSTTSTTTPAAPQTQRSAKQLDLNF
PGGNVSSAARLEMSTEFFVVPTLSASSSSSTTSTTTPATPRRSSGAKARA
AGTTGRVTPGSSSNSTPPSIVSTHLPFAGLRKEPWVVPVLVLATLTMLMM
AAFEIFVLFKAWRTSPSRRHLFLGQMLLLGLFACASLGAIITAQPSLISC
GAIRFGVGVAYALVFAALLVKCVFLISLNGGVYLPAPYQGLLLLFALLIQ
VAIGGQWLLTQPPEVYTTSVPVMGSGFLSTTVASQTNYSALFYPTSYTTL
DGTPEIYTRIAAVSTVLIPLCKTQFSELLFSLIYIVFLIVFIAVLAIKSR
GIRDNYREATYIGLAIGGAIPIWLGWMLCGLAVAERHKDACVAFGLVATS
ATVFLVMFMPKGRQLAAMGKEGLYVEDREEQFSSLSRAGSGYSPSFFHFK
PIKYGVMSGCGLPNSASNTGQGLSSKHCSSANNGGDRVALVTAAPPSYTR
MYHYFPAHLSPHPFCYYPPAPPPPLPPQPPPPQQAAPPTLTPLTLKQLGN
SLSSMTQAAQLAKTLRYAPGMFIRPDETNLYTTLEPTLSSNPNVYFQRSG
AVHPGILY*

LP07906.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG32447-PB 658 CG32447-PB 1..658 1..658 3368 100 Plus
CG32447-PC 637 CG32447-PC 1..637 1..658 3221 96.8 Plus
CG32447-PD 574 CG32447-PD 1..562 1..567 2705 95.6 Plus
CG32447-PD 574 CG32447-PD 512..574 598..658 210 69.8 Plus