Clone LP07955 Report

Search the DGRC for LP07955

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:79
Well:55
Vector:pOT2
Associated Gene/TranscriptCG4655-RA
Protein status:LP07955.pep: validated full length
Preliminary Size:2080
Sequenced Size:1984

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4655 2001-01-01 Release 2 assignment
CG4655 2001-07-04 Blastp of sequenced clone
CG4655 2003-01-01 Sim4 clustering to Release 3
CG4655 2008-04-29 Release 5.5 accounting

Clone Sequence Records

LP07955.complete Sequence

1984 bp (1984 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060450

> LP07955.complete
TTACTCTTACCAACGGCCACTGTAATAAAATAAGATAACATCTTCATGGG
ACACTGATAGTGCATAGATAGTGGAAAATTTTTGTCTTAGCGTTGCAAAC
TCGGATGCATCCCATCGCAGATTCTCATGGATGCGGGGAGGGGGCGAGCT
TTTGCAAATATAGTCGCAGGAAGCAAGAAAAATGGTCTGCGCATGGACAG
TGGACTTAAAAATATTGACCACAAGTAAAGCAAGCAAAATAAATTGGACG
AAAATCAGAAACCACAATAGCAGCAACAAATGCCAGGCATGAGCGAGAGG
AAAATAGCCGCAGAACAACGTCAGGTAACCGATATTAACATAACTACCAG
GTGGTGCTGTGGTGCAGTGGTGCAGCGGTGGAGTGGTACGAGTACTGCAA
GCAACACGGCAACCCGCTTTGTCGTCAGACTCGTTAGATAGAAACCCATC
TTCACCCCGCCTTCGAATCCCCAATCCCCCATTCCCCCATTCCCCGATTC
TCCGATTCCAGGCAACTTCCTCCGACGTCAACGGCAATACCCGTTCGTTG
CGGCCAAGTTCTGTGCCGCAATTTGGCCCAAACCCAAACCCAAAGCCAAA
CCACCACAGAGACTTCCTTGTTTCGTGCTAGTCTCGTCTCGTTGGCAGTA
GCACTTTGATGACTTTGGCTATAAGGCCGAGTCGCTCGCTCTTGCCCCAC
CACCACCATCGAGTATAATGGCCAGGCTGTCTCCACCTCCTCCTCCACCC
CATGCAACTCCTCCTCCCCCAATCAACCCACAATTTCTTTTAGCCATGTG
CAGTGGGAAGCACTCTTGCCACGAAGATTCACAGTTTGCTGGCTCTAGCC
AAATGAATTTCAAATTGGAATCCCTTTGGGGTAAAACAATTAACAGCGTT
GTGGTCGATATTCCCACTGCCCGGATTTATTAGCAGTGTTGCAGCTATTT
TTAGGCTCGCAGACACGATGTATAATAATTATTTAACGGCAACGACGCGT
AACTAAATATGTTGCCTCTTTTATACAAGGTATGCACTTCAGGCTGATTA
GCTATTCAAATTATGAATGGCCCGGCTAATCAGCCAATTCTGGATTCTGA
GAACCTCTGAGAACCTCTGCTGTGGCGCCAGCTAATCCGCTGAAAGTTTA
TGGGTGGGAATCTTTTCTTCTCGAGCTGCACAGAATCTTTTTGCATATTA
CCCAACGACCACCACCGGGGTAAAGTACAAAAACAAAAAGTGTTCAATAA
AAAATTGGGAAAAAAGGCATAATCAACGTGCACTGAACTTGGCGTGGGAA
CTACCAACTTTCTGCACCATTTATCAGGTTTTCTGATGACGGCTGTGGCG
CAAAAAGAAAAACGCTCCTGAGCCCACAGGCAGATTGTGAGCATTTACAG
CTGGCTGCAGCTTTCAGTTTTTCCACTACGCAAATCACACCGGAAAAAGT
GCAAAAAACTAGACTGAAGTTCCCACAGTTGACCTTTCTAATTGCCTCTA
GATGTGACTGATGGGTCTCAGATAATTCTCTTCAGAAAAAAATTTGTTCA
AATAAGACTACTTTAGTAAGCAGCAGCTTGATTAGTGCTACTTTGCTATG
GACTCATTAGGATTATTTTACGTTGTATTAATTTTCAGGAACTCCATGCA
ATTAATCTTAAATATAGCTTACCCTTCCAACCTGTGCATTAAATCAATCA
ACGCTTCGGCTATTTGCATTACAGGCGAGATCTTCCTGATGCGACCCCTC
GAGGACATTGCCTTCATCACGCATGTGGGTGATCCGGTGCTGCTCACCGT
AATTGCGGAAGAGGTTAAGGTGGGTCGTGACGAGCCGCCCGCACTGGCCT
CCACGGTCCAATTGGCGTTCTTTCTGCCCGATCGCACCAATTCGCCGCCG
TACTTCGAGAACGATCAGTAAGTACCAGCAGGTTCCCATCGAAGCAGCCG
GGGGGCATACTACATAAAAAAAAAAAAAAAAAAA

LP07955.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
Cad86C.b 6153 Cad86C.b 1554..1747 1724..1917 970 100 Plus
Cad86C.f 6756 Cad86C.f 1554..1747 1724..1917 970 100 Plus
Cad86C.d 6775 Cad86C.d 1554..1747 1724..1917 970 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6665605..6667569 1..1965 9825 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:52:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10840068..10842051 1..1984 9905 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10580899..10582882 1..1984 9905 99.9 Plus
Blast to na_te.dros performed 2019-03-15 13:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 4587..4625 1426..1464 132 82.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2752..2888 218..349 123 61.7 Plus

LP07955.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:59:35 Download gff for LP07955.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6665605..6667569 1..1965 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:38:49 Download gff for LP07955.complete
Subject Subject Range Query Range Percent Splice Strand
CG4655-RA 1310..1512 1717..1921 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:13:52 Download gff for LP07955.complete
Subject Subject Range Query Range Percent Splice Strand
Cad86C-RC 1262..1466 1717..1923 97   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:19:19 Download gff for LP07955.complete
Subject Subject Range Query Range Percent Splice Strand
Cad86C-RE 1178..1382 1717..1923 97   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:45:09 Download gff for LP07955.complete
Subject Subject Range Query Range Percent Splice Strand
CG4655-RA 1310..1512 1717..1921 98   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:47:19 Download gff for LP07955.complete
Subject Subject Range Query Range Percent Splice Strand
Cad86C-RE 1178..1382 1717..1923 97   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:06:43 Download gff for LP07955.complete
Subject Subject Range Query Range Percent Splice Strand
CG4655-RA 1310..1512 1717..1921 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed on 2011-03-16 20:13:52 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-03 22:19:19 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:45:09 Download gff for LP07955.complete
Subject Subject Range Query Range Percent Splice Strand
CG4655-RA 1310..1512 1717..1921 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-26 20:47:19 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:59:35 Download gff for LP07955.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10840068..10842032 1..1965 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:59:35 Download gff for LP07955.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10840068..10842032 1..1965 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:59:35 Download gff for LP07955.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10840068..10842032 1..1965 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:19:19 Download gff for LP07955.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6665790..6667754 1..1965 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:22:56 Download gff for LP07955.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10580899..10582863 1..1965 100   Plus

LP07955.pep Sequence

Translation from 1597 to 1920

> LP07955.pep
MDSLGLFYVVLIFRNSMQLILNIAYPSNLCIKSINASAICITGEIFLMRP
LEDIAFITHVGDPVLLTVIAEEVKVGRDEPPALASTVQLAFFLPDRTNSP
PYFENDQ*

LP07955.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17906-PA 478 GF17906-PA 413..478 42..107 344 98.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17727-PA 499 GG17727-PA 434..499 42..107 354 98.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18062-PA 373 GH18062-PA 308..373 42..107 323 90.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
Cad86C-PG 1008 CG42601-PG 422..486 42..106 331 98.5 Plus
Cad86C-PE 1915 CG42601-PE 394..458 42..106 331 98.5 Plus
Cad86C-PD 1943 CG42601-PD 422..486 42..106 331 98.5 Plus
Cad86C-PC 1943 CG42601-PC 422..486 42..106 331 98.5 Plus
Cad86C-PF 1949 CG42601-PF 422..486 42..106 331 98.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23741-PA 454 GI23741-PA 389..454 42..107 323 92.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21919-PA 1831 GL21919-PA 379..444 42..107 350 97 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26445-PA 1912 GA26445-PA 379..444 42..107 350 97 Plus
Dpse\GA26445-PB 1841 GA26445-PB 388..453 42..107 350 97 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23901-PA 502 GM23901-PA 437..502 42..107 355 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18713-PA 503 GD18713-PA 438..503 42..107 354 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10587-PA 1838 GJ10587-PA 308..372 42..106 334 93.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13902-PA 439 GK13902-PA 374..439 42..107 334 95.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26052-PA 506 GE26052-PA 441..506 42..107 357 98.5 Plus

LP07955.hyp Sequence

Translation from 1597 to 1920

> LP07955.hyp
MDSLGLFYVVLIFRNSMQLILNIAYPSNLCIKSINASAICITGEIFLMRP
LEDIAFITHVGDPVLLTVIAEEVKVGRDEPPALASTVQLAFFLPDRTNSP
PYFENDQ*

LP07955.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:01:18
Subject Length Description Subject Range Query Range Score Percent Strand
Cad86C-PG 1008 CG42601-PG 422..486 42..106 331 98.5 Plus
Cad86C-PE 1915 CG42601-PE 394..458 42..106 331 98.5 Plus
Cad86C-PD 1943 CG42601-PD 422..486 42..106 331 98.5 Plus
Cad86C-PC 1943 CG42601-PC 422..486 42..106 331 98.5 Plus
Cad86C-PF 1949 CG42601-PF 422..486 42..106 331 98.5 Plus