Clone LP07963 Report

Search the DGRC for LP07963

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:79
Well:63
Vector:pOT2
Associated Gene/TranscriptCG8036-RB
Protein status:LP07963.pep: gold
Sequenced Size:2239

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8036 2003-01-01 Sim4 clustering to Release 3
CG8036 2004-10-02 Blastp of sequenced clone
CG8036 2008-04-29 Release 5.5 accounting
CG8036 2008-08-15 Release 5.9 accounting
CG8036 2008-12-18 5.12 accounting

Clone Sequence Records

LP07963.complete Sequence

2239 bp (2239 high quality bases) assembled on 2004-10-02

GenBank Submission: BT016067

> LP07963.complete
CAGAAGCCGGCAGCAGTGGTCCGTTGATAACTCCGACTCGAGCTACTTAT
CCACCACGTCGATACTCTTGTCTGTCTATTGCAAACATAGAGGAGTCACC
CTTTGGCTAACGAATCCGAAACTCCCGAGTTTTGTTGTGCAACATATCAA
AAACCGCATTTGTTCGGATCCAATTTACATTCGCATTTCAAAGATGTCGT
ACCACAAGCCCGAAGCTAAGACCGTCCAGGATCTGAAAGATCTGGCCCAG
AAACTGCGAATTCACTCTATCAACGCCACCCAGGCCTCCAAATCGGGCCA
TCCCACATCATGTGCCTCGATCGCTGAGATCATGTCCGTGCTGTTCTTCC
AGCAGCTGCGCCTGAACCTGAAGCACCCACGCGATCCCTCCAGCGATCGC
TTCATCCTGTCCAAAGGACACGCTGCTCCCATTCTGTATGCCGCCTGGGC
TGAGGCTGGTCTCTTCCCCATCGCGGATCTGAACAACCTGCGCAAGATCG
ACAGCGATCTGGAGGGTCACCCGACGCCTCGTCTGAACTTCATCGATGTG
GGCACTGGATCCCTGGGACAGGGTGTCGCCGTCGGCGCTGGCATGGCCTA
TGTGGGCAAGAACTTCGACAAGGCCGACTACCGCACCTACGTGGTGGTGG
GTGATGGTGAGTCCGCCGAGGGTTCCATCTGGGAGTCGCTGCACTTTGCC
GGCCACTATAAACTGGACAACCTTTGCGTGATCTTTGATGTGAACCGCTT
GGGCCAGTCGGAGGCCACCTCCCTGCAGCATAAGCTGGATGTTTACCGTG
ATCGTCTGGAGGCCTTCGGCTTTAATGCCGTCGTTGTCGATGGTCATGAT
GTCGAGGAATTGAGCAAGGCTTTCCATTGTGCTGCAATCACCAAGAACAA
GCCCACCGCCATCATTGCAAAGACGTTCAAGGGCAGGGACTTCCCCAACA
TCGAGGATTTGGACAACTGGCACGGCAAGCCACTGGGCGACAAGGCCGCC
GAAGTGGTGAAGCATCTGGAGGGACTGATTGTCAACAAGAACGTCAAGCT
GACCCCTAAGCCGGTGCCCAAGACTGGTGCTGCTCCCGACGTGGACATCA
ACAACATTAAGTTGAGCTCGCCACCCGCCTACAAGCTGGGTGATTCCATT
GCCACCCGTTTGGCCTATGGAACAGCTCTGGCCAAGATTGGCCAGAACAA
CCTGCGTGTTGTTGCCCTAGACGGAGACACCAAGAACTCAACTTTCTCCG
ACAAGCTGAAGAACCTCGACCCGCAGCGCTACATTGAGTGCTTCATCGCT
GAGCAGAATCTTGTGGGAGTGGCCGTTGGAGCCGCCTGCCGTCGCCGCAC
TGTGGCCTTTGTGTCCACCTTTGCCACCTTCTTCACCCGTGCCTTCGATC
AGATCCGTATGGGCGCCATCTCGCAGACGAACGTTAACTTTGTGGGCTCC
CACTGCGGCTGCAGTATCGGTGAGGATGGTCCTTCGCAGATGGGTCTGGA
GGACATTGCCATGTTCCGCACCATTCCGGGCAGCACCATCTTCTATCCCT
CCGATGCAGTGAGCACGGAGCGTGCCGTCGAACTGGCCGCCAACACCAAG
GGTGTCTGCTTCATCCGTACGTCCCGTCCCAACACCTGTGTGATCTACGA
CAACGAGGAACCCTTCACCATTGGCCGCGGCAAGGTGGTGCGCCAAAAGA
GCTCCGACGAGGTGCTTCTGATCGGAGCTGGAATCACTTTGTACGAGTGC
CTGGCTGCCGCCGATCAGCTGGAGAAGAACTGCATCACCGTCCGTGTGAT
CGATCCGTTCACCGTGAAGCCATTGGACGCCGAGCTGATCATCGAGCACG
GCAAGCAGTGCGGAGGACGCGTAGTCGTCGTGGAGGATCACTACCAGCAA
GGAGGCCTGGGTGAAGCTGTGCTGAGTGCCCTGGCTGGCGAGCGCAACTT
CGTTGTCAAGCACTTGTACGTGCCCACCGTGCCACGTTCGGGTCCTCCGT
CGGTACTCATCGATATGTTCGGCATCTCCGCACGTCACGTCGTCAACGCC
GTTAACGAGATCCTCAAGGATTAGGGGACCAGTCGTGATCTGGCTACATT
CATTTACCGCCTACAGGAATTCCCCCAGTTACTACTTACTTCCAATATTA
CCATTCCCTCTAAGATTGTTAATTGCTTCATTGATTTGAACCTTACATCA
TGGAAATAAAATATCTTTAATAAAAAAAAAAAAAAAAAA

LP07963.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8036-RB 2621 CG8036-RB 273..2498 1..2226 11130 100 Plus
CG8036-RC 2451 CG8036-RC 103..2328 1..2226 11130 100 Plus
CG8036.a 2022 CG8036.a 70..1998 298..2226 9645 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4497682..4499286 297..1901 8010 99.9 Plus
chr3R 27901430 chr3R 4499350..4499674 1897..2221 1595 99.4 Plus
chr3R 27901430 chr3R 4495613..4495909 1..297 1470 99.7 Plus
chr3L 24539361 chr3L 18282047..18282734 1962..1275 1070 77 Minus
chr3L 24539361 chr3L 18283319..18283841 745..223 1010 79.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:52:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8671710..8673314 297..1901 8010 99.9 Plus
3R 32079331 3R 8673378..8673707 1897..2226 1650 100 Plus
3R 32079331 3R 8669632..8669928 1..297 1485 100 Plus
3L 28110227 3L 18292405..18293092 1962..1275 1100 77.3 Minus
3L 28110227 3L 18293677..18294199 745..223 1010 79.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8412541..8414145 297..1901 8010 99.9 Plus
3R 31820162 3R 8414209..8414538 1897..2226 1650 100 Plus
3R 31820162 3R 8410463..8410759 1..297 1485 100 Plus
3L 28103327 3L 18286777..18287299 745..223 1010 79.5 Minus
3L 28103327 3L 18285850..18286192 1617..1275 845 83 Minus
3L 28103327 3L 18285646..18285788 1821..1679 220 76.9 Minus
3L 28103327 3L 18285505..18285593 1962..1874 175 79.7 Minus
Blast to na_te.dros performed on 2019-03-16 20:48:29 has no hits.

LP07963.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:49:26 Download gff for LP07963.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4495613..4495909 1..297 99 -> Plus
chr3R 4497683..4499281 298..1896 100 -> Plus
chr3R 4499350..4499674 1897..2221 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:38:50 Download gff for LP07963.complete
Subject Subject Range Query Range Percent Splice Strand
CG8036-RC 1..1881 194..2074 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:31:29 Download gff for LP07963.complete
Subject Subject Range Query Range Percent Splice Strand
CG8036-RC 1..1881 194..2074 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:28:46 Download gff for LP07963.complete
Subject Subject Range Query Range Percent Splice Strand
CG8036-RB 1..1881 194..2074 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:15:20 Download gff for LP07963.complete
Subject Subject Range Query Range Percent Splice Strand
CG8036-RC 1..1881 194..2074 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:54:58 Download gff for LP07963.complete
Subject Subject Range Query Range Percent Splice Strand
CG8036-RB 1..1881 194..2074 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:36:18 Download gff for LP07963.complete
Subject Subject Range Query Range Percent Splice Strand
CG8036-RC 1..2221 1..2221 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:31:29 Download gff for LP07963.complete
Subject Subject Range Query Range Percent Splice Strand
CG8036-RC 1..2221 1..2221 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:46 Download gff for LP07963.complete
Subject Subject Range Query Range Percent Splice Strand
CG8036-RB 273..2493 1..2221 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:15:20 Download gff for LP07963.complete
Subject Subject Range Query Range Percent Splice Strand
CG8036-RC 1..2221 1..2221 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:58 Download gff for LP07963.complete
Subject Subject Range Query Range Percent Splice Strand
CG8036-RB 273..2493 1..2221 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:26 Download gff for LP07963.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8669632..8669928 1..297 100 -> Plus
3R 8671711..8673309 298..1896 100 -> Plus
3R 8673378..8673702 1897..2221 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:26 Download gff for LP07963.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8669632..8669928 1..297 100 -> Plus
3R 8671711..8673309 298..1896 100 -> Plus
3R 8673378..8673702 1897..2221 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:49:26 Download gff for LP07963.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8669632..8669928 1..297 100 -> Plus
3R 8671711..8673309 298..1896 100 -> Plus
3R 8673378..8673702 1897..2221 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:46 Download gff for LP07963.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4495354..4495650 1..297 100 -> Plus
arm_3R 4497433..4499031 298..1896 100 -> Plus
arm_3R 4499100..4499424 1897..2221 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:52:15 Download gff for LP07963.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8410463..8410759 1..297 100 -> Plus
3R 8412542..8414140 298..1896 100 -> Plus
3R 8414209..8414533 1897..2221 100   Plus

LP07963.hyp Sequence

Translation from 0 to 2073

> LP07963.hyp
RSRQQWSVDNSDSSYLSTTSILLSVYCKHRGVTLWLTNPKLPSFVVQHIK
NRICSDPIYIRISKMSYHKPEAKTVQDLKDLAQKLRIHSINATQASKSGH
PTSCASIAEIMSVLFFQQLRLNLKHPRDPSSDRFILSKGHAAPILYAAWA
EAGLFPIADLNNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGVAVGAGMAY
VGKNFDKADYRTYVVVGDGESAEGSIWESLHFAGHYKLDNLCVIFDVNRL
GQSEATSLQHKLDVYRDRLEAFGFNAVVVDGHDVEELSKAFHCAAITKNK
PTAIIAKTFKGRDFPNIEDLDNWHGKPLGDKAAEVVKHLEGLIVNKNVKL
TPKPVPKTGAAPDVDINNIKLSSPPAYKLGDSIATRLAYGTALAKIGQNN
LRVVALDGDTKNSTFSDKLKNLDPQRYIECFIAEQNLVGVAVGAACRRRT
VAFVSTFATFFTRAFDQIRMGAISQTNVNFVGSHCGCSIGEDGPSQMGLE
DIAMFRTIPGSTIFYPSDAVSTERAVELAANTKGVCFIRTSRPNTCVIYD
NEEPFTIGRGKVVRQKSSDEVLLIGAGITLYECLAAADQLEKNCITVRVI
DPFTVKPLDAELIIEHGKQCGGRVVVVEDHYQQGGLGEAVLSALAGERNF
VVKHLYVPTVPRSGPPSVLIDMFGISARHVVNAVNEILKD*

LP07963.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8036-PC 626 CG8036-PC 1..626 65..690 3242 100 Plus
CG8036-PB 626 CG8036-PB 1..626 65..690 3242 100 Plus
CG8036-PD 580 CG8036-PD 1..580 111..690 3009 100 Plus
CG5103-PA 623 CG5103-PA 1..622 65..689 2463 73.6 Plus

LP07963.pep Sequence

Translation from 193 to 2073

> LP07963.pep
MSYHKPEAKTVQDLKDLAQKLRIHSINATQASKSGHPTSCASIAEIMSVL
FFQQLRLNLKHPRDPSSDRFILSKGHAAPILYAAWAEAGLFPIADLNNLR
KIDSDLEGHPTPRLNFIDVGTGSLGQGVAVGAGMAYVGKNFDKADYRTYV
VVGDGESAEGSIWESLHFAGHYKLDNLCVIFDVNRLGQSEATSLQHKLDV
YRDRLEAFGFNAVVVDGHDVEELSKAFHCAAITKNKPTAIIAKTFKGRDF
PNIEDLDNWHGKPLGDKAAEVVKHLEGLIVNKNVKLTPKPVPKTGAAPDV
DINNIKLSSPPAYKLGDSIATRLAYGTALAKIGQNNLRVVALDGDTKNST
FSDKLKNLDPQRYIECFIAEQNLVGVAVGAACRRRTVAFVSTFATFFTRA
FDQIRMGAISQTNVNFVGSHCGCSIGEDGPSQMGLEDIAMFRTIPGSTIF
YPSDAVSTERAVELAANTKGVCFIRTSRPNTCVIYDNEEPFTIGRGKVVR
QKSSDEVLLIGAGITLYECLAAADQLEKNCITVRVIDPFTVKPLDAELII
EHGKQCGGRVVVVEDHYQQGGLGEAVLSALAGERNFVVKHLYVPTVPRSG
PPSVLIDMFGISARHVVNAVNEILKD*

LP07963.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18452-PA 626 GF18452-PA 1..625 1..625 3105 90.7 Plus
Dana\GF10824-PA 623 GF10824-PA 1..622 1..625 2442 71.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11729-PA 626 GG11729-PA 1..626 1..626 3318 99 Plus
Dere\GG15748-PA 623 GG15748-PA 1..622 1..625 2551 73.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17621-PA 626 GH17621-PA 1..625 1..625 2998 87.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8036-PC 626 CG8036-PC 1..626 1..626 3242 100 Plus
CG8036-PB 626 CG8036-PB 1..626 1..626 3242 100 Plus
CG8036-PD 580 CG8036-PD 1..580 47..626 3009 100 Plus
CG5103-PA 623 CG5103-PA 1..622 1..625 2463 73.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22533-PA 626 GI22533-PA 1..625 1..625 2902 84.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23966-PA 626 GL23966-PA 1..625 1..625 3047 89.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26462-PA 626 GA26462-PA 1..625 1..625 3044 89.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23748-PA 535 GM23748-PA 47..535 138..626 2598 99.2 Plus
Dsec\GM14947-PA 623 GM14947-PA 1..622 1..625 2547 73.8 Plus
Dsec\GM23748-PA 535 GM23748-PA 1..35 1..35 180 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18560-PA 626 GD18560-PA 1..626 1..626 3329 99.4 Plus
Dsim\GD12349-PA 623 GD12349-PA 1..622 1..625 2553 74.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10136-PA 626 GJ10136-PA 1..625 1..625 2990 87.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13217-PA 626 GK13217-PA 1..625 1..625 3018 89.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25892-PA 626 GE25892-PA 1..626 1..626 3307 98.6 Plus
Dyak\GE22080-PA 623 GE22080-PA 1..622 1..625 2554 74.2 Plus