Clone LP07986 Report

Search the DGRC for LP07986

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:79
Well:86
Vector:pOT2
Associated Gene/TranscriptAprt-RA
Protein status:LP07986.pep: gold
Preliminary Size:621
Sequenced Size:777

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18315 2002-01-01 Sim4 clustering to Release 2
CG18315 2002-05-18 Blastp of sequenced clone
CG18315 2003-01-01 Sim4 clustering to Release 3
Aprt 2008-04-29 Release 5.5 accounting
Aprt 2008-08-15 Release 5.9 accounting
Aprt 2008-12-18 5.12 accounting

Clone Sequence Records

LP07986.complete Sequence

777 bp (777 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119066

> LP07986.complete
TACAGTCAGAAAACCCATGTAAAAAGTCCCTTATAACTAAGTTAATAAAT
AAATAAACATAAAAGTAGAAAAATGAGCCCCTCAATCAGCGCGGAAGACA
AGCTAGACTATGTAAAGAGCAAGATTGGCGAGTATCCGAACTTCCCAAAG
GAGGGCATTCTGTTCCGTGACATATTCGGAGCCCTCACCGATCCGAAGGC
ATGTGTGTACTTGCGCGATTTGCTTGTTGATCACATCCGGGAAAGTGCTC
CCGAGGCGGAGGTCATCGTGGGACTGGACTCGCGGGGCTTCCTCTTTAAT
CTCCTCATAGCCACCGAGCTGGGCCTGGGATGTGCTCCGATTCGCAAGAA
GGGCAAGCTGGCGGGAGAAGTGGTTTCCGTGGAATACAAACTGGAGTACG
GTATTGACACCTTTGAGCTGCAAAAATCCGCCATCAAGCCCGGCCAAAAA
GTCGTTGTCGTTGACGATCTACTAGCCACAGGTGGTTCCCTGGTGGCCGC
CACTGAACTCATCGGCAAGGTGGGTGGCGTTGTCGTGGAGAGCCTGGTGG
TCATGGAACTAGTTGGACTGGAGGGTCGCAAAAGGCTGGATGGAAAAGTG
CATTCCCTCATTAAGTACTGAGAGTTAATCGAATTGTGACGAAGCCTTCC
ACACTTGCATTTACCTATTCAACTAGCAAATTTTTATAAAAACTAGACAG
ACGCATATTTTTATAACGAAATATATTTGGCTCTGATAACAGAATCGTAT
AATCTCTCAATGAAAAAAAAAAAAAAA

LP07986.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
Aprt-RA 1052 Aprt-RA 190..954 1..765 3825 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1883454..1883810 762..406 1785 100 Minus
chr3L 24539361 chr3L 1883884..1884123 406..167 1200 100 Minus
chr3L 24539361 chr3L 1884253..1884419 167..1 835 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:52:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1883889..1884248 765..406 1800 100 Minus
3L 28110227 3L 1884322..1884561 406..167 1200 100 Minus
3L 28110227 3L 1884691..1884857 167..1 835 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1883889..1884248 765..406 1800 100 Minus
3L 28103327 3L 1884322..1884561 406..167 1200 100 Minus
3L 28103327 3L 1884691..1884857 167..1 835 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:23:07 has no hits.

LP07986.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:23:53 Download gff for LP07986.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1884253..1884419 1..167 100   Minus
chr3L 1883454..1883810 406..762 100 <- Minus
chr3L 1883885..1884122 168..405 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:38:51 Download gff for LP07986.complete
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 1..549 73..621 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:42:02 Download gff for LP07986.complete
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 1..549 73..621 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:49:15 Download gff for LP07986.complete
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 1..549 73..621 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:34:08 Download gff for LP07986.complete
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 1..549 73..621 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:16:17 Download gff for LP07986.complete
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 1..549 73..621 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:16:14 Download gff for LP07986.complete
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 29..790 1..762 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:42:02 Download gff for LP07986.complete
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 29..790 1..762 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:49:15 Download gff for LP07986.complete
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 29..790 1..762 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:34:08 Download gff for LP07986.complete
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 29..790 1..762 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:16:17 Download gff for LP07986.complete
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 36..797 1..762 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:23:53 Download gff for LP07986.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1883892..1884248 406..762 100 <- Minus
3L 1884323..1884560 168..405 100 <- Minus
3L 1884691..1884857 1..167 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:23:53 Download gff for LP07986.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1883892..1884248 406..762 100 <- Minus
3L 1884323..1884560 168..405 100 <- Minus
3L 1884691..1884857 1..167 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:23:53 Download gff for LP07986.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1883892..1884248 406..762 100 <- Minus
3L 1884323..1884560 168..405 100 <- Minus
3L 1884691..1884857 1..167 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:49:15 Download gff for LP07986.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1884323..1884560 168..405 100 <- Minus
arm_3L 1884691..1884857 1..167 100   Minus
arm_3L 1883892..1884248 406..762 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:06:29 Download gff for LP07986.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1883892..1884248 406..762 100 <- Minus
3L 1884323..1884560 168..405 100 <- Minus
3L 1884691..1884857 1..167 100   Minus

LP07986.pep Sequence

Translation from 72 to 620

> LP07986.pep
MSPSISAEDKLDYVKSKIGEYPNFPKEGILFRDIFGALTDPKACVYLRDL
LVDHIRESAPEAEVIVGLDSRGFLFNLLIATELGLGCAPIRKKGKLAGEV
VSVEYKLEYGIDTFELQKSAIKPGQKVVVVDDLLATGGSLVAATELIGKV
GGVVVESLVVMELVGLEGRKRLDGKVHSLIKY*

LP07986.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24950-PA 181 GF24950-PA 1..181 1..182 738 87.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14548-PA 182 GG14548-PA 1..182 1..182 885 95.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15295-PA 181 GH15295-PA 4..181 5..182 735 79.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
Aprt-PD 182 CG18315-PD 1..182 1..182 908 100 Plus
Aprt-PC 182 CG18315-PC 1..182 1..182 908 100 Plus
Aprt-PA 182 CG18315-PA 1..182 1..182 908 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12006-PA 181 GI12006-PA 4..181 5..182 732 78.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24816-PA 181 GL24816-PA 3..181 4..182 815 87.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Aprt-PA 100 GA14884-PA 12..100 94..182 374 84.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14157-PA 182 GM14157-PA 1..182 1..182 901 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13427-PA 182 GD13427-PA 1..182 1..182 898 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13276-PA 181 GJ13276-PA 4..181 5..182 744 80.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19711-PA 181 GK19711-PA 4..181 5..182 734 77.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20903-PA 182 GE20903-PA 1..182 1..182 884 96.7 Plus

LP07986.hyp Sequence

Translation from 72 to 620

> LP07986.hyp
MSPSISAEDKLDYVKSKIGEYPNFPKEGILFRDIFGALTDPKACVYLRDL
LVDHIRESAPEAEVIVGLDSRGFLFNLLIATELGLGCAPIRKKGKLAGEV
VSVEYKLEYGIDTFELQKSAIKPGQKVVVVDDLLATGGSLVAATELIGKV
GGVVVESLVVMELVGLEGRKRLDGKVHSLIKY*

LP07986.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
Aprt-PD 182 CG18315-PD 1..182 1..182 908 100 Plus
Aprt-PC 182 CG18315-PC 1..182 1..182 908 100 Plus
Aprt-PA 182 CG18315-PA 1..182 1..182 908 100 Plus