Clone LP08070 Report

Search the DGRC for LP08070

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:80
Well:70
Vector:pOT2
Associated Gene/TranscriptAmyrel-RA
Protein status:LP08070.pep: gold
Preliminary Size:1598
Sequenced Size:1570

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8221 2001-01-01 Release 2 assignment
CG8221 2001-07-04 Blastp of sequenced clone
CG8221 2003-01-01 Sim4 clustering to Release 3
Amyrel 2008-04-29 Release 5.5 accounting
Amyrel 2008-08-15 Release 5.9 accounting
Amyrel 2008-12-18 5.12 accounting

Clone Sequence Records

LP08070.complete Sequence

1570 bp (1570 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052055

> LP08070.complete
TCATGTTCAAGTTCGCTTTGACCCTGACGCTCTGCTTGGCGGGCAGCCTT
TCGCTGGCCCAGCACAATCCCCATTGGTGGGGCAATCGCAACACCATCGT
CCACTTGTTCGAGTGGAAGTGGTCGGACATTGCCCAGGAGTGTGAGAGTT
TTCTCGGACCTCGAGGATTCGCCGGCGTTCAAGTGAGCCCCGTTAATGAG
AACATCTTATCGGCGGGTCGTCCGTGGTGGGAGCGATATCAACCCATCTC
GTACAAGCTGACCACTCGGTCTGGTAATGAGGAGGAATTTGGTGACATGG
TCCGTCGTTGCAACGATGTGGGTGTTCGTATCTATGTGGATGTGCTGTTG
AACCACATGTCCGGAGATTTTGACGGTGTGGCTGTGGGCACTGCTGGAAC
AGAGGCGGAACCCAGTAAGAAATCCTTCCCAGGAGTTCCATACACCGCAC
AGGACTTCCATCCCACCTGCGAGATTACCGACTGGAACGATCGCTTCCAG
GTGCAACAGTGCGAACTGGTTGGCCTCAAGGATCTTGACCAGAGCAGCGA
CTGGGTGAGGAGCAAGCTAATTGAGTTCCTGGATCACCTCATCGAACTGG
GTGTTGCTGGCTTCCGGGTGGATGCCGCCAAGCATATGGCATCGGAAGAT
CTAGAGTACATCTACAGCAGCCTGAGCAACCTGAACATCGATCACGGCTT
TCCTCACAACTCCCGTCCCTTCATCTTCCAGGAGGTAATTGATCACGGTC
ACGAAACCGTCTCCCGTGATGAGTACAAGGATCTGGGTGCCGTCACCGAG
TTCCGATTCTCCGAGGAGATTGGCAACGCCTTCCGTGGCAACAACGCACT
GAAATGGCTGCAGAGCTGGGGAACCGATTGGGGATTCTTGCCCTCGGGTC
AGGCCTTGACCTTTGTGGACAACCACGATAACCAGCGAGACGCGGGTGCC
GTGCTGAACTACAAGTCCCCCAGGCAGTACAAAATGGCAACCGCCTTCCA
TTTGGCCTATCCCTACGGCATCAGTCGGGTGATGAGCTCATTCGCCTTCG
ATGACCACGATACCCCGCCGCCGCAGGATGCGCAGGAGAGAATAATTTCA
CCCGAGTTCGATGCGGATGGAGCCTGTGTGAATGGCTGGATTTGCGAGCA
TCGTTGGCGTCAGATCTACGCGATGGTGGGCTTCAAGAACGCCGTTCGGG
ATACGGAGATCACCGGCTGGTGGGACAATGGAGACAACCAGATCTCCTTC
TGTCGCGGCAACAAGGGCTTCCTGGCTATCAACAACAACCTGTACGATTT
GTCGCAGGATCTGAATACCTGTCTGCCTGCCGGAACCTACTGCGATGTGA
TTTCCGGCAGCCTGATCGACGGATCCTGCACCGGCAAATCGGTCACTGTG
AACGAGAATGGCTATGGCTATATACACATCGGATCCGATGACTTCGACGG
TGTACTGGCCCTGCATGTGGATGCCAAAGTTTAAGTAAAGGTAACACAGA
AATCTGGGCTTTATTTTTGTCTCAAATTACAATAAAAACGAACGCACATA
AAAAAAAAAAAAAAAAAAAA

LP08070.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
Amyrel.d 2090 Amyrel.d 4..1554 1..1551 7755 100 Plus
Amyrel.c 1741 Amyrel.c 4..1554 1..1551 7755 100 Plus
Amyrel-RA 1595 Amyrel-RA 44..1594 1..1551 7755 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12538287..12539181 1549..655 4280 98.5 Minus
chr2R 21145070 chr2R 12539236..12539891 656..1 3235 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:52:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16651093..16651989 1551..655 4485 100 Minus
2R 25286936 2R 16652044..16652699 656..1 3280 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16652292..16653188 1551..655 4485 100 Minus
2R 25260384 2R 16653243..16653898 656..1 3280 100 Minus
2R 25260384 2R 17121112..17121250 363..225 155 74.1 Minus
2R 25260384 2R 17120183..17120252 1286..1217 140 80 Minus
Blast to na_te.dros performed on 2019-03-15 20:00:52 has no hits.

LP08070.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:01:39 Download gff for LP08070.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12538287..12539179 657..1549 98 <- Minus
chr2R 12539236..12539891 1..656 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:38:52 Download gff for LP08070.complete
Subject Subject Range Query Range Percent Splice Strand
Amyrel-RA 1..1482 3..1484 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:13:54 Download gff for LP08070.complete
Subject Subject Range Query Range Percent Splice Strand
Amyrel-RA 1..1482 3..1484 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:05:10 Download gff for LP08070.complete
Subject Subject Range Query Range Percent Splice Strand
Amyrel-RA 1..1482 3..1484 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:45:10 Download gff for LP08070.complete
Subject Subject Range Query Range Percent Splice Strand
Amyrel-RA 1..1482 3..1484 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:13:04 Download gff for LP08070.complete
Subject Subject Range Query Range Percent Splice Strand
Amyrel-RA 1..1482 3..1484 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:06:45 Download gff for LP08070.complete
Subject Subject Range Query Range Percent Splice Strand
Amyrel-RA 1..1549 1..1549 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:13:53 Download gff for LP08070.complete
Subject Subject Range Query Range Percent Splice Strand
Amyrel-RA 1..1549 1..1549 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:10 Download gff for LP08070.complete
Subject Subject Range Query Range Percent Splice Strand
Amyrel-RA 1..1549 1..1549 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:45:10 Download gff for LP08070.complete
Subject Subject Range Query Range Percent Splice Strand
Amyrel-RA 1..1549 1..1549 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:13:04 Download gff for LP08070.complete
Subject Subject Range Query Range Percent Splice Strand
Amyrel-RA 1..1549 1..1549 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:01:39 Download gff for LP08070.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16651095..16651987 657..1549 100 <- Minus
2R 16652044..16652699 1..656 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:01:39 Download gff for LP08070.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16651095..16651987 657..1549 100 <- Minus
2R 16652044..16652699 1..656 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:01:39 Download gff for LP08070.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16651095..16651987 657..1549 100 <- Minus
2R 16652044..16652699 1..656 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:10 Download gff for LP08070.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12538600..12539492 657..1549 100 <- Minus
arm_2R 12539549..12540204 1..656 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:22:57 Download gff for LP08070.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16652294..16653186 657..1549 100 <- Minus
2R 16653243..16653898 1..656 100   Minus

LP08070.pep Sequence

Translation from 2 to 1483

> LP08070.pep
MFKFALTLTLCLAGSLSLAQHNPHWWGNRNTIVHLFEWKWSDIAQECESF
LGPRGFAGVQVSPVNENILSAGRPWWERYQPISYKLTTRSGNEEEFGDMV
RRCNDVGVRIYVDVLLNHMSGDFDGVAVGTAGTEAEPSKKSFPGVPYTAQ
DFHPTCEITDWNDRFQVQQCELVGLKDLDQSSDWVRSKLIEFLDHLIELG
VAGFRVDAAKHMASEDLEYIYSSLSNLNIDHGFPHNSRPFIFQEVIDHGH
ETVSRDEYKDLGAVTEFRFSEEIGNAFRGNNALKWLQSWGTDWGFLPSGQ
ALTFVDNHDNQRDAGAVLNYKSPRQYKMATAFHLAYPYGISRVMSSFAFD
DHDTPPPQDAQERIISPEFDADGACVNGWICEHRWRQIYAMVGFKNAVRD
TEITGWWDNGDNQISFCRGNKGFLAINNNLYDLSQDLNTCLPAGTYCDVI
SGSLIDGSCTGKSVTVNENGYGYIHIGSDDFDGVLALHVDAKV*

LP08070.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Amyc6-PA 493 GF13458-PA 1..493 1..493 2437 88.6 Plus
Dana\Amy58-PA 494 GF18843-PA 2..494 4..493 1588 60.2 Plus
Dana\Amy35-PA 494 GF18844-PA 2..494 4..493 1585 60 Plus
Dana\Amy4N-PA 495 GF13835-PA 3..495 5..493 1564 60.4 Plus
Dana\Amyc1-PA 494 GF12581-PA 3..494 1..493 1555 58.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\Amyrel-PA 493 GG22255-PA 1..493 1..493 2577 95.9 Plus
Dere\Amy-p-PA 494 GG22216-PA 2..494 4..493 1571 59.8 Plus
Dere\Amy-d-PA 494 GG20663-PA 2..494 4..493 1566 59.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\Amyrel-PA 490 GH22708-PA 2..490 6..493 2119 78.7 Plus
Dgri\GH21468-PA 538 GH21468-PA 52..538 10..493 1541 58.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
Amyrel-PA 493 CG8221-PA 1..493 1..493 2697 100 Plus
Amy-p-PB 494 CG18730-PB 8..494 10..493 1582 60.5 Plus
Amy-p-PA 494 CG18730-PA 8..494 10..493 1582 60.5 Plus
Amy-d-PA 494 CG17876-PA 18..494 19..493 1579 61.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18495-PA 490 GI18495-PA 2..490 6..493 2198 81.6 Plus
Dmoj\GI19946-PA 494 GI19946-PA 17..494 22..493 1553 60.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11824-PA 448 GL11824-PA 1..448 1..493 1987 73.7 Plus
Dper\Amy4-PA 494 GL20050-PA 3..494 6..493 1578 60.3 Plus
Dper\Amy2-PA 494 GL20058-PA 3..494 6..493 1551 59.5 Plus
Dper\GL20056-PA 309 GL20056-PA 3..254 6..257 872 63.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Amyrel-PA 494 GA20907-PA 1..494 1..493 2268 82.4 Plus
Dpse\Amy2-PA 494 GA24912-PA 3..494 6..493 1580 60.3 Plus
Dpse\Amy1-PA 494 GA24265-PA 3..494 6..493 1580 60.3 Plus
Dpse\Amy3-PA 262 GA24911-PA 10..262 231..493 699 53.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\Amyrel-PA 493 GM20043-PA 1..493 1..493 2632 98.6 Plus
Dsec\Amy-d-PA 474 GM21759-PA 2..474 4..493 1474 56.8 Plus
Dsec\Amy-p-PA 485 GM20004-PA 2..485 4..493 1471 57.6 Plus
Dsec\GM23222-PA 173 GM23222-PA 2..121 4..122 422 64.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Amyrel-PA 493 GD25526-PA 1..493 1..493 2635 98.8 Plus
Dsim\Amy-d-PA 494 GD11250-PA 2..494 4..493 1576 60 Plus
Dsim\Amy-p-PA 234 GD25494-PA 2..234 4..237 753 61.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Amyrel-PA 490 GJ21358-PA 2..490 6..493 2207 81.8 Plus
Dvir\Amy-PA 494 GJ17794-PA 16..494 17..493 1567 59.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Amyrel-PA 460 GK10730-PA 1..459 2..460 2127 82.1 Plus
Dwil\GK21763-PA 494 GK21763-PA 3..494 4..493 1614 61.5 Plus
Dwil\GK21544-PA 494 GK21544-PA 3..494 4..493 1614 61.5 Plus
Dwil\GK21545-PA 286 GK21545-PA 1..286 212..493 861 59.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Amyrel-PA 493 GE14048-PA 1..493 1..493 2594 96.6 Plus
Dyak\Amy-d-PA 494 GE11648-PA 2..494 4..493 1562 59.6 Plus
Dyak\Amy-p-PA 528 GE14213-PA 2..528 4..493 1502 55.4 Plus

LP08070.hyp Sequence

Translation from 2 to 1483

> LP08070.hyp
MFKFALTLTLCLAGSLSLAQHNPHWWGNRNTIVHLFEWKWSDIAQECESF
LGPRGFAGVQVSPVNENILSAGRPWWERYQPISYKLTTRSGNEEEFGDMV
RRCNDVGVRIYVDVLLNHMSGDFDGVAVGTAGTEAEPSKKSFPGVPYTAQ
DFHPTCEITDWNDRFQVQQCELVGLKDLDQSSDWVRSKLIEFLDHLIELG
VAGFRVDAAKHMASEDLEYIYSSLSNLNIDHGFPHNSRPFIFQEVIDHGH
ETVSRDEYKDLGAVTEFRFSEEIGNAFRGNNALKWLQSWGTDWGFLPSGQ
ALTFVDNHDNQRDAGAVLNYKSPRQYKMATAFHLAYPYGISRVMSSFAFD
DHDTPPPQDAQERIISPEFDADGACVNGWICEHRWRQIYAMVGFKNAVRD
TEITGWWDNGDNQISFCRGNKGFLAINNNLYDLSQDLNTCLPAGTYCDVI
SGSLIDGSCTGKSVTVNENGYGYIHIGSDDFDGVLALHVDAKV*

LP08070.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
Amyrel-PA 493 CG8221-PA 1..493 1..493 2697 100 Plus
Amy-p-PB 494 CG18730-PB 8..494 10..493 1582 60.5 Plus
Amy-p-PA 494 CG18730-PA 8..494 10..493 1582 60.5 Plus
Amy-d-PA 494 CG17876-PA 18..494 19..493 1579 61.2 Plus