Clone LP08122 Report

Search the DGRC for LP08122

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:81
Well:22
Vector:pOT2
Associated Gene/TranscriptCG32187-RA
Protein status:LP08122.pep: gold
Sequenced Size:1358

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32187 2003-01-01 Sim4 clustering to Release 3
CG32187 2004-03-31 Blastp of sequenced clone
CG32187 2008-04-29 Release 5.5 accounting
CG32187 2008-08-15 Release 5.9 accounting
CG32187 2008-12-18 5.12 accounting

Clone Sequence Records

LP08122.complete Sequence

1358 bp (1358 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012484

> LP08122.complete
GGGGTTGAAAAGCCGGGCGACAGGACGCAAAAAATCATAAAACGAGGCAA
AACTTCGGAGATTGCAAACGTCATGGAGGAACGCGCTGTGCTCGCTAACA
TTGCGTCCATAATCACCAAGGACTTGCTGATTGATCAGCCGTCCGTGGAC
ATCAATTCAGGCATTTATCCGCTGTTGACCTTCGACGAGGACGACGATGA
GGCAGAGATTTTCGCTTTGATGCAGCGAAAACGGGCGTTGGCTTCCGGCC
GGAAGCGCAGGAACTCCCAAGAACCGGAGGACCGGAAACAGGACCTAAAG
ATGCCCAAGCTGGAGTGGCACCACCCGGAACTCAACCTACTGCACCGCTA
CACGGATGCCCAGTTCGAGTCCTACCTTCACATGCGCAAGCTAACATTCC
TGAAAATCCAGCAAGCCCTAGAGAAAACTTTATGTGGAATCGCGTTGCCA
GGCTATCCCAGTCCGCCGGCGCAGACCATGGTGTCCTTGGCCCTGTGGAA
GCTGTCCACCGACGAGCACTTCGAGGAGATCGCCCGCAAGTTTCGACTGC
CCTGGGCTCTCTGCCAGCAGGTGGTGCGGGCATTCTGGCACTGCATCTCC
GATAATTACGAGAGCTTTATTAAGTGGCCAAACTCACTGGCGGCCCAGCG
GAGCACCCTGCAGGGATATCAGAGACTGGACAAACTGCGCTGCTTTCGGG
AACTGTTTGGCATAATAACGCTGAGGCGACTGGACGTATTTCTGGAGTCG
GAGCACGCCGATGTGCCTGTGGTGCTCCAGTTAATATGCAATGCCGAGCG
AAAGATCGTCGACTGCTACGTTGAGCTGGCCATGGAGTACAGCTTCGAGG
ACTCACCCATTGGCCAGACATTGGCCCTGAATCCGAGGACCATGCCGGCG
GGCAGCTATCTCATCGGAAACGATGTGTTTCCTCTCAAATCCTACCTGAT
GCGGCCCATTGAGGCCGAGTGCTTCCGCAAGGATGCGATGTTCAACGAAA
TGCTGCGTCCCGCCTTCGAGCTGGCGGAACAGGTACTGGACACCTTGGCA
CGACGTTTCAATACCCTGTACGCTTTGGAGGCCCGGGATTTGAACGAGGT
GCGCCTCATTGTGGAGAGCATCTGTGCGATGCACAACATCTGCGAAGAGT
ACGAGGACGATGGACTGGAGGATCCTGGGCATAGGTCCTTTAGTTGGGGC
GGGGTGGCGGAGGGTGTCAGGGGCAGTGAGAAGGACTCGAAGGGACTGCA
GCGAAGGGTTGAGCTCCTTGACGAACTGGTGGCCATCGAGCCTGGCGAAT
AAAGTAATGTTTCGCTCAAAATAAATAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

LP08122.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG32187-RA 1377 CG32187-RA 36..1363 1..1328 6640 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17794503..17795427 1326..402 4520 99.2 Minus
chr3L 24539361 chr3L 17795551..17795952 402..1 2010 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:52:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17804914..17805840 1328..402 4635 100 Minus
3L 28110227 3L 17805964..17806365 402..1 2010 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17798014..17798940 1328..402 4635 100 Minus
3L 28103327 3L 17799064..17799465 402..1 2010 100 Minus
Blast to na_te.dros performed 2019-03-16 18:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 3517..3579 1037..972 115 68.2 Minus

LP08122.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:56:48 Download gff for LP08122.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17794513..17795426 403..1316 99 <- Minus
chr3L 17795551..17795952 1..402 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:38:55 Download gff for LP08122.complete
Subject Subject Range Query Range Percent Splice Strand
CG32187-RA 1..1230 73..1302 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:38:15 Download gff for LP08122.complete
Subject Subject Range Query Range Percent Splice Strand
CG32187-RA 1..1230 73..1302 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:28:54 Download gff for LP08122.complete
Subject Subject Range Query Range Percent Splice Strand
CG32187-RA 1..1230 73..1302 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:22:01 Download gff for LP08122.complete
Subject Subject Range Query Range Percent Splice Strand
CG32187-RA 1..1230 73..1302 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:13 Download gff for LP08122.complete
Subject Subject Range Query Range Percent Splice Strand
CG32187-RA 1..1230 73..1302 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:46:14 Download gff for LP08122.complete
Subject Subject Range Query Range Percent Splice Strand
CG32187-RA 1..1302 1..1302 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:38:14 Download gff for LP08122.complete
Subject Subject Range Query Range Percent Splice Strand
CG32187-RA 1..1326 1..1326 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:54 Download gff for LP08122.complete
Subject Subject Range Query Range Percent Splice Strand
CG32187-RA 1..1326 1..1326 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:22:01 Download gff for LP08122.complete
Subject Subject Range Query Range Percent Splice Strand
CG32187-RA 1..1302 1..1302 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:13 Download gff for LP08122.complete
Subject Subject Range Query Range Percent Splice Strand
CG32187-RA 1..1326 1..1326 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:56:48 Download gff for LP08122.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17804916..17805839 403..1326 100 <- Minus
3L 17805964..17806365 1..402 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:56:48 Download gff for LP08122.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17804916..17805839 403..1326 100 <- Minus
3L 17805964..17806365 1..402 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:56:48 Download gff for LP08122.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17804916..17805839 403..1326 100 <- Minus
3L 17805964..17806365 1..402 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:54 Download gff for LP08122.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17798016..17798939 403..1326 100 <- Minus
arm_3L 17799064..17799465 1..402 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:59:29 Download gff for LP08122.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17798016..17798939 403..1326 100 <- Minus
3L 17799064..17799465 1..402 100   Minus

LP08122.hyp Sequence

Translation from 0 to 1301

> LP08122.hyp
GVEKPGDRTQKIIKRGKTSEIANVMEERAVLANIASIITKDLLIDQPSVD
INSGIYPLLTFDEDDDEAEIFALMQRKRALASGRKRRNSQEPEDRKQDLK
MPKLEWHHPELNLLHRYTDAQFESYLHMRKLTFLKIQQALEKTLCGIALP
GYPSPPAQTMVSLALWKLSTDEHFEEIARKFRLPWALCQQVVRAFWHCIS
DNYESFIKWPNSLAAQRSTLQGYQRLDKLRCFRELFGIITLRRLDVFLES
EHADVPVVLQLICNAERKIVDCYVELAMEYSFEDSPIGQTLALNPRTMPA
GSYLIGNDVFPLKSYLMRPIEAECFRKDAMFNEMLRPAFELAEQVLDTLA
RRFNTLYALEARDLNEVRLIVESICAMHNICEEYEDDGLEDPGHRSFSWG
GVAEGVRGSEKDSKGLQRRVELLDELVAIEPGE*

LP08122.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG32187-PA 409 CG32187-PA 1..409 25..433 2133 100 Plus

LP08122.pep Sequence

Translation from 72 to 1301

> LP08122.pep
MEERAVLANIASIITKDLLIDQPSVDINSGIYPLLTFDEDDDEAEIFALM
QRKRALASGRKRRNSQEPEDRKQDLKMPKLEWHHPELNLLHRYTDAQFES
YLHMRKLTFLKIQQALEKTLCGIALPGYPSPPAQTMVSLALWKLSTDEHF
EEIARKFRLPWALCQQVVRAFWHCISDNYESFIKWPNSLAAQRSTLQGYQ
RLDKLRCFRELFGIITLRRLDVFLESEHADVPVVLQLICNAERKIVDCYV
ELAMEYSFEDSPIGQTLALNPRTMPAGSYLIGNDVFPLKSYLMRPIEAEC
FRKDAMFNEMLRPAFELAEQVLDTLARRFNTLYALEARDLNEVRLIVESI
CAMHNICEEYEDDGLEDPGHRSFSWGGVAEGVRGSEKDSKGLQRRVELLD
ELVAIEPGE*

LP08122.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25238-PA 411 GF25238-PA 1..411 1..409 1739 81.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15781-PA 409 GG15781-PA 1..409 1..409 2083 95.4 Plus
Dere\GG19814-PA 140 GG19814-PA 1..110 1..110 541 94.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14470-PA 414 GH14470-PA 1..414 1..409 1476 69.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG32187-PA 409 CG32187-PA 1..409 1..409 2133 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13616-PA 415 GI13616-PA 1..415 1..409 1448 69.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22751-PA 415 GL22751-PA 1..415 1..407 1630 73.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16744-PA 415 GA16744-PA 1..415 1..407 1624 73.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24307-PA 409 GM24307-PA 1..409 1..409 2104 95.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12375-PA 409 GD12375-PA 1..409 1..409 2117 95.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13953-PA 421 GJ13953-PA 1..421 1..409 1490 69.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10437-PA 423 GK10437-PA 1..423 1..409 1520 68.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22118-PA 409 GE22118-PA 1..409 1..409 2071 94.6 Plus