BDGP Sequence Production Resources |
Search the DGRC for LP08340
Library: | LP |
Tissue Source: | Drosophila melanogaster larval-early pupal |
Created by: | Ling Hong |
Date Registered: | 1998-06-11 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 83 |
Well: | 40 |
Vector: | pOT2 |
Associated Gene/Transcript | Tsf1-RA |
Protein status: | LP08340.pep: gold |
Sequenced Size: | 2013 |
Gene | Date | Evidence |
---|---|---|
CG6186 | 2007-09-25 | DGC5 pick |
Tsf1 | 2008-04-29 | Release 5.5 accounting |
Tsf1 | 2008-04-29 | Picked prior to 5.5 |
Tsf1 | 2008-08-15 | Release 5.9 accounting |
Tsf1 | 2008-12-18 | 5.12 accounting |
2013 bp assembled on 2007-12-04
GenBank Submission: BT031334
> LP08340.complete CTCAGATGATGTCGCCGCATAAGACCCACACCTGGCTGCCACTGGCGGTG GCCGCCCTCCTGCTGATCCTTGGACCGCAGTCCTCCCTGGCGGAGGAACC CATTTATCGCCTGTGTGTGCCGCAAATCTATTTGGCCGAGTGCCAGCAGC TGCTGGCCGATCCCTCGGAGGCGGGCATCCGCATGGAGTGCGTGGCTGGA CGGGATCGAGTGGACTGCCTGGAGCTGATCGAGCAGCGCAAGGCCGATGT GCTGGCCACCGAGCCGGAGGACATGTACATCGCCTATCATCGCAAGAACG AGGACTATCGCGTGATCTCTGAGATCCGAACGCAGCAGGACAAGGATGCC GCCTTCCGTTACGAGGGCATTATCCTGGTGAAGAAGGACTCCCCCATTCG CACCCTGCAGCAGCTGCGTGGCGCCAAGTCCTGCCACACTGGCTTCGGCC GCAACGTCGGCTACAAGATCCCCATCACCAAGCTGAAGAACACGCACGTC CTGAAGGTGTCCGCCGATCCGCAGATCTCCGCTACGGAGCGCGAACTGAA GTCGCTGTCCGAGTTCTTCACGCAGTCGTGCCTGGTGGGCACCTACTCCA CGCATCCGGAAACGGATCGCCTGCTGAAGAAGAAGTACGCCAATCTGTGC GCTCTGTGCGAGAAGCCGGAGCAGTGCAACTATCCGGACAAGTTCAGTGG CTATGATGGCGCCATACGCTGCCTGGACAAGGGTCAGGGCGAGGTGGCCT TCTCCAAGGTGCAGTACATCAAAAAGTACTTTGGTCTGCCGGGTGCCGGC CCAGATGCGCCGCCAGCGGAGGGCAATCCGGAGAATTTCGAATATCTGTG CGAGGATGGCACCCGGCGCCCGGTCACCGGACCCGCCTGCTCCTGGGCCC AGCGCCCCTGGAGCGGCTACATCTCCAACGAGCAGGCCGTTCACAACTCG GAGCAGCTGCACCAATTGCAGTCGCGTCTGGAGCGCTTCTTCGCCAATGG ACTGCAGGCGCAGAACAAGGACGCCGCCGCCCATCTGCTCATCCAGCCGA ATGCCGTGTACCACAGCAAGGATGCTGCCATCGATCCCAAGGTCTATTTG GAGCGTGCCGGCTACAAGGATGTGATCGAGCGTGATGGCAGTGCCATCAG GAAGATCCGCTTGTGCGCCCAGAACGACGACGAGTTCGCCAAATGCCAGG CGCTGCACCAGGCTGCCTACGCCCGCGACGCTCGTCCGGAACTCGAGTGC GTTCAGTCCACCGATTGTGTGGTGGCTCTGACCAAGAAGGAGGCGGATTT GACCATTGTTCGCGCAACTGGCTACGCGGATGCCCGTAGCAACCAGCTGC AGCCAATCGTCTACGAGCAGAGGGCTCAGGATGATGTCCTTGTGGCGGTC GCAGCACCCGGCGTTACACGGGAGGCTCTCCAGAAGGCCAGCATCAAATT CAATGAGAATTGCGAACGATCCCGTGCTGCTGCCGCCTTGTTGAACAAGC GACGTGGCCTGGACGCTTGTCGTGTCTCATCCAGCGACGATGGAGAGGTG CAGATCGTGCCCGCCTCCGAGCTGGAGAAGCACAAGGACGCGCAGCTGGT GTGCCCCAGTCTGGAGCGGCGACCGGTCACCGACTTCCGTGACTGCAACG TGGACGTACAGCTGCCCCGTGCCATCTTCATCCGATCGGACACCACCAGC GTGGAGCAGGAGACAGTGAAGCATCTGTTCTCGCTGATCTCGGACAAGTT TGGTGCCCGCGGCAAGCTGGTGGATGTTTTCGCTCTGTTCGGCGAATTCC AGAAGGGCAAGAAGAATGTGTATTTCAACGACAAAGCCGTTCAGCTCACC ACGGAGCTCAAAAACGAAATCCAGAACGAGCAGATCTACACAGATCTCCA GTGCAATGCTAACAAGATTGCCAAGCAGTGATCACATTTTATACTACTAG ATCCCACTATCTGCATCAATAAAATTTAATTCGAATATAAACAGAAAAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tsf1-RA | 2239 | Tsf1-RA | 128..2122 | 1..1995 | 9975 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 18277771..18278867 | 348..1444 | 5440 | 99.7 | Plus |
chrX | 22417052 | chrX | 18278926..18279315 | 1441..1830 | 1935 | 99.7 | Plus |
chrX | 22417052 | chrX | 18277318..18277560 | 106..348 | 1215 | 100 | Plus |
chrX | 22417052 | chrX | 18279378..18279542 | 1830..1994 | 825 | 100 | Plus |
chrX | 22417052 | chrX | 18277138..18277242 | 1..105 | 525 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 18388573..18389669 | 348..1444 | 5485 | 100 | Plus |
X | 23542271 | X | 18389728..18390117 | 1441..1830 | 1935 | 99.7 | Plus |
X | 23542271 | X | 18388124..18388366 | 106..348 | 1215 | 100 | Plus |
X | 23542271 | X | 18390180..18390345 | 1830..1995 | 830 | 100 | Plus |
X | 23542271 | X | 18387944..18388048 | 1..105 | 525 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 18396671..18397767 | 348..1444 | 5485 | 100 | Plus |
X | 23527363 | X | 18397826..18398215 | 1441..1830 | 1935 | 99.7 | Plus |
X | 23527363 | X | 18396222..18396464 | 106..348 | 1215 | 100 | Plus |
X | 23527363 | X | 18398278..18398443 | 1830..1995 | 830 | 100 | Plus |
X | 23527363 | X | 18396042..18396146 | 1..105 | 525 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 18279378..18279542 | 1830..1994 | 100 | Plus | |
chrX | 18277138..18277242 | 1..105 | 100 | -> | Plus |
chrX | 18277318..18277560 | 106..348 | 100 | -> | Plus |
chrX | 18277772..18278867 | 349..1444 | 99 | -> | Plus |
chrX | 18278930..18279314 | 1445..1829 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsf1-RA | 1..1926 | 6..1931 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsf1-RA | 1..1926 | 6..1931 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsf1-RA | 1..1926 | 6..1931 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsf1-RA | 1..1926 | 6..1931 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsf1-RA | 1..1926 | 6..1931 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsf1-RA | 13..2006 | 1..1994 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsf1-RA | 13..2006 | 1..1994 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsf1-RA | 24..2017 | 1..1994 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsf1-RA | 13..2006 | 1..1994 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsf1-RA | 24..2017 | 1..1994 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18387944..18388048 | 1..105 | 100 | -> | Plus |
X | 18388124..18388366 | 106..348 | 100 | -> | Plus |
X | 18388574..18389669 | 349..1444 | 100 | -> | Plus |
X | 18389732..18390116 | 1445..1829 | 100 | -> | Plus |
X | 18390180..18390344 | 1830..1994 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18387944..18388048 | 1..105 | 100 | -> | Plus |
X | 18388124..18388366 | 106..348 | 100 | -> | Plus |
X | 18388574..18389669 | 349..1444 | 100 | -> | Plus |
X | 18389732..18390116 | 1445..1829 | 100 | -> | Plus |
X | 18390180..18390344 | 1830..1994 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18387944..18388048 | 1..105 | 100 | -> | Plus |
X | 18388124..18388366 | 106..348 | 100 | -> | Plus |
X | 18388574..18389669 | 349..1444 | 100 | -> | Plus |
X | 18389732..18390116 | 1445..1829 | 100 | -> | Plus |
X | 18390180..18390344 | 1830..1994 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 18282157..18282399 | 106..348 | 100 | -> | Plus |
arm_X | 18281977..18282081 | 1..105 | 100 | -> | Plus |
arm_X | 18282607..18283702 | 349..1444 | 100 | -> | Plus |
arm_X | 18283765..18284149 | 1445..1829 | 100 | -> | Plus |
arm_X | 18284213..18284377 | 1830..1994 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18396222..18396464 | 106..348 | 100 | -> | Plus |
X | 18396672..18397767 | 349..1444 | 100 | -> | Plus |
X | 18397830..18398214 | 1445..1829 | 100 | -> | Plus |
X | 18398278..18398442 | 1830..1994 | 100 | Plus | |
X | 18396042..18396146 | 1..105 | 100 | -> | Plus |
Translation from 2 to 1930
> LP08340.hyp QMMSPHKTHTWLPLAVAALLLILGPQSSLAEEPIYRLCVPQIYLAECQQL LADPSEAGIRMECVAGRDRVDCLELIEQRKADVLATEPEDMYIAYHRKNE DYRVISEIRTQQDKDAAFRYEGIILVKKDSPIRTLQQLRGAKSCHTGFGR NVGYKIPITKLKNTHVLKVSADPQISATERELKSLSEFFTQSCLVGTYST HPETDRLLKKKYANLCALCEKPEQCNYPDKFSGYDGAIRCLDKGQGEVAF SKVQYIKKYFGLPGAGPDAPPAEGNPENFEYLCEDGTRRPVTGPACSWAQ RPWSGYISNEQAVHNSEQLHQLQSRLERFFANGLQAQNKDAAAHLLIQPN AVYHSKDAAIDPKVYLERAGYKDVIERDGSAIRKIRLCAQNDDEFAKCQA LHQAAYARDARPELECVQSTDCVVALTKKEADLTIVRATGYADARSNQLQ PIVYEQRAQDDVLVAVAAPGVTREALQKASIKFNENCERSRAAAALLNKR RGLDACRVSSSDDGEVQIVPASELEKHKDAQLVCPSLERRPVTDFRDCNV DVQLPRAIFIRSDTTSVEQETVKHLFSLISDKFGARGKLVDVFALFGEFQ KGKKNVYFNDKAVQLTTELKNEIQNEQIYTDLQCNANKIAKQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tsf1-PC | 641 | CG6186-PC | 1..641 | 2..642 | 3336 | 100 | Plus |
Tsf1-PA | 641 | CG6186-PA | 1..641 | 2..642 | 3336 | 100 | Plus |
Tsf3-PA | 714 | CG3666-PA | 54..444 | 56..455 | 450 | 28.1 | Plus |
Tsf2-PA | 819 | CG10620-PA | 62..325 | 56..333 | 196 | 22 | Plus |
Tsf2-PA | 819 | CG10620-PA | 481..695 | 63..291 | 195 | 25.7 | Plus |
Translation from 5 to 1930
> LP08340.pep MMSPHKTHTWLPLAVAALLLILGPQSSLAEEPIYRLCVPQIYLAECQQLL ADPSEAGIRMECVAGRDRVDCLELIEQRKADVLATEPEDMYIAYHRKNED YRVISEIRTQQDKDAAFRYEGIILVKKDSPIRTLQQLRGAKSCHTGFGRN VGYKIPITKLKNTHVLKVSADPQISATERELKSLSEFFTQSCLVGTYSTH PETDRLLKKKYANLCALCEKPEQCNYPDKFSGYDGAIRCLDKGQGEVAFS KVQYIKKYFGLPGAGPDAPPAEGNPENFEYLCEDGTRRPVTGPACSWAQR PWSGYISNEQAVHNSEQLHQLQSRLERFFANGLQAQNKDAAAHLLIQPNA VYHSKDAAIDPKVYLERAGYKDVIERDGSAIRKIRLCAQNDDEFAKCQAL HQAAYARDARPELECVQSTDCVVALTKKEADLTIVRATGYADARSNQLQP IVYEQRAQDDVLVAVAAPGVTREALQKASIKFNENCERSRAAAALLNKRR GLDACRVSSSDDGEVQIVPASELEKHKDAQLVCPSLERRPVTDFRDCNVD VQLPRAIFIRSDTTSVEQETVKHLFSLISDKFGARGKLVDVFALFGEFQK GKKNVYFNDKAVQLTTELKNEIQNEQIYTDLQCNANKIAKQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22435-PA | 635 | GF22435-PA | 25..634 | 29..640 | 2601 | 78.1 | Plus |
Dana\GF12273-PA | 715 | GF12273-PA | 54..650 | 55..609 | 447 | 25.1 | Plus |
Dana\GF25118-PA | 831 | GF25118-PA | 62..338 | 55..345 | 221 | 24.5 | Plus |
Dana\GF25118-PA | 831 | GF25118-PA | 493..707 | 62..290 | 187 | 25.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19163-PA | 641 | GG19163-PA | 1..641 | 1..641 | 3212 | 94.9 | Plus |
Dere\GG20582-PA | 714 | GG20582-PA | 59..457 | 60..466 | 448 | 28.2 | Plus |
Dere\GG13814-PA | 828 | GG13814-PA | 490..704 | 62..290 | 198 | 26.6 | Plus |
Dere\GG13814-PA | 828 | GG13814-PA | 62..325 | 55..332 | 194 | 22.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12424-PA | 637 | GH12424-PA | 5..636 | 7..640 | 2665 | 77.3 | Plus |
Dgri\GH20842-PA | 721 | GH20842-PA | 54..664 | 55..621 | 449 | 25.3 | Plus |
Dgri\GH16841-PA | 844 | GH16841-PA | 65..326 | 58..334 | 231 | 23.5 | Plus |
Dgri\GH16841-PA | 844 | GH16841-PA | 504..803 | 62..395 | 208 | 24.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tsf1-PC | 641 | CG6186-PC | 1..641 | 1..641 | 3336 | 100 | Plus |
Tsf1-PA | 641 | CG6186-PA | 1..641 | 1..641 | 3336 | 100 | Plus |
Tsf3-PA | 714 | CG3666-PA | 54..444 | 55..454 | 450 | 28.1 | Plus |
Tsf2-PA | 819 | CG10620-PA | 62..325 | 55..332 | 196 | 22 | Plus |
Tsf2-PA | 819 | CG10620-PA | 481..695 | 62..290 | 195 | 25.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15012-PA | 638 | GI15012-PA | 5..638 | 7..641 | 2614 | 76.2 | Plus |
Dmoj\GI20947-PA | 712 | GI20947-PA | 3..454 | 12..466 | 415 | 27.6 | Plus |
Dmoj\GI13060-PA | 851 | GI13060-PA | 72..335 | 58..336 | 235 | 23.7 | Plus |
Dmoj\GI13060-PA | 851 | GI13060-PA | 511..846 | 62..441 | 208 | 23.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26971-PA | 636 | GL26971-PA | 1..636 | 2..641 | 2735 | 79.5 | Plus |
Dper\GL17670-PA | 714 | GL17670-PA | 53..443 | 55..454 | 419 | 27.3 | Plus |
Dper\GL24940-PA | 369 | GL24940-PA | 62..327 | 55..334 | 220 | 24.7 | Plus |
Dper\GL24941-PA | 440 | GL24941-PA | 102..396 | 62..390 | 194 | 22.9 | Plus |
Dper\GL25990-PA | 304 | GL25990-PA | 32..285 | 386..634 | 173 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22329-PA | 640 | GA22329-PA | 1..640 | 2..641 | 2685 | 79.7 | Plus |
Dpse\GA17600-PA | 714 | GA17600-PA | 53..443 | 55..454 | 423 | 27.7 | Plus |
Dpse\GA10442-PA | 836 | GA10442-PA | 62..327 | 55..334 | 220 | 24.7 | Plus |
Dpse\GA10442-PA | 836 | GA10442-PA | 498..792 | 62..390 | 195 | 22.9 | Plus |
Dpse\GA25221-PA | 304 | GA25221-PA | 32..285 | 386..634 | 175 | 24.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22896-PA | 641 | GM22896-PA | 1..641 | 1..641 | 3358 | 97.5 | Plus |
Dsec\GM21673-PA | 714 | GM21673-PA | 54..457 | 55..466 | 470 | 28.8 | Plus |
Dsec\GM24642-PA | 819 | GM24642-PA | 481..695 | 62..290 | 198 | 26.8 | Plus |
Dsec\GM24642-PA | 819 | GM24642-PA | 62..325 | 55..332 | 197 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24854-PA | 195 | GD24854-PA | 1..193 | 1..193 | 1019 | 99 | Plus |
Dsim\GD11174-PA | 319 | GD11174-PA | 54..319 | 55..327 | 420 | 32 | Plus |
Dsim\GD12707-PA | 819 | GD12707-PA | 481..695 | 62..290 | 196 | 26.2 | Plus |
Dsim\GD12707-PA | 819 | GD12707-PA | 62..325 | 55..332 | 195 | 23 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15366-PA | 638 | GJ15366-PA | 27..638 | 29..641 | 2606 | 78.3 | Plus |
Dvir\GJ20669-PA | 713 | GJ20669-PA | 5..444 | 11..454 | 431 | 27.7 | Plus |
Dvir\GJ13808-PA | 819 | GJ13808-PA | 62..330 | 55..338 | 227 | 23.3 | Plus |
Dvir\GJ13808-PA | 819 | GJ13808-PA | 479..777 | 62..394 | 201 | 24.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25660-PA | 633 | GK25660-PA | 4..633 | 8..641 | 2781 | 80.6 | Plus |
Dwil\GK20628-PA | 714 | GK20628-PA | 55..444 | 60..458 | 434 | 28.2 | Plus |
Dwil\GK20971-PA | 842 | GK20971-PA | 501..712 | 62..287 | 190 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Tsf1-PA | 641 | GE17726-PA | 1..641 | 1..641 | 3226 | 95.5 | Plus |
Dyak\GE11768-PA | 714 | GE11768-PA | 59..457 | 60..466 | 450 | 28.4 | Plus |
Dyak\GE20108-PA | 819 | GE20108-PA | 62..327 | 55..334 | 202 | 22.8 | Plus |
Dyak\GE20108-PA | 819 | GE20108-PA | 481..725 | 62..319 | 201 | 25.1 | Plus |