Clone LP08340 Report

Search the DGRC for LP08340

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:83
Well:40
Vector:pOT2
Associated Gene/TranscriptTsf1-RA
Protein status:LP08340.pep: gold
Sequenced Size:2013

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6186 2007-09-25 DGC5 pick
Tsf1 2008-04-29 Release 5.5 accounting
Tsf1 2008-04-29 Picked prior to 5.5
Tsf1 2008-08-15 Release 5.9 accounting
Tsf1 2008-12-18 5.12 accounting

Clone Sequence Records

LP08340.complete Sequence

2013 bp assembled on 2007-12-04

GenBank Submission: BT031334

> LP08340.complete
CTCAGATGATGTCGCCGCATAAGACCCACACCTGGCTGCCACTGGCGGTG
GCCGCCCTCCTGCTGATCCTTGGACCGCAGTCCTCCCTGGCGGAGGAACC
CATTTATCGCCTGTGTGTGCCGCAAATCTATTTGGCCGAGTGCCAGCAGC
TGCTGGCCGATCCCTCGGAGGCGGGCATCCGCATGGAGTGCGTGGCTGGA
CGGGATCGAGTGGACTGCCTGGAGCTGATCGAGCAGCGCAAGGCCGATGT
GCTGGCCACCGAGCCGGAGGACATGTACATCGCCTATCATCGCAAGAACG
AGGACTATCGCGTGATCTCTGAGATCCGAACGCAGCAGGACAAGGATGCC
GCCTTCCGTTACGAGGGCATTATCCTGGTGAAGAAGGACTCCCCCATTCG
CACCCTGCAGCAGCTGCGTGGCGCCAAGTCCTGCCACACTGGCTTCGGCC
GCAACGTCGGCTACAAGATCCCCATCACCAAGCTGAAGAACACGCACGTC
CTGAAGGTGTCCGCCGATCCGCAGATCTCCGCTACGGAGCGCGAACTGAA
GTCGCTGTCCGAGTTCTTCACGCAGTCGTGCCTGGTGGGCACCTACTCCA
CGCATCCGGAAACGGATCGCCTGCTGAAGAAGAAGTACGCCAATCTGTGC
GCTCTGTGCGAGAAGCCGGAGCAGTGCAACTATCCGGACAAGTTCAGTGG
CTATGATGGCGCCATACGCTGCCTGGACAAGGGTCAGGGCGAGGTGGCCT
TCTCCAAGGTGCAGTACATCAAAAAGTACTTTGGTCTGCCGGGTGCCGGC
CCAGATGCGCCGCCAGCGGAGGGCAATCCGGAGAATTTCGAATATCTGTG
CGAGGATGGCACCCGGCGCCCGGTCACCGGACCCGCCTGCTCCTGGGCCC
AGCGCCCCTGGAGCGGCTACATCTCCAACGAGCAGGCCGTTCACAACTCG
GAGCAGCTGCACCAATTGCAGTCGCGTCTGGAGCGCTTCTTCGCCAATGG
ACTGCAGGCGCAGAACAAGGACGCCGCCGCCCATCTGCTCATCCAGCCGA
ATGCCGTGTACCACAGCAAGGATGCTGCCATCGATCCCAAGGTCTATTTG
GAGCGTGCCGGCTACAAGGATGTGATCGAGCGTGATGGCAGTGCCATCAG
GAAGATCCGCTTGTGCGCCCAGAACGACGACGAGTTCGCCAAATGCCAGG
CGCTGCACCAGGCTGCCTACGCCCGCGACGCTCGTCCGGAACTCGAGTGC
GTTCAGTCCACCGATTGTGTGGTGGCTCTGACCAAGAAGGAGGCGGATTT
GACCATTGTTCGCGCAACTGGCTACGCGGATGCCCGTAGCAACCAGCTGC
AGCCAATCGTCTACGAGCAGAGGGCTCAGGATGATGTCCTTGTGGCGGTC
GCAGCACCCGGCGTTACACGGGAGGCTCTCCAGAAGGCCAGCATCAAATT
CAATGAGAATTGCGAACGATCCCGTGCTGCTGCCGCCTTGTTGAACAAGC
GACGTGGCCTGGACGCTTGTCGTGTCTCATCCAGCGACGATGGAGAGGTG
CAGATCGTGCCCGCCTCCGAGCTGGAGAAGCACAAGGACGCGCAGCTGGT
GTGCCCCAGTCTGGAGCGGCGACCGGTCACCGACTTCCGTGACTGCAACG
TGGACGTACAGCTGCCCCGTGCCATCTTCATCCGATCGGACACCACCAGC
GTGGAGCAGGAGACAGTGAAGCATCTGTTCTCGCTGATCTCGGACAAGTT
TGGTGCCCGCGGCAAGCTGGTGGATGTTTTCGCTCTGTTCGGCGAATTCC
AGAAGGGCAAGAAGAATGTGTATTTCAACGACAAAGCCGTTCAGCTCACC
ACGGAGCTCAAAAACGAAATCCAGAACGAGCAGATCTACACAGATCTCCA
GTGCAATGCTAACAAGATTGCCAAGCAGTGATCACATTTTATACTACTAG
ATCCCACTATCTGCATCAATAAAATTTAATTCGAATATAAACAGAAAAAA
AAAAAAAAAAAAA

LP08340.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
Tsf1-RA 2239 Tsf1-RA 128..2122 1..1995 9975 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 18277771..18278867 348..1444 5440 99.7 Plus
chrX 22417052 chrX 18278926..18279315 1441..1830 1935 99.7 Plus
chrX 22417052 chrX 18277318..18277560 106..348 1215 100 Plus
chrX 22417052 chrX 18279378..18279542 1830..1994 825 100 Plus
chrX 22417052 chrX 18277138..18277242 1..105 525 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:52:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18388573..18389669 348..1444 5485 100 Plus
X 23542271 X 18389728..18390117 1441..1830 1935 99.7 Plus
X 23542271 X 18388124..18388366 106..348 1215 100 Plus
X 23542271 X 18390180..18390345 1830..1995 830 100 Plus
X 23542271 X 18387944..18388048 1..105 525 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18396671..18397767 348..1444 5485 100 Plus
X 23527363 X 18397826..18398215 1441..1830 1935 99.7 Plus
X 23527363 X 18396222..18396464 106..348 1215 100 Plus
X 23527363 X 18398278..18398443 1830..1995 830 100 Plus
X 23527363 X 18396042..18396146 1..105 525 100 Plus
Blast to na_te.dros performed on 2019-03-16 13:12:15 has no hits.

LP08340.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:13:12 Download gff for LP08340.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18279378..18279542 1830..1994 100   Plus
chrX 18277138..18277242 1..105 100 -> Plus
chrX 18277318..18277560 106..348 100 -> Plus
chrX 18277772..18278867 349..1444 99 -> Plus
chrX 18278930..18279314 1445..1829 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:38:58 Download gff for LP08340.complete
Subject Subject Range Query Range Percent Splice Strand
Tsf1-RA 1..1926 6..1931 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:05:30 Download gff for LP08340.complete
Subject Subject Range Query Range Percent Splice Strand
Tsf1-RA 1..1926 6..1931 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:54:04 Download gff for LP08340.complete
Subject Subject Range Query Range Percent Splice Strand
Tsf1-RA 1..1926 6..1931 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:51:49 Download gff for LP08340.complete
Subject Subject Range Query Range Percent Splice Strand
Tsf1-RA 1..1926 6..1931 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:11:00 Download gff for LP08340.complete
Subject Subject Range Query Range Percent Splice Strand
Tsf1-RA 1..1926 6..1931 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:59:34 Download gff for LP08340.complete
Subject Subject Range Query Range Percent Splice Strand
Tsf1-RA 13..2006 1..1994 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:05:30 Download gff for LP08340.complete
Subject Subject Range Query Range Percent Splice Strand
Tsf1-RA 13..2006 1..1994 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:54:04 Download gff for LP08340.complete
Subject Subject Range Query Range Percent Splice Strand
Tsf1-RA 24..2017 1..1994 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:51:49 Download gff for LP08340.complete
Subject Subject Range Query Range Percent Splice Strand
Tsf1-RA 13..2006 1..1994 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:00 Download gff for LP08340.complete
Subject Subject Range Query Range Percent Splice Strand
Tsf1-RA 24..2017 1..1994 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:13:12 Download gff for LP08340.complete
Subject Subject Range Query Range Percent Splice Strand
X 18387944..18388048 1..105 100 -> Plus
X 18388124..18388366 106..348 100 -> Plus
X 18388574..18389669 349..1444 100 -> Plus
X 18389732..18390116 1445..1829 100 -> Plus
X 18390180..18390344 1830..1994 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:13:12 Download gff for LP08340.complete
Subject Subject Range Query Range Percent Splice Strand
X 18387944..18388048 1..105 100 -> Plus
X 18388124..18388366 106..348 100 -> Plus
X 18388574..18389669 349..1444 100 -> Plus
X 18389732..18390116 1445..1829 100 -> Plus
X 18390180..18390344 1830..1994 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:13:12 Download gff for LP08340.complete
Subject Subject Range Query Range Percent Splice Strand
X 18387944..18388048 1..105 100 -> Plus
X 18388124..18388366 106..348 100 -> Plus
X 18388574..18389669 349..1444 100 -> Plus
X 18389732..18390116 1445..1829 100 -> Plus
X 18390180..18390344 1830..1994 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:54:04 Download gff for LP08340.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18282157..18282399 106..348 100 -> Plus
arm_X 18281977..18282081 1..105 100 -> Plus
arm_X 18282607..18283702 349..1444 100 -> Plus
arm_X 18283765..18284149 1445..1829 100 -> Plus
arm_X 18284213..18284377 1830..1994 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:57:40 Download gff for LP08340.complete
Subject Subject Range Query Range Percent Splice Strand
X 18396222..18396464 106..348 100 -> Plus
X 18396672..18397767 349..1444 100 -> Plus
X 18397830..18398214 1445..1829 100 -> Plus
X 18398278..18398442 1830..1994 100   Plus
X 18396042..18396146 1..105 100 -> Plus

LP08340.hyp Sequence

Translation from 2 to 1930

> LP08340.hyp
QMMSPHKTHTWLPLAVAALLLILGPQSSLAEEPIYRLCVPQIYLAECQQL
LADPSEAGIRMECVAGRDRVDCLELIEQRKADVLATEPEDMYIAYHRKNE
DYRVISEIRTQQDKDAAFRYEGIILVKKDSPIRTLQQLRGAKSCHTGFGR
NVGYKIPITKLKNTHVLKVSADPQISATERELKSLSEFFTQSCLVGTYST
HPETDRLLKKKYANLCALCEKPEQCNYPDKFSGYDGAIRCLDKGQGEVAF
SKVQYIKKYFGLPGAGPDAPPAEGNPENFEYLCEDGTRRPVTGPACSWAQ
RPWSGYISNEQAVHNSEQLHQLQSRLERFFANGLQAQNKDAAAHLLIQPN
AVYHSKDAAIDPKVYLERAGYKDVIERDGSAIRKIRLCAQNDDEFAKCQA
LHQAAYARDARPELECVQSTDCVVALTKKEADLTIVRATGYADARSNQLQ
PIVYEQRAQDDVLVAVAAPGVTREALQKASIKFNENCERSRAAAALLNKR
RGLDACRVSSSDDGEVQIVPASELEKHKDAQLVCPSLERRPVTDFRDCNV
DVQLPRAIFIRSDTTSVEQETVKHLFSLISDKFGARGKLVDVFALFGEFQ
KGKKNVYFNDKAVQLTTELKNEIQNEQIYTDLQCNANKIAKQ*

LP08340.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
Tsf1-PC 641 CG6186-PC 1..641 2..642 3336 100 Plus
Tsf1-PA 641 CG6186-PA 1..641 2..642 3336 100 Plus
Tsf3-PA 714 CG3666-PA 54..444 56..455 450 28.1 Plus
Tsf2-PA 819 CG10620-PA 62..325 56..333 196 22 Plus
Tsf2-PA 819 CG10620-PA 481..695 63..291 195 25.7 Plus

LP08340.pep Sequence

Translation from 5 to 1930

> LP08340.pep
MMSPHKTHTWLPLAVAALLLILGPQSSLAEEPIYRLCVPQIYLAECQQLL
ADPSEAGIRMECVAGRDRVDCLELIEQRKADVLATEPEDMYIAYHRKNED
YRVISEIRTQQDKDAAFRYEGIILVKKDSPIRTLQQLRGAKSCHTGFGRN
VGYKIPITKLKNTHVLKVSADPQISATERELKSLSEFFTQSCLVGTYSTH
PETDRLLKKKYANLCALCEKPEQCNYPDKFSGYDGAIRCLDKGQGEVAFS
KVQYIKKYFGLPGAGPDAPPAEGNPENFEYLCEDGTRRPVTGPACSWAQR
PWSGYISNEQAVHNSEQLHQLQSRLERFFANGLQAQNKDAAAHLLIQPNA
VYHSKDAAIDPKVYLERAGYKDVIERDGSAIRKIRLCAQNDDEFAKCQAL
HQAAYARDARPELECVQSTDCVVALTKKEADLTIVRATGYADARSNQLQP
IVYEQRAQDDVLVAVAAPGVTREALQKASIKFNENCERSRAAAALLNKRR
GLDACRVSSSDDGEVQIVPASELEKHKDAQLVCPSLERRPVTDFRDCNVD
VQLPRAIFIRSDTTSVEQETVKHLFSLISDKFGARGKLVDVFALFGEFQK
GKKNVYFNDKAVQLTTELKNEIQNEQIYTDLQCNANKIAKQ*

LP08340.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22435-PA 635 GF22435-PA 25..634 29..640 2601 78.1 Plus
Dana\GF12273-PA 715 GF12273-PA 54..650 55..609 447 25.1 Plus
Dana\GF25118-PA 831 GF25118-PA 62..338 55..345 221 24.5 Plus
Dana\GF25118-PA 831 GF25118-PA 493..707 62..290 187 25.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19163-PA 641 GG19163-PA 1..641 1..641 3212 94.9 Plus
Dere\GG20582-PA 714 GG20582-PA 59..457 60..466 448 28.2 Plus
Dere\GG13814-PA 828 GG13814-PA 490..704 62..290 198 26.6 Plus
Dere\GG13814-PA 828 GG13814-PA 62..325 55..332 194 22.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12424-PA 637 GH12424-PA 5..636 7..640 2665 77.3 Plus
Dgri\GH20842-PA 721 GH20842-PA 54..664 55..621 449 25.3 Plus
Dgri\GH16841-PA 844 GH16841-PA 65..326 58..334 231 23.5 Plus
Dgri\GH16841-PA 844 GH16841-PA 504..803 62..395 208 24.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
Tsf1-PC 641 CG6186-PC 1..641 1..641 3336 100 Plus
Tsf1-PA 641 CG6186-PA 1..641 1..641 3336 100 Plus
Tsf3-PA 714 CG3666-PA 54..444 55..454 450 28.1 Plus
Tsf2-PA 819 CG10620-PA 62..325 55..332 196 22 Plus
Tsf2-PA 819 CG10620-PA 481..695 62..290 195 25.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15012-PA 638 GI15012-PA 5..638 7..641 2614 76.2 Plus
Dmoj\GI20947-PA 712 GI20947-PA 3..454 12..466 415 27.6 Plus
Dmoj\GI13060-PA 851 GI13060-PA 72..335 58..336 235 23.7 Plus
Dmoj\GI13060-PA 851 GI13060-PA 511..846 62..441 208 23.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26971-PA 636 GL26971-PA 1..636 2..641 2735 79.5 Plus
Dper\GL17670-PA 714 GL17670-PA 53..443 55..454 419 27.3 Plus
Dper\GL24940-PA 369 GL24940-PA 62..327 55..334 220 24.7 Plus
Dper\GL24941-PA 440 GL24941-PA 102..396 62..390 194 22.9 Plus
Dper\GL25990-PA 304 GL25990-PA 32..285 386..634 173 24.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22329-PA 640 GA22329-PA 1..640 2..641 2685 79.7 Plus
Dpse\GA17600-PA 714 GA17600-PA 53..443 55..454 423 27.7 Plus
Dpse\GA10442-PA 836 GA10442-PA 62..327 55..334 220 24.7 Plus
Dpse\GA10442-PA 836 GA10442-PA 498..792 62..390 195 22.9 Plus
Dpse\GA25221-PA 304 GA25221-PA 32..285 386..634 175 24.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22896-PA 641 GM22896-PA 1..641 1..641 3358 97.5 Plus
Dsec\GM21673-PA 714 GM21673-PA 54..457 55..466 470 28.8 Plus
Dsec\GM24642-PA 819 GM24642-PA 481..695 62..290 198 26.8 Plus
Dsec\GM24642-PA 819 GM24642-PA 62..325 55..332 197 24.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24854-PA 195 GD24854-PA 1..193 1..193 1019 99 Plus
Dsim\GD11174-PA 319 GD11174-PA 54..319 55..327 420 32 Plus
Dsim\GD12707-PA 819 GD12707-PA 481..695 62..290 196 26.2 Plus
Dsim\GD12707-PA 819 GD12707-PA 62..325 55..332 195 23 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15366-PA 638 GJ15366-PA 27..638 29..641 2606 78.3 Plus
Dvir\GJ20669-PA 713 GJ20669-PA 5..444 11..454 431 27.7 Plus
Dvir\GJ13808-PA 819 GJ13808-PA 62..330 55..338 227 23.3 Plus
Dvir\GJ13808-PA 819 GJ13808-PA 479..777 62..394 201 24.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25660-PA 633 GK25660-PA 4..633 8..641 2781 80.6 Plus
Dwil\GK20628-PA 714 GK20628-PA 55..444 60..458 434 28.2 Plus
Dwil\GK20971-PA 842 GK20971-PA 501..712 62..287 190 27.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Tsf1-PA 641 GE17726-PA 1..641 1..641 3226 95.5 Plus
Dyak\GE11768-PA 714 GE11768-PA 59..457 60..466 450 28.4 Plus
Dyak\GE20108-PA 819 GE20108-PA 62..327 55..334 202 22.8 Plus
Dyak\GE20108-PA 819 GE20108-PA 481..725 62..319 201 25.1 Plus