Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
LP08456.complete Sequence
1002 bp (1002 high quality bases) assembled on 2020-02-20
GenBank Submission: AY069746
> LP08456.complete
AAGATGCCACCTCCACCGCACCACGACCACCACCATCATCATGGGCCACC
ACACCATGGACCTCCCCACCATGGGCCACCGCACCATGGTCCTCCACACC
ACGGGCCACCGCATCACGGGCCACCACACCACGGACCGCCGCACCATGGA
CCTCCGCACCACGACCACCATCATCATGGACCACCACACCACGGTCCTCC
AATGCATCCTCGATGAGAACTATAATACAATATAAGCCGAATTTAACGTT
ATAAACTGATATGGAAAAACTTAATCGTTAACTGTGATTAAGCCACAAAC
TAACATTAAAATATCTTCACTAACTTCTAGTTAGTTTCACCAAGAGCAAA
ATGTTTTTATTTTAGAAATTGTTTAATTTTATAACACCATTATAAAGATA
CTGATTCTAATAAGCAATTAGAAGAATATTGAAGCAAGAATTGATTAAGT
ATGATTAAGTATCAAAAAGCCAGCAGATAAGGTAGACAATTATATATAAA
AGAAAGTCCCTCTCCACTAGAATGCAGATAAGATTACAGCCTACTGAAAC
TATGTTACTTTTGTATAAAAGGTCTGGCAGGAGTGAGCCAGTTTAGTGTA
CAACAGAAGCCCGCCAAGCAAAGATGCCTCCTCCACCACCGCACCACCAC
CACAACCCGCCGCCTCATGGGCCACCGCCCCACGGACCACCGCACCATGG
ACCTCCGCACCATGAACCACAGCCCCCGTTCCACACGCCAGTGCATCCGA
TTTACCACGAACCTCCTCACGGAAACAGCTCCGGCTACAATCCTCCGCCG
CCGCATGGTCCGTATCCATATGGTCCAGGATACGTGGCCCCAGGACCTCC
AATGCATCCGCGATAAGAACTGAACTGTAATCTAGATCGGTTAATATAGT
GTGATATCAACAAATGTACATTTGTGTGTGATTAAAAAATATGCTGCTTT
TAAATATATAAACTAACTTTAGTTAGTCACGCCTAAAAAAAAAAAAAAAA
AA
LP08456.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:13:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5011-RA | 984 | CG5011-RA | 1..984 | 1..984 | 4920 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2020-02-20 10:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 1200186..1201169 | 1..984 | 4830 | 99.4 | Plus |
chr2L | 23010047 | chr2L | 1200294..1200346 | 660..712 | 190 | 90.6 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:52:49 has no hits.
Blast to dmel-all-transcript-r6.23.fasta performed 2020-02-20 10:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5011-RB | 550 | CG5011-RB | 1..550 | 435..984 | 2750 | 100 | Plus |
CG5011-RA | 443 | CG5011-RA | 1..443 | 542..984 | 2215 | 100 | Plus |
CG43349-RB | 459 | CG43349-RB | 33..459 | 1..427 | 2135 | 100 | Plus |
CG43349-RB | 459 | CG43349-RB | 141..193 | 660..712 | 190 | 90.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2020-02-20 10:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1200237..1201221 | 1..985 | 4925 | 100 | Plus |
2L | 23513712 | 2L | 1200345..1200397 | 660..712 | 190 | 90.6 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:55:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1200237..1201221 | 1..985 | 4925 | 100 | Plus |
Blast to na_te.dros performed 2020-02-20 10:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 6719..6867 | 301..451 | 155 | 59.5 | Plus |
P-element | 2907 | P-element PPI251 2907bp AKA(V01520,X69493) Derived from X06779 (g58305) (Rel. 49, Last updated, Version 8). | 2583..2712 | 345..467 | 138 | 62.1 | Plus |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 2133..2282 | 320..466 | 122 | 56.6 | Plus |
412 | 7567 | 412 412 7567bp | 3966..4078 | 458..347 | 113 | 61.9 | Minus |
HB | 1653 | HB DMTHB1 1653bp Derived from X01748 (g8693) (Rel. 49, Last updated, Version 3). | 289..348 | 971..912 | 111 | 65 | Minus |
TAHRE | 10463 | TAHRE OSV 10463bp | 6017..6110 | 406..499 | 110 | 61.9 | Plus |
LP08456.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2020-02-20 10:20:32 Download gff for
LP08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 1200186..1201169 | 1..984 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:39:08 Download gff for
LP08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-RA | 1..243 | 624..866 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:44:38 Download gff for
LP08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-RA | 1..243 | 624..866 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:05:17 Download gff for
LP08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-RA | 1..243 | 624..866 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:36:05 Download gff for
LP08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-RA | 1..243 | 624..866 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:13:18 Download gff for
LP08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-RA | 1..243 | 624..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:55:20 Download gff for
LP08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-RA | 1..984 | 1..984 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:44:37 Download gff for
LP08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-RA | 1..984 | 1..984 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:17 Download gff for
LP08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-RB | 1..550 | 435..984 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:36:05 Download gff for
LP08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-RA | 1..984 | 1..984 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:13:18 Download gff for
LP08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-RB | 1..550 | 435..984 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.23.fasta performed 2020-02-20 10:20:32 Download gff for
LP08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-RB | 1..550 | 435..984 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2020-02-20 10:20:32 Download gff for
LP08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1200237..1201220 | 1..984 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2020-02-20 10:20:32 Download gff for
LP08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1200237..1201220 | 1..984 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:17 Download gff for
LP08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1200237..1201220 | 1..984 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:06:05 Download gff for
LP08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1200237..1201220 | 1..984 | 100 | | Plus |
LP08456.hyp Sequence
Translation from 2 to 253
> LP08456.hyp
DATSTAPRPPPSSWATTPWTSPPWATAPWSSTPRATASRATTPRTAAPWT
SAPRPPSSWTTTPRSSNASSMRTIIQYKPNLTL*
Sequence LP08456.hyp has no blast hits.
LP08456.pep2 Sequence
Translation from 3 to 215
> LP08456.pep2
MPPPPHHDHHHHHGPPHHGPPHHGPPHHGPPHHGPPHHGPPHHGPPHHGP
PHHDHHHHGPPHHGPPMHPR*
LP08456.pep2 Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2022-04-26 23:29:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43349-PB | 70 | CG43349-PB | 1..70 | 1..70 | 502 | 100 | Plus |
CG43349-PA | 70 | CG43349-PA | 1..70 | 1..70 | 502 | 100 | Plus |
CG5011-PB | 80 | CG5011-PB | 1..80 | 1..70 | 242 | 56.6 | Plus |
CG5011-PA | 80 | CG5011-PA | 1..80 | 1..70 | 242 | 56.6 | Plus |
CG13482-PA | 102 | CG13482-PA | 40..100 | 2..68 | 204 | 58.2 | Plus |
CG13482-PA | 102 | CG13482-PA | 24..84 | 6..64 | 202 | 58.5 | Plus |
CG13482-PA | 102 | CG13482-PA | 3..75 | 4..68 | 183 | 47.6 | Plus |
ssx-PE | 443 | CG3056-PE | 292..375 | 1..69 | 177 | 43.7 | Plus |
ssx-PB | 443 | CG3056-PB | 292..375 | 1..69 | 177 | 43.7 | Plus |
ssx-PD | 485 | CG3056-PD | 292..375 | 1..69 | 177 | 43.7 | Plus |
CG15126-PA | 53 | CG15126-PA | 3..43 | 15..60 | 172 | 70.2 | Plus |
CG15126-PA | 53 | CG15126-PA | 1..43 | 1..50 | 168 | 64.7 | Plus |
CG15126-PA | 53 | CG15126-PA | 3..39 | 20..63 | 156 | 63.6 | Plus |
CG5225-PA | 594 | CG5225-PA | 317..384 | 2..68 | 156 | 45.8 | Plus |
CG5225-PA | 594 | CG5225-PA | 341..409 | 2..68 | 152 | 41.7 | Plus |
CG15126-PA | 53 | CG15126-PA | 3..39 | 25..68 | 147 | 61.4 | Plus |
pygo-PA | 815 | CG11518-PA | 586..684 | 5..67 | 147 | 38.6 | Plus |
CG5225-PA | 594 | CG5225-PA | 129..229 | 1..69 | 146 | 37.9 | Plus |
Catsup-PA | 449 | CG10449-PA | 60..114 | 5..59 | 143 | 48.2 | Plus |
CG44838-PF | 783 | CG44838-PF | 646..726 | 3..69 | 143 | 42 | Plus |
CG44838-PH | 783 | CG44838-PH | 646..726 | 3..69 | 143 | 42 | Plus |
CG44838-PG | 783 | CG44838-PG | 646..726 | 3..69 | 143 | 42 | Plus |
CG44838-PD | 783 | CG44838-PD | 646..726 | 3..69 | 143 | 42 | Plus |
CG15784-PB | 554 | CG15784-PB | 177..238 | 7..69 | 140 | 47.7 | Plus |
CG15784-PA | 554 | CG15784-PA | 177..238 | 7..69 | 140 | 47.7 | Plus |
CG5225-PA | 594 | CG5225-PA | 301..368 | 9..68 | 138 | 45.7 | Plus |
CG15784-PB | 554 | CG15784-PB | 198..257 | 7..62 | 137 | 49.2 | Plus |
CG15784-PA | 554 | CG15784-PA | 198..257 | 7..62 | 137 | 49.2 | Plus |
lz-PB | 705 | CG1689-PB | 107..150 | 9..69 | 137 | 45.9 | Plus |
lz-PA | 826 | CG1689-PA | 107..150 | 9..69 | 137 | 45.9 | Plus |
ssx-PE | 443 | CG3056-PE | 282..338 | 14..63 | 135 | 49.1 | Plus |
ssx-PB | 443 | CG3056-PB | 282..338 | 14..63 | 135 | 49.1 | Plus |
ssx-PD | 485 | CG3056-PD | 282..338 | 14..63 | 135 | 49.1 | Plus |
Sf3a1-PA | 784 | CG16941-PA | 567..626 | 2..67 | 135 | 40.9 | Plus |
nito-PC | 793 | CG2910-PC | 190..278 | 1..69 | 135 | 38.9 | Plus |
nito-PA | 793 | CG2910-PA | 190..278 | 1..69 | 135 | 38.9 | Plus |
nito-PB | 793 | CG2910-PB | 190..278 | 1..69 | 135 | 38.9 | Plus |
CG5225-PA | 594 | CG5225-PA | 359..437 | 4..65 | 134 | 44.3 | Plus |
CG42260-PB | 974 | CG42260-PB | 226..277 | 9..66 | 133 | 48.3 | Plus |
CG42260-PD | 1247 | CG42260-PD | 501..552 | 9..66 | 133 | 48.3 | Plus |
CG42260-PA | 1249 | CG42260-PA | 501..552 | 9..66 | 133 | 48.3 | Plus |
brm-PB | 1638 | CG5942-PB | 29..94 | 3..69 | 133 | 43.5 | Plus |
brm-PA | 1638 | CG5942-PA | 29..94 | 3..69 | 133 | 43.5 | Plus |
brm-PE | 1658 | CG5942-PE | 29..94 | 3..69 | 133 | 43.5 | Plus |
CG14073-PC | 2133 | CG14073-PC | 1..83 | 1..65 | 133 | 38.1 | Plus |
CG14073-PB | 2133 | CG14073-PB | 1..83 | 1..65 | 133 | 38.1 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2022-04-26 23:29:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD23086-PA | 70 | GD23086-PA | 1..70 | 1..70 | 228 | 98.6 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2022-04-26 23:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE17462-PA | 69 | GE17462-PA | 3..69 | 2..70 | 207 | 97.1 | Plus |
LP08456.pep Sequence
Translation from 623 to 865
> LP08456.pep
MPPPPPHHHHNPPPHGPPPHGPPHHGPPHHEPQPPFHTPVHPIYHEPPHG
NSSGYNPPPPHGPYPYGPGYVAPGPPMHPR*
LP08456.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2022-04-26 23:27:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5011-PB | 80 | CG5011-PB | 1..80 | 1..80 | 531 | 100 | Plus |
CG5011-PA | 80 | CG5011-PA | 1..80 | 1..80 | 531 | 100 | Plus |
CG43349-PB | 70 | CG43349-PB | 1..70 | 1..80 | 242 | 56.6 | Plus |
CG43349-PA | 70 | CG43349-PA | 1..70 | 1..80 | 242 | 56.6 | Plus |
CG13482-PA | 102 | CG13482-PA | 31..96 | 2..62 | 151 | 44.9 | Plus |
CG5225-PA | 594 | CG5225-PA | 155..232 | 2..79 | 150 | 42.5 | Plus |
Bap111-PA | 749 | CG7055-PA | 565..657 | 1..76 | 141 | 34.4 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2022-04-26 23:27:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD23087-PA | 85 | GD23087-PA | 41..85 | 36..80 | 124 | 93.3 | Plus |