Clone LP08773 Report

Search the DGRC for LP08773

Clone and Library Details

Library:LP
Tissue Source:Drosophila melanogaster larval-early pupal
Created by:Ling Hong
Date Registered:1998-06-11
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:87
Well:73
Vector:pOT2
Associated Gene/TranscriptCpr49Ac-RC
Protein status:LP08773.pep: gold
Sequenced Size:1434

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8502 2002-11-15 Blastp of sequenced clone
CG8502 2003-01-01 Sim4 clustering to Release 3
Cpr49Ac 2008-04-29 Release 5.5 accounting
Cpr49Ac 2008-08-15 Release 5.9 accounting
Cpr49Ac 2008-12-18 5.12 accounting

Clone Sequence Records

LP08773.complete Sequence

1434 bp (1434 high quality bases) assembled on 2002-11-15

GenBank Submission: BT003229

> LP08773.complete
CGCCTTTCGAGCAGGATTACCATCTCAGTTATCTTAACGAAAAAGGATAC
TTTCCCCTAAAGGATACTCAAAGCCAACATGTTCACCAAGTCAATGCTGA
GCTTCTCCCTGGTCGTGGCCCTCTTCGTTGTCTGCCACGCCAGTCCCGTT
CCGGATAATAATGGCAAGTATACGGTTCCACAGCAATCCTCTAACGATGG
CAAGTATCGCCCCAGCGACGATGGGAAGTACCATGGGAATTCGCAGAACG
AAGGCCGGAGTGGTTCGCAAGAAAGTATAGGTCGCTATCATCACATGCCG
ATTCCCTACAGACATGTGAGCGATCAGCGTGAGCTTGGAAAATACCATCA
CATTCCCTATCCCTATGACGGAGGCTATGGACCCTACGCTGGTTCGAATA
TTCCCTATGTCCATGACGACAGGCCTTACAACCACGACCTGTACACAAGC
ACGACCACCAAGAAACCAACCACGACCACCAAAAGGACGACAACCTCGAC
CACCACCACCACCACCACGCCCCGCAATATTCTGTTCAACTACGATGATG
AGGGTCGCCACAAGATCCTGCACAAGGAAGAGGTCCGCAAACAGGACAAA
TACGATCACTCTTACCTGACTGAGAATGGAATCTATGGCGAGGAGCAGGC
CAAGCTTCACCACACCGGAGGCACACATGCCAAGGGATTCTATGAGTACA
CCGGTGACGATGGCAAGCTTTATCGCGTAAACTACGCCTCCAACGATGGC
GGCTTCATGCCCCAGGGAGACCACATTCACCCGATCCCCGATGCCATTGT
CCGTGCCCTCAAGTACGTGGAGGAGCAGCACAAGATCAACGGTGGGGCTC
AGTTCGACCATCGCGGCTTCCGCATCAATCACATGACCAAGGACCTTAAG
GCGCAGATCAAGGCGATCCATCTGGAGGAGATGCCCAAGGAGCTGACCGA
GCAGATCCATATGCTGGAGCACGAGGTGGAGCTCGCCGAGGAGGAGGAGC
GCGAGGAGCAGGCCGCATTGGAGCGACTCCGCCAGGCAGCAAAGTCCCAC
TAAGTGTCGAGCCTGAGCTGCCCTCATTCACAGCCATATGTTCCCGCTAC
CCAAGCCCCCAAAAACAGTCCTAGTCCCAACTCCAACATCCAACTCCATT
CCCCATGCATTTGCCGAGTGATCAACGGGCAAAACCTATAACAAGCCATC
GCAATACCGAAAAAAATCCACAAAAAAAGCAAAAGGAAGGTGAAGATGTC
AACATATCGAGTGGCAACCGGAGAATATTCGCACATAAGTCCGATCCCAT
GTTATTTCGTATTTATTTATCTGTCGAACTGTCGAATTTGACGATGTTGC
TATGCATAAGATAATTAATTTGTTATTATCGTATATCGAAATAAAACCTA
CTAAATATTTGTTATAAAAAAAAAAAAAAAAAAA

LP08773.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ac.h 2153 Cpr49Ac.h 664..2081 1..1418 7090 100 Plus
Cpr49Ac-RC 1770 Cpr49Ac-RC 177..1594 1..1418 7090 100 Plus
Cpr49Ac.d 1990 Cpr49Ac.d 823..1989 252..1418 5835 100 Plus
Cpr49Ac.d 1990 Cpr49Ac.d 177..430 1..254 1270 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8276480..8277283 612..1415 4005 99.9 Plus
chr2R 21145070 chr2R 8276149..8276312 448..611 820 100 Plus
chr2R 21145070 chr2R 8275533..8275685 279..431 765 100 Plus
chr2R 21145070 chr2R 8274616..8274753 117..254 690 100 Plus
chr2R 21145070 chr2R 8274214..8274331 1..118 590 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:53:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12389254..12390060 612..1418 4035 100 Plus
2R 25286936 2R 12388923..12389086 448..611 820 100 Plus
2R 25286936 2R 12388298..12388450 279..431 765 100 Plus
2R 25286936 2R 12387381..12387518 117..254 690 100 Plus
2R 25286936 2R 12386979..12387096 1..118 590 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12390453..12391259 612..1418 4035 100 Plus
2R 25260384 2R 12390122..12390285 448..611 820 100 Plus
2R 25260384 2R 12389497..12389649 279..431 765 100 Plus
2R 25260384 2R 12388580..12388717 117..254 690 100 Plus
2R 25260384 2R 12388178..12388295 1..118 590 100 Plus
2R 25260384 2R 12389110..12389140 252..282 155 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:24:30 has no hits.

LP08773.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:25:09 Download gff for LP08773.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8274214..8274330 1..117 100 -> Plus
chr2R 8274617..8274752 118..253 100 -> Plus
chr2R 8275148..8275174 254..280 100 -> Plus
chr2R 8275535..8275685 281..431 100 -> Plus
chr2R 8275744..8275759 432..447 100 -> Plus
chr2R 8276149..8276312 448..611 87 -> Plus
chr2R 8276480..8277283 612..1415 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:39:24 Download gff for LP08773.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RC 1..975 79..1053 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:03:49 Download gff for LP08773.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RC 1..975 79..1053 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:31:07 Download gff for LP08773.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RC 1..975 79..1053 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:54:03 Download gff for LP08773.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RC 1..975 79..1053 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:09 Download gff for LP08773.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RC 1..975 79..1053 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:22:34 Download gff for LP08773.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RC 1..1415 1..1415 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:03:49 Download gff for LP08773.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RC 13..1427 1..1415 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:31:07 Download gff for LP08773.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RC 20..1434 1..1415 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:54:03 Download gff for LP08773.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RC 1..1415 1..1415 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:09 Download gff for LP08773.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RC 20..1434 1..1415 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:25:09 Download gff for LP08773.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12387913..12387939 254..280 100 -> Plus
2R 12388300..12388450 281..431 100 -> Plus
2R 12388518..12388533 432..447 100 -> Plus
2R 12388923..12389086 448..611 100 -> Plus
2R 12386979..12387095 1..117 100 -> Plus
2R 12387382..12387517 118..253 100 -> Plus
2R 12389254..12390057 612..1415 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:25:09 Download gff for LP08773.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12387913..12387939 254..280 100 -> Plus
2R 12388300..12388450 281..431 100 -> Plus
2R 12388518..12388533 432..447 100 -> Plus
2R 12388923..12389086 448..611 100 -> Plus
2R 12386979..12387095 1..117 100 -> Plus
2R 12387382..12387517 118..253 100 -> Plus
2R 12389254..12390057 612..1415 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:25:09 Download gff for LP08773.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12387913..12387939 254..280 100 -> Plus
2R 12388300..12388450 281..431 100 -> Plus
2R 12388518..12388533 432..447 100 -> Plus
2R 12388923..12389086 448..611 100 -> Plus
2R 12386979..12387095 1..117 100 -> Plus
2R 12387382..12387517 118..253 100 -> Plus
2R 12389254..12390057 612..1415 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:31:07 Download gff for LP08773.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8274484..8274600 1..117 100 -> Plus
arm_2R 8274887..8275022 118..253 100 -> Plus
arm_2R 8275418..8275444 254..280 100 -> Plus
arm_2R 8275805..8275955 281..431 100 -> Plus
arm_2R 8276023..8276038 432..447 100 -> Plus
arm_2R 8276428..8276591 448..611 100 -> Plus
arm_2R 8276759..8277562 612..1415 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:26:18 Download gff for LP08773.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12390453..12391256 612..1415 100   Plus
2R 12388178..12388294 1..117 100 -> Plus
2R 12388581..12388716 118..253 100 -> Plus
2R 12389112..12389138 254..280 100 -> Plus
2R 12389499..12389649 281..431 100 -> Plus
2R 12389717..12389732 432..447 100 -> Plus
2R 12390122..12390285 448..611 100 -> Plus

LP08773.pep Sequence

Translation from 78 to 1052

> LP08773.pep
MFTKSMLSFSLVVALFVVCHASPVPDNNGKYTVPQQSSNDGKYRPSDDGK
YHGNSQNEGRSGSQESIGRYHHMPIPYRHVSDQRELGKYHHIPYPYDGGY
GPYAGSNIPYVHDDRPYNHDLYTSTTTKKPTTTTKRTTTSTTTTTTTPRN
ILFNYDDEGRHKILHKEEVRKQDKYDHSYLTENGIYGEEQAKLHHTGGTH
AKGFYEYTGDDGKLYRVNYASNDGGFMPQGDHIHPIPDAIVRALKYVEEQ
HKINGGAQFDHRGFRINHMTKDLKAQIKAIHLEEMPKELTEQIHMLEHEV
ELAEEEEREEQAALERLRQAAKSH*

LP08773.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12855-PA 324 GF12855-PA 1..298 1..295 1200 82.9 Plus
Dana\GF12853-PA 264 GF12853-PA 165..260 163..252 176 42.4 Plus
Dana\GF10925-PA 107 GF10925-PA 21..105 162..240 142 32.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20290-PA 324 GG20290-PA 1..323 1..323 1423 96 Plus
Dere\GG20287-PA 260 GG20287-PA 1..235 7..233 179 29 Plus
Dere\GG14999-PA 178 GG14999-PA 38..116 168..246 150 37.3 Plus
Dere\GG14082-PA 107 GG14082-PA 37..107 173..239 145 40.8 Plus
Dere\GG15459-PA 122 GG15459-PA 20..111 156..248 140 32.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20695-PA 325 GH20695-PA 1..298 1..295 954 70.9 Plus
Dgri\GH20693-PA 255 GH20693-PA 37..255 32..253 192 27.2 Plus
Dgri\GH20692-PA 142 GH20692-PA 29..105 162..233 151 44.2 Plus
Dgri\GH15846-PA 106 GH15846-PA 21..100 158..233 149 37.5 Plus
Dgri\GH15845-PA 106 GH15845-PA 21..100 158..233 149 37.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ac-PC 324 CG8502-PC 1..324 1..324 1762 100 Plus
Cpr49Ac-PG 315 CG8502-PG 1..315 1..324 1699 97.2 Plus
Cpr49Ac-PF 315 CG8502-PF 1..315 1..324 1699 97.2 Plus
Cpr49Ac-PA 294 CG8502-PA 1..294 1..324 1553 90.7 Plus
Cpr49Ac-PE 285 CG8502-PE 1..285 1..324 1501 88 Plus
Cpr49Ac-PD 123 CG8502-PD 1..93 1..123 483 75.6 Plus
Cpr49Ab-PA 259 CG30042-PA 5..256 11..252 257 30.5 Plus
Cpr65Eb-PA 179 CG8638-PA 38..136 168..268 160 32.4 Plus
Cpr49Aa-PB 144 CG30045-PB 34..125 163..247 155 39.1 Plus
Pcp-PA 184 CG3440-PA 27..113 157..247 146 31.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19056-PA 325 GI19056-PA 1..302 1..295 1025 71.9 Plus
Dmoj\GI19054-PA 279 GI19054-PA 186..279 163..253 202 45.7 Plus
Dmoj\GI12346-PA 108 GI12346-PA 15..97 165..248 148 35.6 Plus
Dmoj\GI19053-PA 141 GI19053-PA 29..105 162..233 148 42.9 Plus
Dmoj\GI12347-PA 159 GI12347-PA 38..116 168..246 144 36.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11632-PA 371 GL11632-PA 45..330 9..295 1032 72.2 Plus
Dper\GL15560-PA 102 GL15560-PA 24..99 162..233 140 40.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21228-PA 183 GA21228-PA 42..121 168..247 143 34.5 Plus
Dpse\GA20238-PA 102 GA20238-PA 24..99 162..233 139 40.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21376-PA 324 GM21376-PA 1..324 1..324 1398 95.7 Plus
Dsec\GM21374-PA 259 GM21374-PA 1..256 7..252 180 26.5 Plus
Dsec\GM13790-PA 179 GM13790-PA 38..116 168..246 148 37.3 Plus
Dsec\GM22355-PA 120 GM22355-PA 20..112 156..247 146 31.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10873-PA 253 GD10873-PA 1..253 1..324 695 55.3 Plus
Dsim\GD10871-PA 220 GD10871-PA 1..195 7..233 168 26.8 Plus
Dsim\GD13091-PA 179 GD13091-PA 38..116 168..246 149 37.3 Plus
Dsim\GD23446-PA 184 GD23446-PA 27..113 157..247 142 33 Plus
Dsim\GD14949-PA 120 GD14949-PA 20..112 156..247 141 31.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20025-PA 329 GJ20025-PA 1..301 1..295 1064 73.2 Plus
Dvir\GJ20023-PA 273 GJ20023-PA 5..273 12..253 223 28.3 Plus
Dvir\GJ20022-PA 173 GJ20022-PA 61..137 162..233 151 42.9 Plus
Dvir\GJ12238-PA 160 GJ12238-PA 38..119 168..249 145 36 Plus
Dvir\GJ12237-PA 123 GJ12237-PA 30..113 165..249 143 35.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22929-PA 331 GK22929-PA 1..297 1..295 1097 77.5 Plus
Dwil\GK22927-PA 251 GK22927-PA 8..244 16..248 242 31.1 Plus
Dwil\GK17540-PA 191 GK17540-PA 41..131 171..260 145 34.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12450-PA 300 GE12450-PA 1..300 1..324 1252 88.9 Plus
Dyak\GE12448-PA 258 GE12448-PA 5..233 7..233 172 30.1 Plus
Dyak\GE20445-PA 172 GE20445-PA 39..117 168..246 145 37.3 Plus
Dyak\GE21770-PA 122 GE21770-PA 20..111 156..248 143 33.3 Plus

LP08773.hyp Sequence

Translation from 78 to 1052

> LP08773.hyp
MFTKSMLSFSLVVALFVVCHASPVPDNNGKYTVPQQSSNDGKYRPSDDGK
YHGNSQNEGRSGSQESIGRYHHMPIPYRHVSDQRELGKYHHIPYPYDGGY
GPYAGSNIPYVHDDRPYNHDLYTSTTTKKPTTTTKRTTTSTTTTTTTPRN
ILFNYDDEGRHKILHKEEVRKQDKYDHSYLTENGIYGEEQAKLHHTGGTH
AKGFYEYTGDDGKLYRVNYASNDGGFMPQGDHIHPIPDAIVRALKYVEEQ
HKINGGAQFDHRGFRINHMTKDLKAQIKAIHLEEMPKELTEQIHMLEHEV
ELAEEEEREEQAALERLRQAAKSH*

LP08773.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ac-PC 324 CG8502-PC 1..324 1..324 1762 100 Plus
Cpr49Ac-PG 315 CG8502-PG 1..315 1..324 1699 97.2 Plus
Cpr49Ac-PF 315 CG8502-PF 1..315 1..324 1699 97.2 Plus
Cpr49Ac-PA 294 CG8502-PA 1..294 1..324 1553 90.7 Plus
Cpr49Ac-PE 285 CG8502-PE 1..285 1..324 1501 88 Plus